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■ Abbreviation / Long Form : FFPE / formalin-fixed paraffin-embedded

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Abbreviation:   FFPE  (>> Co-occurring Abbreviation)
Long Form:   formalin-fixed paraffin-embedded
 Abbreviation Variation
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No. Year Title Co-occurring Abbreviation
2020 A Nine-Gene Signature for Predicting the Response to Preoperative Chemoradiotherapy in Patients with Locally Advanced Rectal Cancer. FDA, LARC, PCRT
2020 A novel lymphoma-associated macrophage interaction signature (LAMIS) provides robust risk prognostication in diffuse large B-cell lymphoma clinical trial cohorts of the DSHNHL. DE, DLBCL, LAMIS
2020 A novel use of random priming-based single-strand library preparation for whole genome sequencing of formalin-fixed paraffin-embedded tissue samples. DDAT, dsDNA, ssDNA, WGS
2020 A preliminary study of microRNA expression in different types of primary melanoma. miRNAs
2020 A Rapid Method for Multispectral Fluorescence Imaging of Frozen Tissue Sections. ---
2020 A Small Hypoxia Signature Predicted pCR Response to Bevacizumab in the Neoadjuvant GeparQuinto Breast Cancer Trial. ---
2020 A streamlined mass spectrometry-based proteomics workflow for large-scale FFPE tissue analysis. DDA, DIA, MS
2020 Aberrant expression of ADAM9 in ovarian cancer and its clinical significance. ADAM9, DFS, OC, OS
2020 Accelerated instability testing reveals quantitative mass spectrometry overcomes specimen storage limitations associated with PD-L1 immunohistochemistry. IHC, MS, PD-L1
10  2020 Accelerated Lysis and Proteolytic Digestion of Biopsy-Level Fresh-Frozen and FFPE Tissue Samples Using Pressure Cycling Technology. FF, HCC, PCT
11  2020 ALK and ROS1 rearrangement tested by ARMS-PCR in non-small-cell lung cancer patients via cytology specimens: The experience of Shanghai Pulmonary Hospital. ALK, ARMS, NSCLC, PCR
12  2020 Amplicon-Based NGS Panels for Actionable Cancer Target Identification in Follicular Cell-Derived Thyroid Neoplasia. ---
13  2020 Amyloid-specific extraction using organic solvents. DMF, DMSO, LMD, MS, SAA, TFE
14  2020 An Isothermal, Multiplex Amplification Assay for Detection and Genotyping of Human Papillomaviruses in Formalin-Fixed, Paraffin-Embedded Tissues. HPV, HR
15  2020 An optimized BRCA1/2 next-generation sequencing for different clinical sample types. FF, NGS, OC, PPV, VAF
16  2020 Analysis of Epigenetic Alterations in Homologous Recombination DNA Repair Genes in Male Breast Cancer. BC, HRR, qMSP
17  2020 Analytical Performance of an Immunoprofiling Assay Based on RNA Models. ---
18  2020 Biological and Clinical Significance of GATA3 Detected from TCGA Database and FFPE Sample in Bladder Cancer Patients. GATA3
19  2020 Biomarker recommendation for PD-1/PD-L1 immunotherapy development in pediatric cancer based on digital image analysis of PD-L1 and immune cells. DIA, TIL
20  2020 Biomarkers of cetuximab resistance in patients with head and neck squamous cell carcinoma. EGFR, HNSCC, HRM, PFS, R/M
21  2020 Characterizations of Gene Alterations in Melanoma Patients from Chinese Population. ---
22  2020 Co-occurring genetic alterations and primary EGFR T790M mutations detected by NGS in pre-TKI-treated NSCLCs. MAF, NGS, NSCLC
23  2020 Cold Formalin Fixation Guarantees DNA Integrity in Formalin Fixed Paraffin Embedded Tissues: Premises for a Better Quality of Diagnostic and Experimental Pathology With a Specific Impact on Breast Cancer. ---
24  2020 Combination of KRAS and SMAD4 mutations in formalin-fixed paraffin-embedded tissues as a biomarker for pancreatic cancer. CI, HR, MST, NGS, OS, PDAC, RFS
