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■ Abbreviation / Long Form : DEG / differentially expressed genes

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Total Number of Papers: 319
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Abbreviation:   DEG  (>> Co-occurring Abbreviation)
Long Form:   differentially expressed genes
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No. Year Title Co-occurring Abbreviation
2019 A balanced game: chicken macrophage response to ALV-J infection. ALV-J, MDM
2019 A computational approach to identify blood cell-expressed Parkinson's disease biomarkers that are coordinately expressed in brain tissue. eQTL, PD
2019 A High Protein Model Alters the Endometrial Transcriptome of Mares. BUN, BW
2019 Biomarker prediction for membranous nephropathy prognosis by microarray analysis. CTD, IgAN, MN, PPI
2019 Bovine endometrium responds differentially to age-matched short and long conceptuses†. IFNT
2019 CAMIRADA: Cancer microRNA association discovery algorithm, a case study on breast cancer. DG, TF
2019 Comparative RNA-seq analysis of the drought-sensitive lentil (Lens culinaris) root and leaf under short- and long-term water deficits. ---
2019 Comparative transcriptome analysis of mammary epithelial cells at different stages of lactation reveals wide differences in gene expression and pathways regulating milk synthesis between Jersey and Kashmiri cattle. MEC
2019 Comparative transcriptome analysis of translucent flesh disorder in mangosteen (Garcinia mangostana L.) fruits in response to different water regimes. PG, SuSy, TFD, XTH
10  2019 Comprehensive analysis of coexpressed long noncoding RNAs and genes in breast cancer. lncRNAs
11  2019 Construction of prognostic risk prediction model based on high-throughput sequencing expression profile data in childhood acute myeloid leukemia. AML
12  2019 Curcumin Inhibits Proliferation of Synovial Cells by Downregulating Expression of Matrix Metalloproteinase-3 in Osteoarthritis. FN1, MMP3
13  2019 De novo transcriptome characterization of two auxin-related genes associated with plant growth habit in Astragalus adsurgens Pall. SNPs
14  2019 Dickkopf-related protein 1 is a progestomedin acting on the bovine embryo during the morula-to-blastocyst transition to program trophoblast elongation. ---
15  2019 Difference in Pathomechanism Between Crohn's Disease and Ulcerative Colitis Revealed by Colon Transcriptome. CD, qRT-PCR, UC
16  2019 Differential gene expression and stereological analyses of the cerebellum following methamphetamine exposure. METH
17  2019 Differential gene expression during placentation in pregnancies conceived with different fertility treatments compared with spontaneous pregnancies. IVF
18  2019 Differential isoform expression and alternative splicing in sex determination in mice. AS, GSD
19  2019 Differentially expressed gene (DEG) based protein-protein interaction (PPI) network identifies a spectrum of gene interactome, transcriptome and correlated miRNA in nondisjunction Down syndrome. DEG's, PPI
20  2019 Digital gene expression profiling and validation study highlight Cyclin F as an important regulator for sperm motility of chickens. CCNF, DGE, KEGG, qRT-PCR
21  2019 Downregulated microRNA-330 suppresses left ventricular remodeling via the TGF-beta1/Smad3 signaling pathway by targeting SRY in mice with myocardial ischemia-reperfusion injury. IR, miR-330, MIRI, miRs, siRNA, Smad3, SRY
22  2019 Exposure of pregnant sows to low doses of estradiol-17beta impacts on the transcriptome of the endometrium and the female preimplantation embryos†. ---
23  2019 Gene expression profiling of the bone trabecula in patients with osteonecrosis of the femoral head by RNA sequencing. ANBT, LCN2, ONBT, ONFH
