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■ Abbreviation / Long Form : OTUs / operational taxonomic units

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Abbreviation:   OTUs  (>> Co-occurring Abbreviation)
Long Form:   operational taxonomic units
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No. Year Title Co-occurring Abbreviation
2022 Characterization of captive and wild 13-lined ground squirrel cecal microbiotas using Illumina-based sequencing. ---
2022 Diversity and structure of the rhizosphere microbial communities of wild and cultivated ginseng. ITS
2022 Effects of Oat Varieties and Growing Locations on Seed-Borne Fungal Communities. HB
2022 Nitrite-dependent anaerobic methane oxidation bacteria and potential in permafrost region of Daxing'an Mountains. ds, n-damo, RDA, TOC
2022 RNA Virosphere in a Marine Zooplankton Community in the Subtropical Western North Pacific. RdRp, SSU
2022 Spatial variability and environmental drivers of cassava-arbuscular mycorrhiza fungi (AMF) associations across Southern Nigeria. AMF
2022 Total nitrogen influence bacterial community structure of active layer permafrost across summer and winter seasons in Ny-Ålesund, Svalbard. AL, PCoA, TC, TN
2021 16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments. ---
2021 A Bayesian Negative Binomial Hierarchical Model for Identifying Diet-Gut Microbiome Associations. HELIUS, MSE, NB
10  2021 A Comparison of the Colonic Microbiome and Volatile Organic Compound Metabolome of Anoplocephala perfoliata Infected and Non-Infected Horses: A Pilot Study. VOC
11  2021 A database and checklist of geometrid moths (Lepidoptera) from Colombia. BOLD, GBIF, MZUS
12  2021 A DNA barcode library for the water mites of Montenegro. BIN, RESL
13  2021 A high abundance of Firmicutes in the intestine of chinese mitten crabs (Eriocheir sinensis) cultured in an alkaline region. ---
14  2021 A mixture of quebracho and chestnut tannins drives butyrate-producing bacteria populations shift in the gut microbiota of weaned piglets. ---
15  2021 A semiparametric model for between-subject attributes: Applications to beta-diversity of microbiome data. FRMs
16  2021 A Survey of Coccidia and Nematodes in Pastured Poultry in the State of Georgia. EPG, OPG
17  2021 Abundance alteration of nondominant species in fecal-associated microbiome of patients with SAPHO syndrome. HC
18  2021 Active Anaerobic Archaeal Methanotrophs in Recently Emerged Cold Seeps of Northern South China Sea. ANME, AOM, NSCS
19  2021 Advantage of 16S rRNA amplicon sequencing in Helicobacter pylori diagnosis. RA
20  2021 Age-Based Variations in the Gut Microbiome of the Shennongjia (Hubei) Golden Snub-Nosed Monkey (Rhinopithecus roxellana hubeiensis). ---
21  2021 Aggravation of airway inflammation in RSV-infected asthmatic mice following infection-induced alteration of gut microbiota. 16S rRNA, AHR, CON, ELISA, IgE, IL, OVA, RSV
22  2021 Agricultural practices linked to shifts in groundwater microbial structure and denitrifying bacteria. eDNA
23  2021 Allopatric differentiation in the Enteromius anoplus complex in South Africa, with the revalidation of Enteromius cernuus and Enteromius oraniensis, and description of a new species, Enteromius mandelai (Teleostei: Cyprinidae). cytb, mtDNA
24  2021 Alteration of bacterial communities and co-occurrence networks as a legacy effect upon exposure to polyethylene residues under field environment. PE
25  2021 Alteration of Gut Microbiome and Correlated Lipid Metabolism in Post-Stroke Depression. PSD
26  2021 Alteration of the gut microbiota in post-weaned calves following recovery from bovine coronavirus-mediated diarrhea. BCoV
27  2021 Alterations in Gastric Mucosal Microbiota in Gastric Carcinogenesis: A Systematic Review and Meta-Analysis. GC, MD
28  2021 Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters. ASVs
29  2021 An investigation into the anaerobic spoilage microbiota of beef carcass and rump steak cuts using high- throughput sequencing. ---
30  2021 Analysing microbiome intervention design studies: Comparison of alternative multivariate statistical methods. ---
31  2021 Analysis of bacterial communities in sponges and coral inhabiting Red Sea, using barcoded 454 pyrosequencing. PCoA
32  2021 Analysis of microbial community diversity of muscadine grape skins. ---
33  2021 Analysis of Microbiota and Mycobiota in Fungal Ball Rhinosinusitis: Specific Interaction between Aspergillus fumigatus and Haemophilus influenza? DE, FB, NFRS, RS, TM
