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■ Abbreviation / Long Form : CD / catalytic domain

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Total Number of Papers: 99
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Abbreviation:   CD  (>> Co-occurring Abbreviation)
Long Form:   catalytic domain
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No. Year Title Co-occurring Abbreviation
2020 Cloning and characterization of low-temperature adapted GH5-CBM3 endo-cellulase from Bacillus subtilis 1AJ3 and their application in the saccharification of switchgrass and coffee grounds. CBD
2020 Functional expression of recombinant hybrid enzymes composed of bacterial and insect's chitinase domains in E. coli. BtChi, BtLCL-MbChBD, ChBD, LR, LSP, MbLCL-BtChBD
2020 Interfacial molecular interactions of cellobiohydrolase Cel7A and its variants on cellulose. AC, CBM, E212Q
2020 Kringles of substrate plasminogen provide a 'catalytic switch' in plasminogen to plasmin turnover by Streptokinase. FRET, SK-HPN
2020 The expression, purification, and substrate analysis of matrix metalloproteinases in Drosophila melanogaster. MMPs, TIMPs
2019 Binding Process and Free Energy Characteristics of Cellulose Chain into the Catalytic Domain of Cellobiohydrolase TrCel7A. TrCel7A
2019 Cloning, expression, and characterization of novel GH5 endoglucanases from Thermobifida alba AHK119. CBM
2019 Kinetic analysis of multistep USP7 mechanism shows critical role for target protein in activity. DUB
2019 Modular Assembly of Unique Chimeric Lytic Enzymes on a Protein Scaffold Possessing Anti-Staphylococcal Activity. BD, Lst
10  2019 Predominant Nonproductive Substrate Binding by Fungal Cellobiohydrolase I and Implications for Activity Improvement. CBM
11  2019 Structure and dynamics of Trichoderma harzianum Cel7B suggest molecular architecture adaptations required for a wide spectrum of activities on plant cell wall polysaccharides. GH7
12  2019 The extracellular endo-beta-1,4-xylanase with multidomain from the extreme thermophile Caldicellulosiruptor lactoaceticus is specific for insoluble xylan degradation. BWX, CBMs, CCX, OSX, SCX, SLH
13  2018 A New Group of Modular Xylanases in Glycoside Hydrolase Family 8 from Marine Bacteria. CBM, GH8, NTD
14  2018 Biochemical and structural insights into a thermostable cellobiohydrolase from Myceliophthorathermophila. SAXS
15  2018 CRISPR-Based Targeted Epigenetic Editing Enables Gene Expression Modulation of the Silenced Beta-Galactoside Alpha-2,6-Sialyltransferase 1 in CHO Cells. CHO, dCas9, DNMT, TET1
16  2018 Crystal structure of a cold-active protease (Pro21717) from the psychrophilic bacterium, Pseudoalteromonas arctica PAMC 21717, at 1.4 A resolution: Structural adaptations to cold and functional analysis of a laundry detergent enzyme. ---
17  2018 Engineering enhanced cellobiohydrolase activity. GH7 CBHs
18  2018 Mechanistic implications of enhanced editing by a HyperTRIBE RNA-binding protein. ---
19  2018 Starch Synthesis in Ostreococcus tauri: The Starch-Binding Domains of Starch Synthase III-B Are Essential for Catalytic Activity. SBDs, SSIII
20  2018 The adsorption properties of endoglucanase to lignin and their impact on hydrolysis. CBM
21  2017 Cellotriose-hydrolyzing activity conferred by truncating the carbohydrate-binding modules of Cel5 from Hahella chejuensis. CBHs, EGs, GH5, SdCel5H-CD
22  2017 Crystal structure of a family 6 cellobiohydrolase from the basidiomycete Phanerochaete chrysosporium. ---
23  2017 Distinct roles of N- and O-glycans in cellulase activity and stability. CBM
24  2017 Epigenetic Editing of Ascl1 Gene in Neural Stem Cells by Optogenetics. Mash1, TALE
25  2017 Functional dissection of the N-terminal sequence of Clostridium sp. G0005 glucoamylase: identification of components critical for folding the catalytic domain and for constructing the active site structure. BD
26  2017 Improvement of Foxp3 stability through CNS2 demethylation by TET enzyme induction and activation. CNS2, iTregs, TET
27  2017 Matrix metalloproteinases outside vertebrates. MMP
28  2017 Stabilization of Foxp3 expression by CRISPR-dCas9-based epigenome editing in mouse primary T cells. CNS2, CRISPR, FOXP3, gRNAs, TET1, TGF-beta, tTregs
29  2016 Cloning, expression, purification, and characterization of the catalytic domain of sika deer MMP-13. ---
30  2016 CRISPR-dCas9 mediated TET1 targeting for selective DNA demethylation at BRCA1 promoter. 5-hmC, dCas9, sgRNA, TET
31  2016 Crystal structures of wild-type Trichoderma reesei Cel7A catalytic domain in open and closed states. MD
