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■ Abbreviation / Long Form : FFPE / formalin-fixed paraffin-embedded

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Abbreviation:   FFPE  (>> Co-occurring Abbreviation)
Long Form:   formalin-fixed paraffin-embedded
 Abbreviation Variation
 Long Form Variation
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No. Year Title Co-occurring Abbreviation
2019 A Case of Metastatic Biliary Tract Cancer Diagnosed Through Identification of an IDH1 Mutation. BTCs, ctDNA
2019 A combined gene expression tool for parallel histological prediction and gene fusion detection in non-small cell lung cancer. AC, LCNEC, NSCLC, SqCC, SSP
2019 A practical approach to enrich intact tryptic N-glycopeptides through size exclusion chromatography and hydrophilicity (SELIC) using an acrylamide-agarose composite gel system. SELIC
2019 A practical strategy for immunofluorescent detecting multiple targets in mouse tissues without restrictions on the host specious resources of the primary antibodies. IF
2019 A Single-Tube, EuroClonality-Inspired, TRG Clonality Multiplex PCR Aids Management of Patients with Enteropathic Diseases, including from Formaldehyde-Fixed, Paraffin-Embedded Tissues. ---
2019 All-Exon TP53 Sequencing and Protein Phenotype Analysis Accurately Predict Clinical Outcome after Surgical Treatment of Head and Neck Squamous Cell Carcinoma. HNSCC
2019 An Exceptional Case of Liver-Restricted High-Grade B-Cell Lymphoma in a Patient with Clinical History of HBV and HCV Coinfections. PHLs
2019 An Introduction to the Performance of Immunohistochemistry. eds, IHC
2019 Analysis of BRCAness with multiplex ligation-dependent probe amplification using formalin-fixed and paraffin-embedded pancreatic ductal adenocarcinoma tissue obtained via endoscopic ultrasound-guided fine-needle aspiration biopsy. EUS-FNAB, MLPA, PDAC
10  2019 Analysis of mRNA, miRNA, and DNA in Bone Cells by RT-qPCR and In Situ Hybridization. CISH, DIG, miRNAs, RT-qPCR
11  2019 Archive Mining Brings to Light a 25-Year Old Astrovirus Encephalitis Case in a Sheep. BoAstV-CH15, OvAstV-CH16
12  2019 Are formalin-fixed and paraffin-embedded tissues fit for proteomic analysis? ---
13  2019 Association between BRAF (V600E) mutation and clinicopathological features of papillary thyroid carcinoma: a Brazilian single-centre case series. HT, OR, PCR, PTC
14  2019 Association of BRCA1, ERCC1, RAP80, PKM2, RRM1, RRM2, TS, TSP1, and TXR1 mRNA expression levels between primary tumors and infiltrated regional lymph nodes in patients with resectable non-small cell lung cancer. LNs, NSCLC, OS, PCR, PTs, RFS
15  2019 Automated Multiplex Immunofluorescence Panel for Immuno-oncology Studies on Formalin-fixed Carcinoma Tissue Specimens. IF, IHC
16  2019 Autophagy related markers (Beclin-1 and ATG4B) are strongly expressed in Wilms' tumor and correlate with favorable histology. ---
17  2019 Biobanking: Objectives, Requirements, and Future Challenges-Experiences from the Munich Vascular Biobank. ACTB, AHA, GAPDH, qRT, RIN
18  2019 Cancer-associated stroma significantly contributes to the mesenchymal subtype signature of serous ovarian cancer. HGSOC, IHC, MES
19  2019 Cellular origin of microRNA-371a-3p in healthy males based on systematic urogenital tract tissue evaluation. miR-371a-3p, qRT-PCR
20  2019 Circulating tumour cells and their association with bone metastases in patients with neuroendocrine tumours. CTCs, CXCR4, NETs, pNET
21  2019 Clinical significance of multiple gene detection with a 22-gene panel in formalin-fixed paraffin-embedded specimens of 207 colorectal cancer patients. CRC, NGS