25  2020 Comparison between Fluorescence in-situ Hybridization (FISH), Reverse Transcriptase PCR (RT-PCR) and fragment analysis, for detection of t (X; 18) (p11; q11) translocation in synovial sarcomas. FISH, IHC, RT-PCR, SS
26  2020 Comparison between two different next generation sequencing platforms for clinical relevant gene mutation test in solid tumours. ---
27  2020 Comparison of Fresh Frozen Tissue With Formalin-Fixed Paraffin-Embedded Tissue for Mutation Analysis Using a Multi-Gene Panel in Patients With Colorectal Cancer. CRC, NGS
28  2020 Comparison of Molecular Methods and BRAF Immunohistochemistry (VE1 Clone) for the Detection of BRAF V600E Mutation in Papillary Thyroid Carcinoma: A Meta-Analysis. IHC, PTC
29  2020 Comparison of Somatic Mutation Profiles Between Formalin-Fixed Paraffin Embedded Tissues and Plasma Cell-Free DNA from Ovarian Cancer Patients Before and After Surgery. ctDNA
30  2020 Complete response to trastuzumab and chemotherapy in recurrent urothelial bladder carcinoma with HER2 gene amplification: A case report. UBC
31  2020 Concordance in molecular genetic analysis of tumour tissue, plasma, and exhaled breath condensate samples from lung cancer patients. EBC
32  2020 Crosstalk between DNA methylation and gene expression in colorectal cancer, a potential plasma biomarker for tracing this tumor. CRC
33  2020 Cystic Neutrophilic Granulomatous Mastitis: A Clinicopathological Study With 16s rRNA Sequencing for the Detection of Corynebacteria in Formalin-Fixed Paraffin-Embedded Tissue. CNGM, MALDI-TOF MS
34  2020 Demonstration of microRNA using in situ hybridisation on formalin fixed paraffin wax samples using conventional oligonucleotide probes: a comparison with the use of locked nucleic acid probes. COP, ISH, LNA, miRNAs
35  2020 Detection of doxorubicin, cisplatin and therapeutic antibodies in formalin-fixed paraffin-embedded human cancer cells. ---
36  2020 Detection of mRNA of Telomerase Protein in Benign Naevi and Melanomas Using RNAscope. hTERT
37  2020 Development and Validation of a Novel and Rapid Molecular Detection Method for High-Risk Human Papillomavirus in Formalin-Fixed, Paraffin-Embedded Tumor Tissue. HNSCC, HPV
38  2020 Development of Malignancy-Risk Gene Signature Assay for Predicting Breast Cancer Risk. BC, MR
39  2020 Diagnostic value of fluorescein-labeled chitinase staining in formalin-fixed and paraffin-embedded tissues of fungal disease. GMS, PAS
40  2020 DNA Flow Cytometric Analysis of Paraffin-Embedded Tissue for the Diagnosis of Malignancy in Bile Duct Biopsies. HGD
41  2020 DNA isolation from achieved formalin-fixed paraffin-embedded tissues in a series of 212 thyroid carcinoma cases: the influence of preanalytical factors on DNA quantity and purity. ---
42  2020 Epidermal Growth Factor Receptor Expression of Colorectal Carcinoma in Nigerian Patients. EGFR
43  2020 Evaluation of the Anyplex II HPV28 Assay in the Detection of Human Papillomavirus in Archival Samples of Oropharyngeal Carcinomas. HPV, OPSCC
44  2020 Evaluation of the Use of Formalin-Fixed and Paraffin-Embedded Archive Gastric Tissues for Microbiota Characterization Using Next-Generation Sequencing. NGS, OTUs
45  2020 Extensive Changes in Transcriptomic "Fingerprints" and Immunological Cells in the Large Organs of Patients Dying of Acute Septic Shock and Multiple Organ Failure Caused by Neisseria meningitidis. FF
46  2020 Fluorescence in-situ hybridisation for TP63 rearrangements in T cell lymphomas: single-site experience of 470 patients and implications for clinical testing. BAP
47  2020 Genome analysis of peeling archival cytology samples detects driver mutations in lung cancer. VAF
