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■ Abbreviation / Long Form : DDIs / domain-domain interactions

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Total Number of Papers: 30
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Abbreviation:   DDIs  (>> Co-occurring Abbreviation)
Long Form:   domain-domain interactions
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No. Year Title Co-occurring Abbreviation
1  2021 DeepIII: Predicting isoform-isoform interactions by deep neural networks and data fusion. IIIs, PPIs
2  2021 PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions. PPIDM, PPIs
3  2021 Structural Profiling of Bacterial Effectors Reveals Enrichment of Host-Interacting Domains and Motifs. PPIs
4  2020 Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs. PPIs
5  2020 PlaPPISite: a comprehensive resource for plant protein-protein interaction sites. DMIs, PPIs
6  2019 Unraveling the structural landscape of intra-chain domain interfaces: Implication in the evolution of domain-domain interactions. IS-score, PPIs
7  2017 PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions. GO, PPIs
8  2016 Classification and Exploration of 3D Protein Domain Interactions Using Kbdock. DPIs
9  2016 Computational determination of the effects of virulent Escherichia coli and salmonella bacteriophages on human gut. ---
10  2016 PTIR: Predicted Tomato Interactome Resource. BiFC, GO, PPIs, PTIR
11  2016 Weighted mutual information analysis substantially improves domain-based functional network models. MI, PPI
12  2015 A structure-based classification and analysis of protein domain family binding sites and their interactions. DFBSs
13  2015 Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs. HPIs, MDR-TB
14  2014 Computational prediction of protein interactions related to the invasion of erythrocytes by malarial parasites. PPV, RBCs
15  2014 Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks. DLIs, PPI
16  2013 KBDOCK 2013: a spatial classification of 3D protein domain family interactions. ---
17  2013 Protein docking using case-based reasoning. ---
18  2013 Reconstituting protein interaction networks using parameter-dependent domain-domain interactions. PADDS, PPIs
19  2012 Inferring domain-domain interactions from protein-protein interactions in the complex network conformation. PPIs
20  2010 DOMINE: a comprehensive collection of known and predicted domain-domain interactions. ---
21  2010 Unraveling the conundrum of seemingly discordant protein-protein interaction datasets. PPIs
22  2009 A discriminative approach for identifying domain-domain interactions from protein-protein interactions. PPIs
23  2009 A top-down approach to infer and compare domain-domain interactions across eight model organisms. PPIs
24  2009 Evaluation of different domain-based methods in protein interaction prediction. PPIs
25  2009 GAIA: a gram-based interaction analysis tool--an approach for identifying interacting domains in yeast. GAIA, PPIs
26  2009 Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks. GO, K-GIDDI, PPIs
27  2008 An integrative domain-based approach to predicting protein-protein interactions. ILP, PPIs
28  2008 Are protein complexes made of cores, modules and attachments? ---
29  2007 Bayesian methods for predicting interacting protein pairs using domain information. PPIs
30  2006 Evolutionary conservation of domain-domain interactions. PPIs