22  2019 Clinical, pathological and loss of heterozygosity differences in Wilms tumors between Asian and non-Asian children. LOH
23  2019 Cold Ischemia Score: An mRNA Assay for the Detection of Extended Cold Ischemia in Formalin-Fixed, Paraffin-Embedded Tissue. NCI
24  2019 Comprehensive Genomic Characterization of Parathyroid Cancer Identifies Novel Candidate Driver Mutations and Core Pathways. PC
25  2019 Cost-Efficient and Easy to Perform PCR-Based Assay to Identify Met Exon 14 Skipping in Formalin-Fixed Paraffin-Embedded (FFPE) Non-Small Cell Lung Cancer (NSCLC) Samples. NSCLC, RTK
26  2019 CYPOR is a novel and independent prognostic biomarker of recurrence-free survival in triple-negative breast cancer patients. RFS, TNBC
27  2019 Cytomegalovirus infection is not a major cause of corneal graft failure in the United Kingdom. CMV, HSV, VZV
28  2019 Cytopreparation of duodenal biopsy fixative improves detection rate of Giardia in clinically suspected cases. ---
29  2019 Detection of driver mutations in FFPE samples from patients with verified malignant melanoma. ---
30  2019 Developing a New qPCR-Based System for Screening Mutation. ARMS-PCR, MASS-PCR, NGS, qPCR
31  2019 Development of a Highly Multiplexed SRM Assay for Biomarker Discovery in Formalin-Fixed Paraffin-Embedded Tissues. SRM
32  2019 Differences in microRNA expression between melanoma and healthy adjacent skin. ---
33  2019 Different next-generation sequencing pipelines based detection of tumor DNA in cerebrospinal fluid of lung adenocarcinoma cancer patients with leptomeningeal metastases. cfDNA, CSF, EGFR, LAC, LM, NGS
34  2019 Does vacuum centrifugal concentration reduce yield or quality of nucleic acids extracted from FFPE biospecimens? ---
35  2019 Droplet digital PCR as an alternative to FISH for MYCN amplification detection in human neuroblastoma FFPE samples. FISH
36  2019 Effects of Improved DNA Integrity by Punch From Tissue Blocks as Compared to Pinpoint Extraction From Unstained Slides on Next-Generation Sequencing Quality Metrics. DIN, NGS
37  2019 EGFR and KRAS mutations in Chinese patients with sinonasal inverted papilloma and oncocytic papilloma. SIP
38  2019 Enhanced and controlled chromatin extraction from FFPE tissues and the application to ChIP-seq. ---
39  2019 Evaluation of next-generation sequencing-based clonality analysis of T-cell receptor gamma gene rearrangements based on a new interpretation algorithm. PCR, TRG, TRG-NGS
40  2019 Evaluation of the efficacy of various reagents in improving microRNA extraction. PEG, TDE
41  2019 Expression and clinicopathological role of miR146a in thyroid follicular carcinoma. extra-FTC, FA, FTC, NF-kB
42  2019 Expression and clinicopathological significance of DNA methyltransferase 1, 3A and 3B in tamoxifen-treated breast cancer patients. TAM-S, tamr
43  2019 Expression of CRBN, IKZF1, and IKZF3 does not predict lenalidomide sensitivity and mutations in the cereblon pathway are infrequent in multiple myeloma. CRBN, IMiDs, MM
44  2019 Extraction of RNA from formalin-fixed, paraffin-embedded equine placenta. ---
45  2019 Extraction-free whole transcriptome gene expression analysis of FFPE sections and histology-directed subareas of tissue. ---
46  2019 Factors affecting KRAS mutation detection in colorectal cancer tissue. ---
47  2019 FISH analysis of selected soft tissue tumors: Diagnostic experience in a tertiary center. BST, FISH, RPAH
48  2019 Gene expression profile of cytokines produced in biopsies from patients with American cutaneous leishmaniasis. ACL, CL, ML, RQ