34  2021 Analysis of rhizobacterial community associated with the occurrence of Ganoderma basal stem rot disease in oil palm by Illumina next-generation sequencing. NGS
35  2021 Analysis of Salivary Microbiome and Its Association With Periodontitis in Patients With Obstructive Sleep Apnea. OSA, PSG
36  2021 Analysis of the Bacterial Flora of Sensitive Facial Skin Among Women in Guangzhou. NS, SS
37  2021 Analysis on Microbial Profiles & Components of Bile in Patients with Recurrent CBD Stones after Endoscopic CBD Stone Removal: A Preliminary Study. CBD, ERCP
38  2021 Application of Next-Generation Sequencing for the Determination of the Bacterial Community in the Gut Contents of Brackish Copepod Species (Acartia hudsonica, Sinocalanus tenellus, and Pseudodiaptomus inopinus). ---
39  2021 Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding. ---
40  2021 Assessing the microbiota of recycled bedding sand on a Wisconsin dairy farm. ---
41  2021 Association of Gut Microbiome and Vitamin D Deficiency in Knee Osteoarthritis Patients: A Pilot Study. KOA
42  2021 Bacterial Abundance, Diversity and Activity During Long-Term Colonization of Non-biodegradable and Biodegradable Plastics in Seawater. OXO, PCL, PE, PHBV, PLA, PS
43  2021 Bacterial Communities Present Distinct Co-occurrence Networks in Sediment and Water of the Thermokarst Lakes in the Yellow River Source Area. ---
44  2021 Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors. ---
45  2021 Bacterial Diversity and Community Structure of a Municipal Solid Waste Landfill: A Source of Lignocellulolytic Potential. ---
46  2021 Bacterial diversity changes in agricultural soils influenced by poultry litter fertilization. ---
47  2021 Bacteriome depiction and the trophic status of the largest Northern highland lake from Andes system: Lago de Tota, Boyaca, Colombia. Chl-a, DOC, POM, TN
48  2021 BEExact: a Metataxonomic Database Tool for High-Resolution Inference of Bee-Associated Microbial Communities. ASVs
49  2021 Biodiversity of Root Endophytic Fungi from Oxyria sinensis Grown in Metal-Polluted and Unpolluted Soils in Yunnan Province, Southwestern China. AMF, DSEs, MA, nMA
50  2021 Biogeography of culturable marine bacteria from both poles reveals that 'everything is not everywhere' at the genomic level. ---
51  2021 Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding. ASVs, RDP
52  2021 Biological Ingredient Analysis of Traditional Herbal Patent Medicine Fuke Desheng Wan Using the Shotgun Metabarcoding Approach. FKDSW
53  2021 BTEX biodegradation is linked to bacterial community assembly patterns in contaminated groundwater ecosystem. BTEX, RDA
54  2021 California strawberry consumption increased the abundance of gut microorganisms related to lean body weight, health and longevity in healthy subjects. BA, SBP
55  2021 Cervical Squamous Intraepithelial Lesions Are Associated with Differences in the Vaginal Microbiota of Mexican Women. HPV, MaAsLin, SIL
56  2021 Changes in gut microbiota composition and diversity associated with post-cholecystectomy diarrhea. HC, PC, PCD, PCND
57  2021 Changes in the Gut Microbiome and Predicted Functional Metabolic Effects in an Australian Parkinson's Disease Cohort. PD, PwP
58  2021 Changes in the Microbiome of Milk in Cows with Mastitis. ---
59  2021 Changes in the predicted function of the rumen bacterial community of Japanese Black beef cattle during the fattening stages according to Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. KEGG
60  2021 Characterization of the gut microbiome in wild rocky mountainsnails (Oreohelix strigosa). ---
61  2021 Characterization of the Human Oropharyngeal Microbiomes in SARS-CoV-2 Infection and Recovery Patients. CCs, COVID-19, HS, SCs
62  2021 Community composition and functional prediction of prokaryotes associated with sympatric sponge species of southwestern Atlantic coast. ---
63  2021 Community Structure and Function of Epiphytic Bacteria Associated With Myriophyllum spicatum in Baiyangdian Lake, China. CCA, qPCR, TP
64  2021 Comparative Analysis of Milk Microbiomes and Their Association with Bovine Mastitis in Two Farms in Central Russia. LEfSe
65  2021 Comparative Analysis of the Cultured and Total Bacterial Community in the Wheat Rhizosphere Microbiome Using Culture-Dependent and Culture-Independent Approaches. PGP
66  2021 Comparative Analysis of the Microbiota Between Rumen and Duodenum of Twin Lambs Based on Diets of Ceratoides or Alfalfa. GIT, HFLP, LFHP
67  2021 Comparative Evaluation of the Ileum Microbiota Composition in Piglets at Different Growth Stages. KEGG
