1 |
2020 |
First passage time in multistep stochastic processes with applications to dust charging. |
FPE, FPT, ME |

2 |
2019 |
Committors, first-passage times, fluxes, Markov states, milestones, and all that. |
--- |

3 |
2019 |
First passage of molecular motors on networks of cytoskeletal filaments. |
FPTs |

4 |
2019 |
First Passage Time Memory Lifetimes for Simple, Multistate Synapses: Beyond the Eigenvector Requirement. |
FPT |

5 |
2019 |
First-passage-time distribution in a moving parabolic potential with spatial roughness. |
FPTD, KAs, PAA, PDF |

6 |
2019 |
Globally optimal volume-trap arrangements for the narrow-capture problem inside a unit sphere. |
--- |

7 |
2019 |
Influence of the components of propagule pressure, Allee effects, and stochasticity on the time to establish introduced populations. |
--- |

8 |
2019 |
Polymer Translocation Across a Corrugated Channel: Fick⁻Jacobs Approximation Extended Beyond the Mean First-Passage Time. |
FPTD |

9 |
2019 |
The influences of correlated spatially random perturbations on first passage time in a linear-cubic potential. |
FPTDs, MPPT, SRPs |

10 |
2019 |
Transient probability currents provide upper and lower bounds on non-equilibrium steady-state currents in the Smoluchowski picture. |
--- |

11 |
2019 |
Transport and escape in a deformable channel driven by fractional Gaussian noise. |
FGN |

12 |
2018 |
Estimating the mean first passage time of protein misfolding. |
--- |

13 |
2018 |
Predicting the mean first passage time (MFPT) to reach any state for a passive dynamic walker with steady state variability. |
PDW, RW |

14 |
2018 |
RNA folding kinetics using Monte Carlo and Gillespie algorithms. |
--- |

15 |
2018 |
Water nucleation in helium, methane, and argon: A molecular dynamics study. |
LJ |

16 |
2017 |
An open-loop approach to calculate noise-induced transitions. |
--- |

17 |
2017 |
First Passage Time Memory Lifetimes for Simple, Multistate Synapses. |
FPT, SNR |

18 |
2017 |
First passage times for multiple particles with reversible target-binding kinetics. |
--- |

19 |
2016 |
Analysis of nucleation using mean first-passage time data from molecular dynamics simulation. |
--- |

20 |
2016 |
Effects of ensembles on methane hydrate nucleation kinetics. |
FSICA, MCG, OP |

21 |
2016 |
Entropically induced asymmetric passage times of charged tracers across corrugated channels. |
--- |

22 |
2016 |
Estimation of mean first passage time for bursty gene expression. |
--- |

23 |
2016 |
Is the optimal intervention policy UC superior to the suboptimal policy MFPT over inferred probabilistic Boolean network models? |
UC |

24 |
2016 |
Markovian and Non-Markovian Modeling of Membrane Dynamics with Milestoning. |
--- |

25 |
2016 |
Mean First-Passage Times in Biology. |
--- |

26 |
2016 |
Network exploration using true self-avoiding walks. |
BRWs, min, TSAWs |

27 |
2016 |
Quantifying the landscape and kinetic paths for epithelial-mesenchymal transition from a core circuit. |
EMT, MAPs |

28 |
2016 |
Two Relations to Estimate Membrane Permeability Using Milestoning. |
ISD |

29 |
2016 |
Universal Formula for the Mean First Passage Time in Planar Domains. |
--- |

30 |
2015 |
Asymptotic analysis of first passage time problems inspired by ecology. |
PDE, VMFPT |

31 |
2015 |
Asymptotic analysis of narrow escape problems in nonspherical three-dimensional domains. |
--- |

32 |
2015 |
Efficiency of message transmission using biased random walks in complex networks in the presence of traps. |
ER, RR, SF |

33 |
2015 |
Exploring the nature of the liquid-liquid transition in silicon: a non-activated transformation. |
HDL, LDL, LLPT |

34 |
2015 |
Facilitated diffusion framework for transcription factor search with conformational changes. |
TFs |

35 |
2015 |
First-Passage Times in d-Dimensional Heterogeneous Media. |
--- |

36 |
2015 |
Narrow escape problem with a mixed trap and the effect of orientation. |
--- |

37 |
2015 |
Nucleation rate analysis of methane hydrate from molecular dynamics simulations. |
MD, SP |

38 |
2015 |
Optimization and universality of Brownian search in a basic model of quenched heterogeneous media. |
--- |

39 |
2015 |
Phase transitions in optimal search times: How random walkers should combine resetting and flight scales. |
--- |

40 |
2015 |
Translocation of a semiflexible polymer through a nanopore in the presence of attractive binding particles. |
BPs |

41 |
2014 |
Anisotropic diffusion in a two-dimensional model with obstruction and a comparison of mean first passage time calculations. |
--- |

42 |
2014 |
Cavitation in a metallic liquid: homogeneous nucleation and growth of nanovoids. |
CNT, JMA, MD, SP |

43 |
2014 |
Effects of reciprocity on random walks in weighted networks. |
--- |

44 |
2014 |
Estimating mean first passage time of biased random walks with short relaxation time on complex networks. |
--- |

45 |
2014 |
First Order Transition for the Optimal Search Time of Levy Flights with Resetting. |
--- |

46 |
2014 |
First-passage times, mobile traps, and Hopf bifurcations. |
--- |

47 |
2014 |
Mean first-passage time for maximal-entropy random walks in complex networks. |
MERW, TURW |

48 |
2014 |
Stochastic simulation of single-molecule pulling experiments. |
--- |