49  2019 Genomic profile of breast sarcomas: a comparison with malignant phyllodes tumours. BS, CNV, GA, MPT
50  2019 Genotype characterization of livestock and human cystic echinococcosis in Mazandaran province, Iran. CE, cox1, ITS1, PCR-RFLP
51  2019 Glutamate transporter SLC1A1 is associated with clear cell renal cell carcinoma ccRCC
52  2019 Graphene oxide-quenching-based fluorescence in situ hybridization (G-FISH) to detect RNA in tissue: Simple and fast tissue RNA diagnostics. CLARITY, G-FISH, GO, PNA
53  2019 Handling and Assessment of Human Primary Prostate Organoid Culture. ---
54  2019 High-risk Human Papillomavirus Determination in Formalin-fixed, Paraffin-embedded Cervical Tissue Using the Roche Cobas 4800 System: A Comparative Study With Liquid-based Cytology. CIN1, HPV
55  2019 HPV as a marker for molecular characterization in head and neck oncology: Looking for a standardization of clinical use and of detection method(s) in clinical practice. HPV, OPSCC
56  2019 HPV-driven oropharyngeal squamous cell cancer in Croatia - Demography and survival. HNSCC, HPV, OPSCC
57  2019 Identification of Aspergillus and Mucorales in formalin-fixed, paraffin-embedded tissue samples: Comparison of specific and broad-range fungal qPCR assays. PCR
58  2019 Identification of Coiled-Coil Domain-Containing Protein 180 and Leucine-Rich Repeat-Containing Protein 4 as Potential Immunohistochemical Markers for Liposarcoma Based on Proteomic Analysis Using Formalin-Fixed, Paraffin-Embedded Tissue. ALT/WDL, CCDC180, LRRC4
59  2019 Identification of Proteomic Markers in Head and Neck Cancer Using MALDI-MS Imaging, LC-MS/MS, and Immunohistochemistry. HNC, IHC, MSI
60  2019 Impact of systemic and tumor lipid metabolism on everolimus efficacy in advanced pancreatic neuroendocrine tumors (pNETs). ACC1, FASN, PFS, PNETs
61  2019 In MALDI-Mass Spectrometry Imaging on Formalin-Fixed Paraffin-Embedded Tissue Specimen Section Thickness Significantly Influences m/z Peak Intensity. MALDI-MSI, TMA
62  2019 Incorporation of Cervista Human Papillomavirus 16/18 Assay Into Algorithms for Classifying Human Papillomavirus Status in Formalin-Fixed, Paraffin-Embedded Head and Neck Squamous Carcinoma Specimens. HPV, IHC, ISH, PCR, SCC
63  2019 Increases in Tumor N-Glycan Polylactosamines Associated with Advanced HER2-Positive and Triple-Negative Breast Cancer Tissues. HER2, MALDI-IMS, TMA, TNBC
64  2019 Landscape of Actionable Genetic Alterations Profiled from 1,071 Tumor Samples in Korean Cancer Patients. NGS
65  2019 Loss of ZNF516 protein expression is related with HR-HPV infection and cervical preneoplastic lesions. ---
66  2019 Making Formalin-Fixed, Paraffin Embedded Blocks. ---
67  2019 MALDI Imaging for Proteomic Painting of Heterogeneous Tissue Structures. IHC, MALDI, TMA
68  2019 Mass spectrometric imaging of cysteine rich proteins in human skin. BCC, IHC, MALDI-MSI, MTs, SCC
69  2019 Mass Spectrometry Amyloid Typing Is Reproducible across Multiple Organ Sites. IHC
70  2019 Measurement of tumor mutational burden (TMB) in routine molecular diagnostics: in silico and real-life analysis of three larger gene panels. Mbp, TMB, WES
71  2019 MicroRNA expression correlates with disease recurrence and overall survival in oral squamous cell carcinoma. HNSCC, miRNAs
72  2019 MicroRNA expression in pediatric intracranial ependymomas and their potential value for tumor grading. miRNAs
73  2019 microRNA-148a-3p regulates immunosuppression in DNA mismatch repair-deficient colorectal cancer by targeting PD-L1. CRC, IFN-gamma, miRNAs, MSI-H, PD-1, PD-L1
74  2019 Microtomy: Cutting Formalin-Fixed, Paraffin-Embedded Sections. ---