24  2019 Gene expression profiling of the canine placenta during normal and antigestagen-induced luteolysis. ---
25  2019 Gene signature associated with neuro-endocrine activity predicting prognosis of pancreatic carcinoma. ICGC
26  2019 Gene transcription profiling of Aspergillus oryzae 3.042 treated with ergosterol biosynthesis inhibitors. ---
27  2019 Human Breast Cancer Xenograft Model Implicates Peroxisome Proliferator-activated Receptor Signaling as Driver of Cancer-induced Muscle Fatigue. PDOX, SkM
28  2019 Hybrid Sequencing of Full-Length cDNA Transcripts of the Medicinal Plant Scutellaria baicalensis. AS, IR
29  2019 Hybrid-Transcriptome Sequencing and Associated Metabolite Analysis Reveal Putative Genes Involved in Flower Color Difference in Rose Mutants. ---
30  2019 Identification a novel set of 6 differential expressed genes in prostate cancer that can potentially predict biochemical recurrence after curative surgery. BCR, BCR, RP
31  2019 Identification and Characterization of MYB-bHLH-WD40 Regulatory Complex Members Controlling Anthocyanidin Biosynthesis in Blueberry Fruits Development. bHLH, BiFC, PPIs, qRT-PCR
32  2019 Identification and mapping of expressed genes associated with the 2DL QTL for fusarium head blight resistance in the wheat line Wuhan 1. FHB, FHB_SFI, NIL, QTL
33  2019 Identification of aberrant gene expression during breast ductal carcinoma in situ progression to invasive ductal carcinoma. DCIS, IDC
34  2019 Identification of hub genes and key pathways associated with angioimmunoblastic T-cell lymphoma using weighted gene co-expression network analysis. AITL, ALCL, GEO, GO, GS, GSEA, PPI, PTCL, WGCNA
35  2019 Identification of key genes, MicroRNAs and potentially regulated pathways in alcoholic hepatitis by integrative analysis. AH, CEGs, DEM
36  2019 Identification of molecular marker associated with ovarian cancer prognosis using bioinformatics analysis and experiments. DAVID, GEO, GO, KEGG, PPI, PSAT1, STRING
37  2019 Identification of Pyrvinium, an Anthelmintic Drug, as a Novel Anti-Adipogenic Compound Based on the Gene Expression Microarray and Connectivity Map. CMap
38  2019 Identification of the Differentially Expressed Genes Involved in the Synergistic Neurotoxicity of a HIV Protease Inhibitor and Methamphetamine. AIDS, HIV, METH, PI
39  2019 Immunomodulatory Effects and Induction of Apoptosis by Different Molecular Weight Chitosan Oligosaccharides in Head Kidney Macrophages From Blunt Snout Bream (Megalobrama amblycephala). COS, GSEA, MW, qRT-PCR, WGCNA
40  2019 Increase of Hspa1a and Hspa1b genes in the resting B cells of Sirt1 knockout mice. FC, KO
41  2019 Microarray and pathway analysis of two COMMA-Dbeta derived clones reveal important differences relevant to their developmental capacity in-vivo. ---
42  2019 Microcystin-LR-regulated transcriptome dynamics in ZFL cells. MAPK, MC-LR, ZFL
43  2019 Molecular Profiling of Cutaneous Lupus Lesions Identifies Subgroups Distinct from Clinical Phenotypes. CLE, DLE, IFN, SCLE, SLE
44  2019 Paclitaxel Induce Apoptosis of Giant Cells Tumor of Bone via TP53INP1 Signaling. PPI
45  2019 Pax7, Pax3 and Mamstr Genes are Involved in Skeletal Muscle Impaired Regeneration of dy2J/dy2J Mouse Model of Lama2-CMD. DMD, IPA, RNA-seq
46  2019 Plants Grown in Parafilm-Wrapped Petri Dishes Are Stressed and Possess Altered Gene Expression Profile. ---
47  2019 Polygenic selection drives the evolution of convergent transcriptomic landscapes across continents within a Nearctic sister species complex. ---
48  2019 Postmortem Cortical Transcriptomics of Lewy Body Dementia Reveal Mitochondrial Dysfunction and Lack of Neuroinflammation. AD, LBD
