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■ Abbreviation / Long Form : ORFs / open reading frames

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Total Number of Papers: 4984
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Abbreviation:   ORFs  (>> Co-occurring Abbreviation)
Long Form:   open reading frames
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No. Year Title Co-occurring Abbreviation
2020 A vector-enzymatic DNA fragment amplification-expression technology for construction of artificial, concatemeric DNA, RNA and proteins for novel biomaterials, biomedical and industrial applications. aa, E. coli, REase
2020 Characterization and genome sequencing of a novel T7-like lytic phage, kpssk3, infecting carbapenem-resistant Klebsiella pneumoniae. CRKP, EPS, PFU
2020 Characterization of the Complete Genome and P0 Protein for a Previously Unreported Genotype of Cotton Leafroll Dwarf Virus, an Introduced Polerovirus in the United States. CLRDV, CLRDV-AL, RT
2020 Comparative genomics analysis of Mycoplasma capricolum subsp. capripneumoniae 87001. CCPP, Mccp
2020 Complete genome sequence of aglaonema bacilliform virus (ABV). ABV, RT, TaBCHV
2020 Complete genome sequence of rose virus A, the first carlavirus identified in rose. RVA, TGB
2020 Complete nucleotide sequence of loquat virus A, a member of the family Betaflexiviridae with a novel genome organization. CP, CuVA, CVA, LoVA, MuVA, nt, RP
2020 Comprehensive annotations of human herpesvirus 6A and 6B genomes reveal novel and conserved genomic features. HHV-6, iORFs, uORFs
2020 Fine mapping of the male fertility restoration gene CaRf032 in Capsicum annuum L. ---
10  2020 Functional screening of a soil metagenome for DNA endonucleases by acquired resistance to bacteriophage infection. ---
11  2020 Genome sequence analysis of 91 Salmonella Enteritidis isolates from mice caught on poultry farms in the mid 1990s. ---
12  2020 GGERV20, a recently integrated, segregating endogenous retrovirus in Gallus gallus. ERVs, LTRs
13  2020 Identification and characterization of chicken circovirus from commercial broiler chickens in China. CCV
14  2020 Isolation and characterization of two novel plasmids pCYM01 and pCYM02 of Cylindrospermum stagnale. ---
15  2020 Isolation and Genome Sequencing of a Novel Pseudomonas aeruginosa Phage PA-YS35. ---
16  2020 Molecular Characterization of the Major Open Reading Frames (ORFs) and Enhancer Elements From Four Geographically Distinct North American Equine Infectious Anemia Virus (EIAV) Isolates. EIAV, EIAVPA, LTRs
17  2020 Optimization of the Codon Pair Usage of Human Respiratory Syncytial Virus Paradoxically Resulted in Reduced Viral Replication In Vivo and Reduced Immunogenicity. CPO, CPO, RSV
18  2020 PreS1 Mutations Alter the Large HBsAg Antigenicity of a Hepatitis B Virus Strain Isolated in Bangladesh. HBsAg, HBV
19  2019 A Genome-Wide Epstein-Barr Virus Polyadenylation Map and Its Antisense RNA to EBNA. EBV, pA sites, PA-seq, Pol II, RACE
20  2019 A molecular clone of Chronic Bee Paralysis Virus (CBPV) causes mortality in honey bee pupae (Apis mellifera). CBPV
21  2019 A mycobacteriophage genomics approach to identify novel mycobacteriophage proteins with mycobactericidal properties. ---
22  2019 A new polycipivirus identified in Colobopsis shohki. CshV1
23  2019 A Novel Alphabaculovirus from the Soybean Looper, Chrysodeixis includens, that Produces Tetrahedral Occlusion Bodies and Encodes Two Copies of he65. hr
24  2019 A Novel Arsenate-Resistant Determinant Associated with ICEpMERPH, a Member of the SXT/R391 Group of Mobile Genetic Elements. E. coli, ICE, MFS, NAD
25  2019 A novel astrovirus identified in wild rhesus monkey feces in China. AstV, MkAstV
26  2019 A Novel Densovirus Isolated From the Asian Tiger Mosquito Displays Varied Pathogenicity Depending on Its Host Species. AalDV-7, IMM, MBVDs, MDVs
27  2019 A novel double-stranded RNA mycovirus isolated from Trichoderma harzianum. dsRNA, ThMV1
28  2019 A novel jumbo Tenacibaculum maritimum lytic phage with head-fiber-like appendages. ---
29  2019 A novel phage from periodontal pockets associated with chronic periodontitis. ---
30  2019 A Novel RNA Virus Related to Sobemoviruses Confers Hypovirulence on the Phytopathogenic Fungus Sclerotinia sclerotiorum. HuSRV1, nt, RdRp
31  2019 A novel thermophilic Aeribacillus bacteriophage AP45 isolated from the Valley of Geysers, Kamchatka: genome analysis suggests the existence of a new genus within the Siphoviridae family. bp