75  2019 MiR-31-5p acts as a tumor suppressor in renal cell carcinoma by targeting cyclin-dependent kinase 1 (CDK1). CDK1, HCC, RCC
76  2019 Molecular signatures of medullary thyroid carcinoma by matrix-assisted laser desorption/ionisation mass spectrometry imaging. CCH, CEA, FNAB, MALDI-MSI, MTC
77  2019 Multiclonality and Marked Branched Evolution of Low-Grade Endometrioid Endometrial Carcinoma. LGEC
78  2019 Multispectral Fluorescence Imaging Allows for Distinctive Topographic Assessment and Subclassification of Tumor-Infiltrating and Surrounding Immune Cells. IHC, MSI
79  2019 Mutation patterns in a population-based non-small cell lung cancer cohort and prognostic impact of concomitant mutations in KRAS and TP53 or STK11. NSCLC
80  2019 On-Tissue Hydrogel-Mediated Nondestructive Proteomic Characterization: Application to fr/fr and FFPE Tissues and Insights for Quantitative Proteomics Using a Case of Cardiac Myxoma. TMT
81  2019 p-mTOR, p-4EBP-1 and eIF4E expression in canine prostatic carcinoma. GS, PC
82  2019 Pathology and molecular epidemiology of Mycobacterium pinnipedii tuberculosis in native New Zealand marine mammals. ---
83  2019 Peritoneal washing is an adequate source for somatic BRCA1/2 mutation testing in ovarian malignancies. BRCA1, BRCA2
84  2019 Phylogenetic analysis of Histoplasma capsulatum var duboisii in baboons from archived formalin-fixed, paraffin embedded tissues. Hcd
85  2019 Potential Mutations in Uveal Melanoma Identified Using Targeted Next-Generation Sequencing. NGS, OS, UM
86  2019 Preliminary exploration of potential molecular therapeutic targets in recurrent and metastatic parathyroid carcinomas. NGS, PC
87  2019 Profiling of lymphoma from formalin-fixed paraffin-embedded tissue. ---
88  2019 Quantitative Analysis of HER2 Amplification by Droplet Digital PCR in the Follow-Up of Gastric Cancer Patients Being Treated with Trastuzumab after Surgery. ctDNA, ddPCR, EFTUD2, GC, HER2, PD, PFS
89  2019 Quantitative Immunoblotting of Cell Lines as a Standard to Validate Immunofluorescence for Quantifying Biomarker Proteins in Routine Tissue Samples. IF, IHC
90  2019 Rapid pathology of lumpectomy margins with open-top light-sheet (OTLS) microscopy. OTLS
91  2019 Real-time PCR-based method for the rapid detection of extended RAS mutations using bridged nucleic acids in colorectal cancer. EGFR, mCRC
92  2019 Recommendations for the clinical interpretation and reporting of copy number gains using gene panel NGS analysis in routine diagnostics. NGS, PATH
93  2019 Relationship between formalin reagent and success rate of targeted sequencing analysis using formalin fixed paraffin embedded tissues. ---
94  2019 Rift Valley Fever Viral RNA Detection by In Situ Hybridization in Formalin-Fixed, Paraffin-Embedded Tissues. ISH, RVFV
95  2019 RNA In Situ Hybridization for Epstein-Barr Virus and Cytomegalovirus: Comparison With In Situ Hybridization and Immunohistochemistry. CMV, EBV, IHC, PPIB, RISH
96  2019 Sensitive and rapid detection of TERT promoter and IDH mutations in diffuse gliomas. ddPCR, TERTp
97  2019 Serum and blister-fluid elevation and decreased epidermal content of high-mobility group box 1 protein in drug-induced Stevens-Johnson syndrome/toxic epidermal necrolysis. HMGB1, MPE, SJS, TEN
98  2019 Setting out the frame conditions for feasible use of FFPE derived RNA. ---
99  2019 Short Review: Genomic alterations in Hurthle cell carcinoma. HCA, HCC, HCT
100  2019 Short-Duration Rapid Chilling of Mastectomy Specimens Does Not Interfere With Breast Cancer Biomarker and Molecular Testing. ---