68  2021 Comparative Genome Analysis Reveals Differences in Biocontrol Efficacy According to Each Individual Isolate Belonging to Rhizospheric Fluorescent Pseudomonads. ---
69  2021 Comparison of gut microbiota in autism spectrum disorders and neurotypical boys in China: A case-control study. ASDs
70  2021 Comparison of Microbial Populations in Saliva and Feces from Healthy and Celiac Adolescents with Conventional and Molecular Approaches after Cultivation on Gluten-Containing Media: An Exploratory Study. CD, HV
71  2021 Composition of Fecal Microbiota in Grazing and Feedlot Angus Beef Cattle. ---
72  2021 Composition of the Fecal Microbiota of Piglets at Various Growth Stages. GI
73  2021 Compositional Differences in the Oral Microbiome of E-cigarette Users. NSNV, PD
74  2021 Comprehensive coverage of human last meal components revealed by a forensic DNA metabarcoding approach. ---
75  2021 Comprehensive Ecological and Geographic Characterization of Eukaryotic and Prokaryotic Microbiomes in African Anopheles. ---
76  2021 Constructing a Defined Starter for Multispecies Vinegar Fermentation via Evaluating the Vitality and Dominance of Functional Microbes in Autochthonous Starter. AAF, MG, MT
77  2021 Continental-scale distribution and diversity of Ceratobasidium orchid mycorrhizal fungi in Australia. OMF
78  2021 Contrasting Responses of Arbuscular Mycorrhizal Fungal Families to Simulated Climate Warming and Drying in a Semiarid Shrubland. AMF, RR, SMRT
79  2021 Coupling the endophytic microbiome with the host transcriptome in olive roots. DEGs
80  2021 Cross-Hemisphere Study Reveals Geographically Ubiquitous, Plastic-Specific Bacteria Emerging from the Rare and Unexplored Biosphere. ---
81  2021 Cyclical Patterns Affect Microbial Dynamics in the Water Basin of a Nuclear Research Reactor. NMDS
82  2021 Cytotoxic T-Cell Trafficking Chemokine Profiles Correlate With Defined Mucosal Microbial Communities in Colorectal Cancer. CCL5, CRC, CTTCs, MAM
83  2021 Dataset on endophytic and rhizoplane fungi on the roots of wild grapevine in Croatia and Bosnia and Herzegovina. ---
84  2021 Deciphering the diet of a wandering spider (Phoneutria boliviensis; Araneae: Ctenidae) by DNA metabarcoding of gut contents. COI
85  2021 Delimiting cryptic species within the brown-banded bamboo shark, Chiloscyllium punctatum in the Indo-Australian region with mitochondrial DNA and genome-wide SNP approaches. SNPs
86  2021 Depth-dependent influence of biochar application on the abundance and community structure of diazotrophic under sugarcane growth. BC, HTS, OM, TC, TN
87  2021 Detection of Culturable Bacteria from Tomato Seeds on Media Semi-selective for the Canker Pathogen. ---
88  2021 Detection of the Core Bacteria in Colostrum and Their Association with the Rectal Microbiota and with Milk Composition in Two Dairy Cow Farms. SCC
89  2021 Deviated and early unsustainable stunted development of gut microbiota in children with autism spectrum disorder. ASD, AUC, NT
90  2021 Diet-induced microbiome shifts of sympatric overwintering birds. KEGG
91  2021 Differences in gut microbiota structure in patients with stages 4-5 chronic kidney disease. CKD, GKA
92  2021 Different Amounts of Nitrogen Fertilizer Applications Alter the Bacterial Diversity and Community Structure in the Rhizosphere Soil of Sugarcane. ---
93  2021 Different Engineering Designs Have Profoundly Different Impacts on the Microbiome and Nitrifying Bacterial Populations in Municipal Wastewater Treatment Bioreactors. CAS, NOB
94  2021 Differential impact of Bt-transgenic rice plantings on bacterial community in three niches over consecutive years. Bt, LE, PCoA, RE, RS
95  2021 Diluted Luria-Bertani medium vs. sewage sludge as growth media: comparison of community structure and diversity in the culturable bacteria. LB, WSS
96  2021 Ding's herbal enema treats dextran sulfate sodium-induced colitis in mice by regulating the gut microbiota and maintaining the Treg/Th17 cell balance. DSS, Th, Treg, UC
97  2021 Disentangling the abundance and structure of Vibrio communities in a semi-enclosed Bay with mariculture (Dongshan Bay, Southern China). ---
98  2021 Distinct Compartmentalization of Microbial Community and Potential Metabolic Function in the Fruiting Body of Tricholoma matsutake. EMF
99  2021 Distribution of Bacterial Endophytes in the Non-lesion Tissues of Potato and Their Response to Potato Common Scab. PCS, REL, SE, SEL, TE, TEH
100  2021 Distribution patterns of Acidobacteriota in different fynbos soils. SDs