32  2019 A novel toti-like virus from a plant pathogenic oomycete Globisporangium splendens. dsRNA, PpRV1, PsRV1, RdRp
33  2019 A Novel Totivirus Naturally Occurring in Two Different Fungal Genera. dsRNA, nt
34  2019 A novel Waikavirus (the family Secoviridae) genome sequence identified in rapeseed (Brassica napus). BnRV1
35  2019 A Nymphalid-Infecting Group I Alphabaculovirus Isolated from the Major Passion Fruit Caterpillar Pest Dione juno juno (Lepidoptera: Nymphalidae). DijuNPV, DUT, OpMNPV, tmk
36  2019 A Shift in Porcine Circovirus 3 (PCV-3) History Paradigm: Phylodynamic Analyses Reveal an Ancient Origin and Prolonged Undetected Circulation in the Worldwide Swine Population. PCV-2, PCV3
37  2019 A Victorivirus and Two Novel Mitoviruses Co-Infected the Plant Pathogen Nigrospora oryzae. CP, NoMV1, NoMV2, NoRV2, RdRp
38  2019 A Victorivirus from Fusarium asiaticum, the pathogen of Fusarium head blight in China. CP, RdRp
39  2019 Accurate detection of short and long active ORFs using Ribo-seq data. RPFs
40  2019 An isolate of sweet potato chlorotic stunt virus from Brazil with a distinct genome organization. CP, SPCSV
41  2019 An Unusual Extender Unit Is Incorporated into the Modular Polyketide Synthase of Scopranones Biosynthesis. ---
42  2019 Analysis of Soybean Long Non-coding RNAs Reveals a Subset of Small Peptide-Coding Transcripts. lncRNAs
43  2019 Assessment of Genetic Diversity of HTLV-1 ORF-I Sequences Collected from Patients with Different Clinical Profiles. HTLV-1
44  2019 Autophagy Intertwines with Different Diseases-Recent Strategies for Therapeutic Approaches. ---
45  2019 Bacteriophage phiEf11 ORF28 Endolysin, a Multifunctional Lytic Enzyme with Properties Distinct from All Other Identified Enterococcus faecalis Phage Endolysins. ---
46  2019 Biological and molecular characterization of two Anticarsia gemmatalis multiple nucleopolyhedrovirus clones exhibiting contrasting virulence. AgMNPV, SNVs
47  2019 Biological properties and genomics analysis of vB_KpnS_GH-K3, a Klebsiella phage with a putative depolymerase-like protein. ---
48  2019 Characterisation of a novel nucleorhabdovirus infecting alfalfa (Medicago sativa). AaNV, EM, HTS, nt, Vp
49  2019 Characterization and complete genomic analysis of two Salmonella phages, SenALZ1 and SenASZ3, new members of the genus Cba120virus. bp, TEM
50  2019 Characterization and Genome Analysis of Staphylococcus aureus Podovirus CSA13 and Its Anti-Biofilm Capacity. MRSA, MSSA
51  2019 Characterization and genome annotation of a newly detected bacteriophage infecting multidrug-resistant Acinetobacter baumannii. MDR
52  2019 Characterization and genomic analysis of emerging astroviruses causing fatal gout in goslings. GoAstVs
53  2019 Characterization at the Molecular Level using Robust Biochemical Approaches of a New Kinase Protein. SDS-PAGE
54  2019 Characterization of a novel victorivirus isolated from the phytopathogenic fungus Botryosphaeria dothidea. BdVV2, CP, dsRNA, RdRp, SsRV1
55  2019 Characterization of a Regulator pgsR on Endogenous Plasmid p2Sip and Its Complementation for Poly(gamma-glutamic acid) Accumulation in Bacillus amyloliquefaciens. ---
56  2019 Characterization of the bagremycin biosynthetic gene cluster in Streptomyces sp. Tu 4128. BGC
57  2019 Chilo iridescent virus encodes two functional metalloproteases. AcMNPV, CIV, MMP
58  2019 Cloning and identification of the Frigocyclinone biosynthetic gene cluster from Streptomyces griseus strain NTK 97. ---
59  2019 Close evolutionary relationship between rice black-streaked dwarf virus and southern rice black-streaked dwarf virus based on analysis of their bicistronic RNAs. RBSDV, SRBSDV
60  2019 CNN-MGP: Convolutional Neural Networks for Metagenomics Gene Prediction. CNN-MGP
61  2019 Comparative transcriptome analysis reveals the genetic basis underlying the biosynthesis of polysaccharides in Hericium erinaceus. GO, KEGG, nr, PGM, SSRs, UGP
62  2019 Comparative transcriptomics reveals potential genes involved in the vegetative growth of Morchella importuna. DEGs, IS, MS, VM
63  2019 Complete Assembly of the Genome of an Acidovorax citrulli Strain Reveals a Naturally Occurring Plasmid in This Species. BFB, TA
64  2019 Complete genome analysis of a novel phage GW1 lysing Cronobacter. ---
65  2019 Complete genome analysis of a novel temperate bacteriophage induced from Corynebacterium striatum. ---
66  2019 Complete genome sequence analysis of a lytic Shigella flexneri vB-SflS-ISF001 bacteriophage. ---