32  2016 Extra carbohydrate binding module contributes to the processivity and catalytic activity of a non-modular hydrolase family 5 endoglucanase from Fomitiporia mediterranea MF3/22. CMC, FP, RAC
33  2016 Insights from the Molecular Dynamics Simulation of Cellobiohydrolase Cel6A Molecular Structural Model from Aspergillus fumigatus NITDGPKA3. CBD, CBHs, Cel6A
34  2016 Inter-domain Synergism Is Required for Efficient Feeding of Cellulose Chain into Active Site of Cellobiohydrolase Cel7A. CBM, GHs
35  2016 Molecular characterization of a family 5 glycoside hydrolase suggests an induced-fit enzymatic mechanism. GHs
36  2016 Single-molecule Imaging Analysis of Binding, Processive Movement, and Dissociation of Cellobiohydrolase Trichoderma reesei Cel6A and Its Domains on Crystalline Cellulose. CBM, CBM-linker, TrCel6A
37  2015 Carbohydrate Recognition Specificity of Trans-sialidase Lectin Domain from Trypanosoma congolense. LD, STD, TconTS
38  2015 EFFECT OF DIPHTHERIA TOXIN T-DOMAIN ON ENDOSOMAL pH. DT, Td
39  2015 PARP inhibitors. AMD, BER, DBD
40  2015 Structural insight into autoinhibition and histone H3-induced activation of DNMT3A. ADD, DNMT3L
41  2015 Studies on properties of the xylan‑binding domain and linker sequence of xylanase XynG1‑1 from Paenibacillus campinasensis G1‑1. LS, XBD
42  2015 The hypomethylating agent Decitabine causes a paradoxical increase in 5-hydroxymethylcytosine in human leukemia cells. 5caC, 5fC, 5hmC, 5mC, TET
43  2014 Akt recruits Dab2 to albumin endocytosis in the proximal tubule. Dab2, PH, PRD
44  2014 Characterization of modular bifunctional processive endoglucanase Cel5 from Hahella chejuensis KCTC 2396. GH5
45  2014 Functional role of beta domain in the Thermoanaerobacter tengcongensis glucoamylase. BD
46  2014 Structural characterization of the regulatory domain of brain carnitine palmitoyltransferase 1. ---
47  2013 Cloning and expression of a family 10 xylanase gene (Aoxyn10) from Aspergillus oryzae in Pichia pastoris. GH, MW, ORF
48  2013 Fusing a carbohydrate-binding module into the Aspergillus usamii beta-mannanase to improve its thermostability and cellulose-binding capacity by in silico design. CBM, GH, reAuMan5A-CBM, TrCBH I
49  2013 Insertion of endocellulase catalytic domains into thermostable consensus ankyrin scaffolds: effects on stability and cellulolytic activity. ---
50  2013 Processivity and enzymatic mode of a glycoside hydrolase family 5 endoglucanase from Volvariella volvacea. ---
51  2013 The linker pivot in Ci-VSP: the key to unlock catalysis. VSD
52  2012 Adsorption characteristics of fungal family 1 cellulose-binding domain from Trichoderma reesei cellobiohydrolase I on crystalline cellulose: negative cooperative adsorption via a steric exclusion effect. CBD, CBHs
53  2012 Determination of the molecular states of the processive endocellulase Thermobifida fusca Cel9A during crystalline cellulose depolymerization. CBM
54  2012 Internally deleted human tRNA synthetase suggests evolutionary pressure for repurposing. AARSs, ABD, HisRS
55  2012 Three distinct actin-attached structural states of myosin in muscle fibers. EPR, LCD
56  2011 Development of an AlphaScreen-based high-throughput screening assay for inhibitors of human vascular endothelial growth factor receptor-3. HTS, VEGFs
57  2011 Entropy increases from different sources support the high-affinity binding of the N-terminal inhibitory domains of tissue inhibitors of metalloproteinases to the catalytic domains of matrix metalloproteinases-1 and -3. MMPs, TIMPs
58  2011 Protein allostery at the solid-liquid interface: endoglucanase attachment to cellulose affects glucan clenching in the binding cleft. MD
59  2011 The structure of the catalytic domain of Tannerella forsythia karilysin reveals it is a bacterial xenologue of animal matrix metalloproteinases. MMPs, MPs
60  2010 Cloning and characterization of a novel mannanase from Paenibacillus sp. BME-14. CBM
61  2010 Nucleotide-binding domain of phosphoglycerate kinase 1 reduces tumor growth by suppressing COX-2 expression. NBD, PGK-1
62  2009 A kinetic model for the enzymatic action of cellulase. CBM
63  2009 Characterization of a heparin-binding site on the catalytic domain of factor XIa: mechanism of heparin acceleration of factor XIa inhibition by the serpins antithrombin and C1-inhibitor. AT, C1-INH, FXIa
64  2009 Interaction between the CBM of Cel9A from Thermobifida fusca and cellulose fibers. CBM, MD
65  2009 Optimized bacterial expression and purification of the c-Src catalytic domain for solution NMR studies. SFKs
66  2008 An electrostatic network and long-range regulation of Src kinases. ---