49  2019 Preweaning nutrient supply alters mammary gland transcriptome expression relating to morphology, lipid accumulation, DNA synthesis, and RNA expression in Holstein heifer calves. ELE, FC, IPA, MR, RES
50  2019 Prioritization of differentially expressed genes through integrating public expression data. ---
51  2019 Prognosis Prediction of Colorectal Cancer Using Gene Expression Profiles. AUCs, CRC, PI, PI-10
52  2019 RNA-Seq Reveals Flavonoid Biosynthesis-Related Genes in Pecan ( Carya illinoinensis) Kernels. ---
53  2019 RNA-seq Transcriptome Analysis in Ovarian Tissue of Pelibuey Breed to Explore the Regulation of Prolificacy. FDR, GO
54  2019 RNAseq Studies Reveal Distinct Transcriptional Response to Vitamin a (VA) Deficiency in Small Intestine (SI) versus Colon, Discovering Novel VA-regulated Genes (P15-002-19). GO, SI, VA, VAD, VAS, WGCNA
55  2019 Significantly increased amino acid accumulation in a novel albino branch of the tea plant (Camellia sinensis). Chl
56  2019 Simultaneous transcriptome analysis of oil palm clones and Phytophthora palmivora reveals oil palm defense strategies. GO
57  2019 The AabHLH35 Transcription Factor Identified from Anthurium andraeanum is Involved in Cold and Drought Tolerance. dg, WT
58  2019 The recognition of development-related genes in the testis and MAGs of time-series Harmonia axyridis adults using a time-series analysis by RNA-seq. MAG
59  2019 The Transcriptome of Verticillium dahliae Responds Differentially Depending on the Disease Susceptibility Level of the Olive (Olea europaea L.) Cultivar. ---
60  2019 Time-dependent effects of Pochonia chlamydosporia endophytism on gene expression profiles of colonized tomato roots. NGS
61  2019 Tissue-based transcriptomics of Chionodraco hamatus: Sequencing, de novo assembly, annotation and marker discovery. KOG, nt, PFAM, SSR
62  2019 Toxicological effects of ambient fine (PM2.5-0.18) and ultrafine (PM0.18) particles in healthy and diseased 3D organo-typic mucocilary-phenotype models. DHBE, NHBE, PM
63  2019 Transcriptome analysis identifies metallothionein as biomarkers to predict recurrence in hepatocellular cacinoma. HCC
64  2019 Transcriptome Analysis of Mesenchymal Stem Cells from Multiple Myeloma Patients Reveals Downregulation of Genes Involved in Cell Cycle Progression, Immune Response, and Bone Metabolism. MM, MSC
65  2019 Transcriptome Analysis Reveals Key Cold-Stress-Responsive Genes in Winter Rapeseed (Brassica rapa L.). GO
66  2019 Transcriptome and Gene Coexpression Network Analyses of Two Wild Populations Provides Insight into the High-Salinity Adaptation Mechanisms of Crassostrea ariakensis. WGCNA
67  2019 Transcriptome modulation by in ovo delivered Lactobacillus synbiotics in a range of chicken tissues. GOS, RFO
68  2019 Transcriptome Profile of the Variegated Ficus microcarpa c.v. Milky Stripe Fig Leaf. mTERF
69  2019 Transcriptome profiling reveals the roles of pigment mechanisms in postharvest broccoli yellowing. ERFs, TFs
70  2019 Transcriptome variation in response to gastrointestinal nematode infection in goats. FEC, GIN
71  2019 Transcriptomic Analysis of Cellular Pathways in Healing Flexor Tendons of Plasminogen Activator Inhibitor 1 (PAI-1/Serpine1) Null Mice. KO, RNA-Seq
72  2019 Transcriptomic analysis provides insight into the mechanism of salinity adjustment in swimming crab Portunus trituberculatus. ---
73  2019 Transcriptomics analysis of sirolimus treatment in lupus nephritis. GO, KEGG, LN
74  2019 Whole blood human transcriptome and virome analysis of ME/CFS patients experiencing post-exertional malaise following cardiopulmonary exercise testing. ME/CFS, PEM
75  2019 [Identification of Differentially Expressed Gene Core Genes in Early T-Cell Precursor Acute Lymphoblastic Leukemia and Its Regulatory Network Analysis]. ETP ALL