67  2019 Complete genome sequence analysis of canine bocavirus 1 identified for the first time in domestic cats. CBoV1, CBoVs, nt
68  2019 Complete genome sequence of a new botybirnavirus isolated from a phytopathogenic Alternaria alternata in China. AaBRV1, BpRV1, dsRNA, RdRp
69  2019 Complete genome sequence of a tentative new member of the genus Badnavirus identified in Codonopsis lanceolata. CoVCV, GVCV
70  2019 Complete genome sequence of fowl adenovirus-8b UPM04217 isolate associated with the inclusion body hepatitis disease in commercial broiler chickens in Malaysia reveals intermediate evolution. FAdV-8b
71  2019 Complete Genome Sequence of Lily Symptomless Virus, Isolated from Alstroemeria Plants in Ecuador. 5'-UTR
72  2019 Complete Genome Sequence of vB_EcoP_PR_Kaz2018, a T7-Like Bacteriophage. ---
73  2019 Complete genomic sequence of bacteriophage P23: a novel Vibrio phage isolated from the Yellow Sea, China. ---
74  2019 Complete nucleotide sequence analysis of a novel Bacillus subtilis-infecting phage, BSP38, possibly belonging to a new genus in the subfamily Spounavirinae. ---
75  2019 Complete nucleotide sequence of a new potexvirus, 'Cnidium virus X', isolated from Cnidium officinale in Japan. CnVX
76  2019 Comprehensive analysis of genetic and evolutionary features of the hepatitis E virus. HEV, MCMC
77  2019 Construction and characterization of an infectious cDNA clone of potato virus S developed from selected populations that survived genetic bottlenecks. PVS
78  2019 Construction of cloning-friendly minigenes for mammalian expression of full-length human NF1 isoforms. NF1
79  2019 CRISPR/Cas9 Methodology for the Generation of Knockout Deletions in Caenorhabditis elegans. ---
80  2019 Defective RNA of a Novel Mycovirus with High Transmissibility Detrimental to Biocontrol Properties of Trichoderma spp. ThHV1
81  2019 Definitive demonstration by synthesis of genome annotation completeness. ---
82  2019 Designating ligand specificities to metal uptake ABC transporters in Thermus thermophilus HB8. ABC, SBPs, TMDs
83  2019 Detection and characterization of a theta-replicating plasmid pLP60 from Lactobacillus plantarum PC518 by inverse PCR. IPCR, lTR, STR
84  2019 Detection and Characterization of Cucumis melo Cryptic Virus, Cucumis melo Amalgavirus 1, and Melon Necrotic Spot Virus in Cucumis melo. CmAV1, CmCV, CP, MNSV, RdRp
85  2019 Detection and genome characterization of a novel member of the genus Polerovirus from zucchini (Cucurbita pepo) in China. CpCSV, ZABYV
86  2019 Detection and genome characterization of two novel papillomaviruses and a novel polyomavirus in tree shrew (Tupaia belangeri chinensis) in China. PVs, PyVs
87  2019 Development of Transposon Mutagenesis for Chlamydia muridarum. CAM, GFP
88  2019 Discovery and characterization of a novel alphavirus-like RNA virus from the red firebug Pyrrhocoris apterus L. (Heteroptera). PaV1
89  2019 Discovery and genetic characterization of diverse smacoviruses in Zambian non-human primates. CP, Rep
90  2019 Discovery, characterisation and genomic variation of six novel Gammapapillomavirus types from penile swabs in South Africa. ---
91  2019 Distinct role of outer membrane protein A in the intrinsic resistance of Acinetobacter baumannii and Acinetobacter nosocomialis. AbOmpA, AnOmpA, MICs
92  2019 Double-Stranded RNA High-Throughput Sequencing Reveals a New Cytorhabdovirus in a Bean Golden Mosaic Virus-Resistant Common Bean Transgenic Line. BaCV, BGMV, dsRNA, RSMV, YmCaV
93  2019 Draft genome sequence of broad-spectrum antifungal-producing Bacillus velezensis C4341 isolated from a saline-alkali soil sample in China. ---
94  2019 Draft Genome Sequence of Lactobacillus plantarum CRL681, Isolated from Argentinean Artisanal Fermented Sausages. ---
95  2019 Draft Genome Sequence of Phoma arachidicola Wb2 Causing Peanut Web Blotch in China. ---
96  2019 Draft genome sequence of tetracycline-resistant Klebsiella oxytoca CCTCC M207023 producing 2,3-butanediol isolated from China. ---
97  2019 Dual Analysis of Virus-Host Interactions: The Case of Ostreid herpesvirus 1 and the Cupped Oyster Crassostrea gigas. OsHV-1
98  2019 Elucidating the genetic diversity of Phthorimaea operculella granulovirus (PhopGV). NGS, PhopGV, SNPs
99  2019 Enhanced Expression of QTL qLL9/DEP1 Facilitates the Improvement of Leaf Morphology and Grain Yield in Rice. CJ16, CSSL, HN, HZ, NILs, qRT-PCR, RH, RIL, WYJ
100  2019 Evaluating expression of autophagy-related genes in oriental river prawn Macrobrachium nipponense as potential biomarkers for hypoxia exposure. ATG