48  2020 Germline and Somatic BRCA1/2 Mutations in 172 Chinese Women With Epithelial Ovarian Cancer. EOC, HBOC, OS, PFS, VUS
49  2020 High expression of LC3A, LC3B, and p62/SQSTM1 autophagic proteins in human colonic ganglion cells. CRC, IHC
50  2020 High-dimensional multiplexed immunohistochemical characterization of immune contexture in human cancers. HNSCC, mIHC, TIME
51  2020 High-Plex Spatially Resolved RNA and Protein Detection Using Digital Spatial Profiling: A Technology Designed for Immuno-oncology Biomarker Discovery and Translational Research. DMD, DSP, IO, PC-oligos
52  2020 High-Throughput Multiplex Immunohistochemical Imaging of the Tumor and Its Microenvironment. GC, mIHC, TME
53  2020 Highly Sensitive and Multiplexed In-Situ Protein Profiling with Cleavable Fluorescent Streptavidin. CFS
54  2020 HYPERsol: High-Quality Data from Archival FFPE Tissue for Clinical Proteomics. HYPERsol
55  2020 Identification of CTNNB1-PLAG1 gene rearrangement in a patient with pulmonary pleomorphic adenoma. PA, PLAG1
56  2020 Identifying Predictive Factors of Recurrence after Radical Resection in Gastric Cancer by RNA Immune-oncology Panel. DFS, GC, RIOP
57  2020 Immuno-oncology gene expression profiling of formalin-fixed and paraffin-embedded clear cell renal cell carcinoma: Performance comparison of the NanoString nCounter technology with targeted RNA sequencing. CCC, IFNG
58  2020 Immunohistochemical evidence of canine morbillivirus (canine distemper) infection in coatis (Nasua nasua) from Southern Brazil. CPV-2, IHC
59  2020 Immunoperoxidase and Immunofluorescence on Formalin-Fixed, Paraffin-Embedded Tissue Sections versus Immunofluorescence on Frozen Sections in the Assessment of Renal Biopsies. IF-F, IP-P
60  2020 Impact of different stabilization methods on RT-qPCR results using human lung tissue samples. RIN, RNL, SF, SF-OCT
61  2020 Independent prognostic value of ultra-sensitive quantification of tumor pre-treatment T790M subclones in EGFR mutated non-small cell lung cancer (NSCLC) treated by first/second generation TKI, depends on variant allele frequency (VAF): Results of the French cooperative thoracic intergroup (IFCT) biomarkers France project. CI, ddPCR, HR, NSCLC, OS, PFS, VAF
62  2020 Integrin alpha7 and Extracellular Matrix Laminin 211 Interaction Promotes Proliferation of Acute Myeloid Leukemia Cells and Is Associated with Granulocytic Sarcoma. AML, GS, ITGA7
63  2020 MALDI imaging in Fabry nephropathy: a multicenter study. FN, GLA
64  2020 Mass Spectrometry Imaging Reveals Neutrophil Defensins as Additional Biomarkers for Anti-PD-(L)1 Immunotherapy Response in NSCLC Patients. MALDI, MSI, NSCLC, PD-1
65  2020 Metabolic Profiling of Formalin-Fixed Paraffi n-Embedded Tissues Discriminates Normal Colon from Colorectal Cancer. ---
66  2020 MethCORR modelling of methylomes from formalin-fixed paraffin-embedded tissue enables characterization and prognostication of colorectal cancer. TNM
67  2020 Microsatellite instability status is determined by targeted sequencing with MSIcall in 25 cancer types. AUC, IHC, MSI, MSI-PCR, ROC
68  2020 Microwaving and Fluorophore-Tyramide for Multiplex Immunostaining on Mouse Adrenals - Using Unconjugated Primary Antibodies from the Same Host Species. ---
69  2020 MinION-Based DNA Barcoding of Preserved and Non-Invasively Collected Wildlife Samples. ---
70  2020 MIXnorm: Normalizing RNA-seq Data from Formalin-Fixed Paraffin-Embedded Samples. ---
71  2020 Molecular Analysis of Liquid-Based Cytological Specimen Using Virtually Positive Sputum with Adenocarcinoma Cells. EGFR, FRET, LBC, NGS, qPCR, TTF-1
