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■ Abbreviation / Long Form : FPKM / fragments per kilobase of transcript per million fragments mapped

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Total Number of Papers: 35
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Abbreviation:   FPKM  (>> Co-occurring Abbreviation)
Long Form:   fragments per kilobase of transcript per million fragments mapped
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No. Year Title Co-occurring Abbreviation
2020 Co-Expression Network Analysis of Spleen Transcriptome in Rock Bream (Oplegnathus fasciatus) Naturally Infected with Rock Bream Iridovirus (RBIV). MM, PRPF19, RBIV
2020 De novo assembly, transcriptome characterization, and simple sequence repeat marker development in duckweed Lemna gibba. SSRs
2020 Determination of reference genes for ovine pulmonary adenocarcinoma infected lung tissues using RNA-seq transcriptome profiling. OPA, RT-qPCR, SEM
2020 Different transcriptome profiles between human retinoblastoma Y79 cells and an etoposide-resistant subline reveal a chemoresistance mechanism. CCK-8, DEGs, KEGG, Rb, RNA-Seq
2020 Genome-wide identification and expression analyses of Sm genes reveal their involvement in early somatic embryogenesis in Dimocarpus longan Lour. AS, EC, KT, NEC, SE
2020 Identification and phylogenetics of Spodoptera frugiperda chemosensory proteins based on antennal transcriptome data. CSPs, DGE, IRs, OBPs, ORs, SNMPs
2020 Identification and preliminary characterization of chemosensory-related proteins in the gall fly, Procecidochares utilis by transcriptomic analysis. CSPs, DEGs, GRs, IRs, OBPs, ORs, qRT-PCR, SNMPs
2020 RNA sequencing of CD4 T-cells reveals the relationships between lncRNA-mRNA co-expression in elite controller vs. HIV-positive infected patients. DE, ECs, FDR, HCs, HPs, lncRNAs
2020 TEnGExA: an R package based tool for tissue enrichment and gene expression analysis. TEA
10  2020 The Differential Expression of Long Noncoding RNAs in Type 2 Diabetes Mellitus and Latent Autoimmune Diabetes in Adults. LADA, lncRNAs, mRNAs, T2DM
11  2020 Transcriptome analysis of fungicide-responsive gene expression profiles in two Penicillium italicum strains with different response to the sterol demethylation inhibitor (DMI) fungicide prochloraz. ABC, CaMK, DEGs, DMI, ERG, MAPK, MFS, qRT-PCR
12  2020 Transcriptomic response to cold of thermophilous medicinal plant Marsdenia tenacissima. DEGs
13  2019 A Six-Gene Signature Predicts Survival of Adenocarcinoma Type of Non-Small-Cell Lung Cancer Patients: A Comprehensive Study Based on Integrated Analysis and Weighted Gene Coexpression Network. AIC, AUC, DEGs, GEO, LUAD, NSCLC, WGCN
14  2019 Sex- and tissue-specific transcriptome analyses and expression profiling of olfactory-related genes in Ceracris nigricornis Walker (Orthoptera: Acrididae). CSPs, DEGs, IRs, OBPs, ORs, qRT-PCR, SNMPs
15  2019 Transcriptome Analysis to Identify Human Spermatogonial Cells from Sertoli Cell-Only Testes. NGS, OA, SCO
16  2018 Melonet-DB, a Grand RNA-Seq Gene Expression Atlas in Melon (Cucumis melo L.). NAC, NOR, RIN
17  2018 Transcriptome analysis in the beet webworm, Spoladea recurvalis (Lepidoptera: Crambidae). BLASTX, COG, KEGG
18  2018 Transcriptome sequencing and de novo assembly in arecanut, Areca catechu L elucidates the secondary metabolite pathway genes. GO
19  2018 Transcriptomics reveal the molecular underpinnings of chemosensory proteins in Chlorops oryzae. DEGs, GRs, IRs, OBPs, ORs, qRT-PCR, SNMPs
20  2017 Antennal transcriptome analysis of the piercing moth Oraesia emarginata (Lepidoptera: Noctuidae). ORs, PBPs, PRs, RT-qPCR
21  2017 Comparative venom gland transcriptomics of Naja kaouthia (monocled cobra) from Malaysia and Thailand: elucidating geographical venom variation and insights into sequence novelty. AChE, AP, HYA, LAAO, NGS, NK-M, PLB, SVSP
22  2017 Fast bootstrapping-based estimation of confidence intervals of expression levels and differential expression from RNA-Seq data. GUI, TPM
23  2017 High Quality Unigenes and Microsatellite Markers from Tissue Specific Transcriptome and Development of a Database in Clusterbean (Cyamopsis tetragonoloba, L. Taub). GO, HQ, NCBI, PIC, SSRs
24  2017 Identification and characterization of long intergenic noncoding RNAs in bovine mammary glands. ALDB, lincRNAs, QTL, UITs
25  2017 Two Cycloartenol Synthases for Phytosterol Biosynthesis in Polygala tenuifolia Willd. DEUG, MeJA, OSCs
26  2016 Analysis of ethanol fermentation mechanism of ethanol producing white-rot fungus Phlebia sp. MG-60 by RNA-seq. ---
27  2016 Comprehensive Analysis of the Triterpenoid Saponins Biosynthetic Pathway in Anemone flaccida by Transcriptome and Proteome Profiling. CYP450, MEP, MVA
28  2015 Expression profile analysis of long non-coding RNA associated with vincristine resistance in colon cancer cells by next-generation sequencing. lncRNAs, VCR
29  2015 Genome-wide analysis and differential expression of chitinases in banana against root lesion nematode (Pratylenchus coffeae) and eumusa leaf spot (Mycosphaerella eumusae) pathogens. CIs
30  2015 Identification and Comparative Expression Profiles of Chemoreception Genes Revealed from Major Chemoreception Organs of the Rice Leaf Folder, Cnaphalocrocis medinalis (Lepidoptera: Pyralidae). CSPs, IRs, OBPs, ORs, RT-qPCR, SNMPs
31  2015 Identification of core miRNA based on small RNA-seq and RNA-seq for colorectal cancer by bioinformatics. CRC, GEO, miRNA
32  2014 Identification of mutant genes with high-frequency, high-risk, and high-expression in lung adenocarcinoma. CCNC, CDS, COSMIC, DUSP, GO, MDH, RBM, SNV, STAT2, TF, TRIP
33  2014 Transcriptome sequencing of rhizome tissue of Sinopodophyllum hexandrum at two temperatures. ---
34  2013 Cryopreserved bovine spermatozoal transcript profile as revealed by high-throughput ribonucleic acid sequencing. ---
35  2013 De novo transcriptome analysis using 454 pyrosequencing of the Himalayan Mayapple, Podophyllum hexandrum. KAAS, KEGG