67  2008 Changes in the activity of the multifunctional beta-glycosyl hydrolase (Cel44C-Man26A) from Paenibacillus polymyxa by removal of the C-terminal region to minimum size. CBM3, Fn3, GH26, GH44
68  2008 Characterization of the catalytic domains of Trichoderma reesei endoglucanase I, II, and III, expressed in Escherichia coli. ---
69  2008 Localization of aurora A and aurora B kinases during interphase: role of the N-terminal domain. Aur-B, AurA, ND
70  2008 Purification, characterization and modular organization of a cellulose-binding protein, CBP105, a processive beta-1,4-endoglucanase from Cellulomonas flavigena. CBM, CBP105, CMC
71  2007 Crystal structure of the MAP kinase binding domain and the catalytic domain of human MKP5. BD, MKPs
72  2007 Processivity, substrate binding, and mechanism of cellulose hydrolysis by Thermobifida fusca Cel9A. BC, CMC
73  2006 Cloning of multiple cellulase cDNAs from Volvariella volvacea and their differential expression during substrate colonization and fruiting. CBD
74  2006 Expression and characterization of recombinant gamma-tryptase. TMT
75  2006 Src kinase activation: A switched electrostatic network. A-loop
76  2006 [The construction of Thermotoga maritima endoglucanase Cel12B fused with CBD and the characterization of chimeric enzyme]. CBD
77  2005 Characteristics of adjacent family 6 acetylxylan esterases from Fibrobacter succinogenes and the interaction with the Xyn10E xylanase in hydrolysis of acetylated xylan. CBM
78  2005 Construction of minimum size cellulase (Cel5Z) from Pectobacterium chrysanthemi PY35 by removal of the C-terminal region. CBD, LR, SP
79  2005 Hypocrea jecorina (Trichoderma reesei) Cel7A as a molecular machine: A docking study. CBD
80  2004 Crystal structure of fervidolysin from Fervidobacterium pennivorans, a keratinolytic enzyme related to subtilisin. FN, PD, proMMP-2, SDs
81  2004 Crystal structure of the catalytic domain of MMP-16/MT3-MMP: characterization of MT-MMP specific features. MT-MMPs
82  2004 The 40 kDa carboxy-terminal domain of poly(ADP-ribose) polymerase-1 forms catalytically competent homo- and heterodimers in the absence of DNA. ---
83  2003 Cloning, expression and characterization of a family-74 xyloglucanase from Thermobifida fusca. CMC, tamXG, XEG, XG, XGOs
84  2003 Cloning, expression and characterization of a poly(3-hydroxybutyrate) depolymerase from Marinobacter sp. NK-1. GST, LD, SBD
85  2003 The N-terminal stem region of bovine and human beta1,4-galactosyltransferase I increases the in vitro folding efficiency of their catalytic domain from inclusion bodies. beta4Gal-T, SR, SRCD
86  2002 Influence of the transposition of the thermostabilizing domain of Clostridium thermocellum xylanase (XynX) on xylan binding and thermostabilization. CD-TSD, TSD, TSD-CD, XBD
87  2002 Xylanase and acetyl xylan esterase activities of XynA, a key subunit of the Clostridium cellulovorans cellulosome for xylan degradation. ---
88  2001 Conformational switch and role of phosphorylation in PAK activation. PAKs, RD
89  2001 Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics. ---
90  2000 Alteration of a single tryptophan residue of the cellulose-binding domain blocks secretion of the Erwinia chrysanthemi Cel5 cellulase (ex-EGZ) via the type II system. CBD, LR
91  2000 Expression, purification, and structural analysis of the trimeric form of the catalytic domain of the Escherichia coli dihydrolipoamide succinyltransferase. ---
92  1999 A family 26 mannanase produced by Clostridium thermocellum as a component of the cellulosome contains a domain which is conserved in mannanases from anaerobic fungi. CipA, manA
93  1999 Catalytic activities and substrate specificity of the human membrane type 4 matrix metalloproteinase catalytic domain. MMPs, MT, MT4-MMPCD
94  1998 Crystal structure of the truncated cubic core component of the Escherichia coli 2-oxoglutarate dehydrogenase multienzyme complex. CAT
95  1998 Membrane type 1 matrix metalloproteinase (MT1-MMP) cleaves the recombinant aggrecan substrate rAgg1mut at the 'aggrecanase' and the MMP sites. Characterization of MT1-MMP catabolic activities on the interglobular domain of aggrecan. MMPs, MT1-MMP, rAgg1
96  1998 Roles of the catalytic domain and two cellulose binding domains of Thermomonospora fusca E4 in cellulose hydrolysis. BMCC, CBD
97  1996 The structural basis for the elastolytic activity of the 92-kDa and 72-kDa gelatinases. Role of the fibronectin type II-like repeats. MME
98  1993 Activity studies of eight purified cellulases: Specificity, synergism, and binding domain effects. ---
99  1993 Expression of protein kinase C isozymes in rat glial cell line. ---