72  2020 Molecular characterisation in tongue squamous cell carcinoma reveals key variants potentially linked to clinical outcomes. CHP, EBV, HPV, OTSCC
73  2020 Molecular Characterization of Echinococcus multilocularis and Echinococcus granulosus from Cysts and Formalin-Fixed Paraffin-Embedded Tissue Samples of Human Isolates in Northeastern Turkey. AE, CE, PCRs
74  2020 Monitoring of lung malignant epithelial cells by gene methylation analysis in the conditionally reprogrammed cell cultures. CRCs
75  2020 Multiplex Immunofluorescence Assays. ---
76  2020 Multiplex immunohistochemistry as a novel tool for the topographic assessment of the bone marrow stem cell niche. BM, IHC, MSI
77  2020 Multiplex immunohistochemistry assay to evaluate the melanoma tumor microenvironment. FoxP3, GRZB, HLA, TME
78  2020 Multiplexed ion beam imaging (MIBI) for characterization of the tumor microenvironment across tumor types. MIBI, TME
79  2020 NTRK testing: first results of the QuiP-EQA scheme and a comprehensive map of NTRK fusion variants and their diagnostic coverage by targeted RNA-based NGS assays. EQA, FISH, tNGS
80  2020 Ocular and Lacrimal Gland Lesions in Naturally Occurring Rabies of Domestic and Wild Mammals. PCR
81  2020 Outcomes of Radiotherapy for Mesenchymal and Non-Mesenchymal Subtypes of Gastric Cancer. ARTIST, CI, GC, HR, RT
82  2020 Overexpression and Mutation of p53 Exons 4-8 in Canine Intestinal Adenocarcinoma. CIN
83  2020 PCR Amplifiable DNA from Breast Disease FFPE Section for Mutational Analysis. PIM1, TNBC
84  2020 Polioencephalomyelitis in Domestic Swine Associated With Porcine Astrovirus Type 3. CNS, PoAstV3, RT-qPCR
85  2020 Preclinical activity of sacituzumab govitecan (IMMU-132) in uterine and ovarian carcinosarcomas. ADC, CS, SG
86  2020 Predictive Immune Modeling of Solid Tumors. IHC
87  2020 Prevalence of Epstein-Barr virus (EBV) in Iranian Breast Carcinoma Patients. BC, EBV, PCR
88  2020 Prognostic value of somatic focal amplifications on chromosome 30 in canine oral melanoma. CFA, HR, MI
89  2020 Proteomic Protocols for Differential Protein Expression Analyses. LFQ, SDC, TMT
90  2020 Quantification of HER1, HER2 and HER3 by time-resolved Forster resonance energy transfer in FFPE triple-negative breast cancer samples. HER, TNBC, TR-FRET
91  2020 Quantitative analysis of noncoding RNA from paired fresh and formalin-fixed paraffin-embedded brain tissues. circRNA, lncRNA, ncRNA
92  2020 Quantitative Profiling of the Human Substantia Nigra Proteome from Laser-capture Microdissected FFPE Tissue. GO, LCM, TMT
93  2020 Quantitative Proteomics for Monitoring Renal Transplant Injury. STA, TCMR
94  2020 Quantitative real-time PCR assay with immunohistochemical evaluation of HER2/neu oncogene in breast cancer patients and its correlation with clinicopathological findings. IHC, PCR
95  2020 Rapid EGFR mutation testing in lung cancer tissue samples using a fully automated system and single-use cartridge. EGFR, NGS, NSCLC, TKIs
96  2020 Rapid fully-automated assay for routine molecular diagnosis of BRAF mutations for personalized therapy of low grade gliomas. FA-PCR, LGG, SOP
97  2020 Rapid On-site Molecular Evaluation in thyroid cytopathology: A same-day cytological and molecular diagnosis. FNAs, ROME
98  2020 RCasFISH: CRISPR/dCas9-Mediated in Situ Imaging of mRNA Transcripts in Fixed Cells and Tissues. HER2, RCasFISH, smFISH, SNR
99  2020 Real-time PCR assay for detecting illicit steroid administration in veal calves allows reliable biomarker profiling of formalin-fixed, paraffin-embedded (FFPE) archival tissue samples. ---
100  2020 Retrospective study of porcine circovirus 3 (PCV3) in swine tissue from Brazil (1967-2018). PCV3