76  2018 "Tuberculosis in advanced HIV infection is associated with increased expression of IFNgamma and its downstream targets". HIV, ROC, TB
77  2018 A gene module associated with dysregulated TCR signaling pathways in CD4+ T cell subsets in rheumatoid arthritis. WGCNA
78  2018 A Simple Guideline to Assess the Characteristics of RNA-Seq Data. NGS, PCA, TIN
79  2018 A systemic approach to identify signaling pathways activated during short-term exposure to traffic-related urban air pollution from human blood. PA, PPI, TRAP
80  2018 A transcriptomics model of estrogen action in the ovine fetal hypothalamus: evidence for estrogenic effects of ICI 182,780. ---
81  2018 Acute hypoxia stress induced abundant differential expression genes and alternative splicing events in heart of tilapia. AS, DUES
82  2018 Bioinformatic analysis reveals novel hub genes and pathways associated with hypertensive nephropathy. GO, HTN
83  2018 Bioinformatic Integration of Molecular Networks and Major Pathways Involved in Mice Cochlear and Vestibular Supporting Cells. AGS, ENHCs, NECs
84  2018 Bioinformatics approach reveals the key role of C‑X‑C motif chemokine receptor 2 in endometriosis development. CXCR2, GSEA, HESCs, PPI
85  2018 Characterization of Spleen Transcriptome and Immunity Against Avian Colibacillosis After Immunization With Recombinant Attenuated Salmonella Vaccine Strains. APEC, ECP, RASV
86  2018 Chemoreception of Mouthparts: Sensilla Morphology and Discovery of Chemosensory Genes in Proboscis and Labial Palps of Adult Helicoverpa armigera (Lepidoptera: Noctuidae). CSPs, GRs, IRs, OBPs, ORs, qRT-PCR, SNMPs
87  2018 Comparative Analysis of Gene Expression Profiles of Human Dental Fluorosis and Kashin-Beck Disease. DF, KBD, qRT-PCR
88  2018 Comparative analysis of ovarian transcriptomes between prolific and non-prolific goat breeds via high-throughput sequencing. GO, JTG, KEGG, TBG
89  2018 Comparative liver transcriptome analysis in ducklings infected with duck hepatitis A virus 3 (DHAV-3) at 12 and 48hours post-infection through RNA-seq. DHAV-3
90  2018 Data on transcriptome profiling of circulating microRNAs in dairy cattle. DOP, miRNA
91  2018 Diet-Induced Obesity Affects Muscle Regeneration After Murine Blunt Muscle Trauma-A Broad Spectrum Analysis. DIO, ECM, MRI, TLR
92  2018 Differential Expression Analysis in RNA-seq Data Using a Geometric Approach. DGE, ROC
93  2018 Differential expression and methylation of integrin subunit alpha 11 and thrombospondin in the amnion of preterm birth. DMRs, ITGA11, THBS2
94  2018 Differential expression of olive flounder (Paralichthys olivaceus) transcriptome during viral hemorrhagic septicemia virus (VHSV) infection at warmer and colder temperature. VHSV
95  2018 Estrogen-Dependent Upregulation of Adcyap1r1 Expression in Nucleus Accumbens Is Associated With Genetic Predisposition of Sex-Specific QTL for Alcohol Consumption on Rat Chromosome 4. AUD, iP, ISCS, NP, PAC1, QTL
96  2018 Evaluation of pemetrexed and etoposide as therapeutic regimens for human papillomavirus-positive oral and oropharyngeal cancer. HPV, topo II, TS
97  2018 Evaluation of tools for highly variable gene discovery from single-cell RNA-seq data. HVG, scRNA-seq
98  2018 Expression of mitochondrial dysfunction-related genes and pathways in paclitaxel-induced peripheral neuropathy in breast cancer survivors. PIPN
99  2018 Extruded linseed alone or in combination with fish oil modifies mammary gene expression profiles in lactating goats. EL, FA
100  2018 Full-Length Transcriptome Sequencing and Modular Organization Analysis of the Naringin/Neoeriocitrin-Related Gene Expression Pattern in Drynaria roosii. bHLH, MS/MS, SGS, SMRT, WGCNA