49 |
2014 |
The role of dendritic spine morphology in the compartmentalization and delivery of surface receptors. |
PSD |

50 |
2013 |
Anomalous biased diffusion in networks. |
RR, SF, th, th |

51 |
2013 |
Computation of transit times using the milestoning method with applications to polymer translocation. |
--- |

52 |
2013 |
Controlling the efficiency of trapping in treelike fractals. |
--- |

53 |
2013 |
Fundamental mechanisms for tablet dissolution: simulation of particle deaggregation via Brownian dynamics. |
BD, FPTD |

54 |
2013 |
Homogeneous bubble nucleation in water at negative pressure: a Voronoi polyhedra analysis. |
--- |

55 |
2013 |
Narrow-escape problem for the unit sphere: homogenization limit, optimal arrangements of large numbers of traps, and the N(2) conjecture. |
--- |

56 |
2013 |
Random walks in weighted networks with a perfect trap: an application of Laplacian spectra. |
ATT |

57 |
2013 |
Random walks on weighted networks. |
ATT |

58 |
2013 |
The timing statistics of spontaneous calcium release in cardiac myocytes. |
Ca, SCR, SR |

59 |
2012 |
Estimating network topology by the mean first-passage time. |
--- |

60 |
2012 |
Filling of a Poisson trap by a population of random intermittent searchers. |
--- |

61 |
2012 |
First passages in bounded domains: when is the mean first passage time meaningful? |
--- |

62 |
2012 |
Mathematical modeling and numerical computation of narrow escape problems. |
--- |

63 |
2012 |
Random walks in modular scale-free networks with multiple traps. |
--- |

64 |
2012 |
Spatial log-periodic oscillations of first-passage observables in fractals. |
--- |

65 |
2012 |
Unassisted transport of N-acetyl-L-tryptophanamide through membrane: experiment and simulation of kinetics. |
DOPC, PAMPA |

66 |
2011 |
Adiabatic and non-adiabatic non-equilibrium stochastic dynamics of single regulating genes. |
--- |

67 |
2011 |
Brownian diffusion of ion channels in different membrane patch geometries. |
--- |

68 |
2011 |
Close or connected: distance and connectivity effects on transport in networks. |
--- |

69 |
2011 |
Comment on "Two definitions of the hopping time in a confined fluid of finite particles" [J. Chem. Phys. 129, 154117 (2008)]. |
--- |

70 |
2011 |
Electrostatic approximation of source-to-target mean first-passage times on networks. |
--- |

71 |
2011 |
Quasi-steady-state analysis of two-dimensional random intermittent search processes. |
--- |

72 |
2010 |
A CoD-based reduction algorithm for designing stationary control policies on Boolean networks. |
BNs, CoD, PBN, SSD |

73 |
2010 |
Determining mean first-passage time on a class of treelike regular fractals. |
EMFPT, PMFPT |

74 |
2010 |
Effective target arrangement in a deterministic scale-free graph. |
--- |

75 |
2010 |
Explicit determination of mean first-passage time for random walks on deterministic uniform recursive trees. |
ATT, DURTs |

76 |
2010 |
Extended narrow escape problem: boundary homogenization-based analysis. |
--- |

77 |
2010 |
Impact of degree heterogeneity on the behavior of trapping in Koch networks. |
--- |

78 |
2010 |
Mean first-passage time for random walks on generalized deterministic recursive trees. |
--- |

79 |
2010 |
Milestoning without a Reaction Coordinate. |
MD |

80 |
2010 |
Quasi-steady state reduction of molecular motor-based models of directed intermittent search. |
FP |

81 |
2009 |
Combinatorial fiber-tracking of the human brain. |
DTI, ODF |

82 |
2009 |
Distinct scalings for mean first-passage time of random walks on scale-free networks with the same degree sequence. |
--- |

83 |
2009 |
Exact solution for mean first-passage time on a pseudofractal scale-free web. |
PSFW |

84 |
2009 |
Intervention in gene regulatory networks via greedy control policies based on long-run behavior. |
--- |

85 |
2009 |
Standard random walks and trapping on the Koch network with scale-free behavior and small-world effect. |
--- |

86 |
2009 |
Trapping in scale-free networks with hierarchical organization of modularity. |
--- |

87 |
2008 |
Mean first-passage time for superdiffusion in a slit pore with sticky boundaries. |
--- |

88 |
2008 |
Random walks on complex trees. |
--- |

89 |
2007 |
Escape driven by alpha-stable white noises. |
--- |

90 |
2007 |
Homogeneous nucleation and growth of melt in copper. |
EAM |

91 |
2007 |
Shot noise perturbations and mean first passage times between stable states. |
--- |

92 |
2006 |
Escape through an unstable limit cycle: resonant activation. |
--- |

93 |
2006 |
Formation and positioning of nucleosomes: effect of sequence-dependent long-range correlated structural disorder. |
LRC, WT |

94 |
2005 |
Hierarchical Numerical Solution of Smoluchowski Equations with Rough Potentials. |
--- |

95 |
2004 |
Diffusion in correlated random potentials, with applications to DNA. |
--- |

96 |
2004 |
Fluctuations-induced switch in the gene transcriptional regulatory system. |
SPD |

97 |
2004 |
Random walks on complex networks. |
--- |

98 |
2003 |
Coherent and incoherent trapping of a diffusion-assisted system in the presence of an external periodic field. |
--- |

99 |
2003 |
Superconducting junctions perturbed by environmental fluctuation. |
--- |

100 |
2002 |
Disorder and funneling effects on exciton migration in treelike dendrimers. |
--- |