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■ Abbreviation / Long Form : PHD / plant homeodomain

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Total Number of Papers: 295
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Abbreviation:   PHD  (>> Co-occurring Abbreviation)
Long Form:   plant homeodomain
 Abbreviation Variation
 Long Form Variation
 Pair(Abbreviation/Long Form) Variation
No. Year Title Co-occurring Abbreviation
2020 AcademH, a lineage of Academ DNA transposons encoding helicase found in animals and fungi. TSDs
2020 Aluminium-induced synaptic plasticity injury via the PHF8-H3K9me2-BDNF signalling pathway. BDNF, fEPSP, H3K9me2, LTP
2020 Association of Basophil-Expressing Genes with Effectiveness of Sublingual Immunotherapy. CNV, HR, NR
2020 Characterization of the plant homeodomain (PHD) reader family for their histone tail interactions. PTMs
2020 Macromolecular Crowding Increases the Affinity of the PHD of ING4 for the Histone H3K4me3 Mark. ---
2020 Molecular Basis for the PZP Domain of BRPF1 Association with Chromatin. BRPF1, NCP
2020 Small Molecules Targeting the Specific Domains of Histone-Mark Readers in Cancer Therapy. BRD, ChD, MBT
2020 TCF19 Promotes Cell Proliferation through Binding to the Histone H3K4me3 Mark. FHA, TCF19
2020 The PHD finger of Arabidopsis SIZ1 recognizes trimethylated histone H3K4 mediating SIZ1 function and abiotic stress response. H3K4
10  2019 Atypical plant homeodomain of UBR7 functions as an H2BK120Ub ligase and breast tumor suppressor. UBR7
11  2019 CLP1, a Novel Plant Homeo Domain Protein, Participates in Regulating Cellulase Gene Expression in the Filamentous Fungus Trichoderma reesei. ---
12  2019 Coordinated Dialogue between UHRF1 and DNMT1 to Ensure Faithful Inheritance of Methylated DNA Patterns. CpG, DNMTs, RING
13  2019 Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis. ---
14  2019 Evolution and conservation of polycomb repressive complex 1 core components and putative associated factors in the green lineage. AL1-7, BAT, BMI1, CHROMO, ChSh, EBS, EMF1, PcG, PRC1, RAWUL, RING1, SHL, VRN1
15  2019 Genome wide survey, evolution and expression analysis of PHD finger genes reveal their diverse roles during the development and abiotic stress responses in Brassica rapa L. ---
16  2019 Genome-wide identification and expression analysis of the PHD-finger gene family in Solanum tuberosum. GO, StPHD
17  2019 Identification and sequencing of the gene encoding DNA methyltransferase 3 (DNMT3) from sea cucumber, Apostichopus japonicus. AdoMet-MTase, DNMT, DNMT3
18  2019 Identification of Phf16 and Pnpla3 as new adipogenic factors regulated by phytochemicals. G0S2, HMOX1, PNPLA3
19  2019 Mutation in a PHD-finger protein MS4 causes male sterility in soybean. MMD1
20  2019 OsMS1 functions as a transcriptional activator to regulate programmed tapetum development and pollen exine formation in rice. PCD, TIP2
21  2019 PHD finger protein 5A promoted lung adenocarcinoma progression via alternative splicing. AS, LUAD, NSCLC, OS
22  2019 RAG2 localization and dynamics in the pre-B cell nucleus. Core
23  2019 Silencing expression of PHF14 in glioblastoma promotes apoptosis, mitigates proliferation and invasiveness via Wnt signal pathway. EMT
24  2019 Structural basis for histone H3K4me3 recognition by the N-terminal domain of the PHD finger protein Spp1. DSB, Sc_Spp1NTD
25  2019 Targeting non-bromodomain chromatin readers. ---
26  2019 The Roles of Human DNA Methyltransferases and Their Isoforms in Shaping the Epigenome. CpG, DNMT3L, DNMTs, RING
27  2019 The Tumor Suppressor ING5 Is a Dimeric, Bivalent Recognition Molecule of the Histone H3K4me3 Mark. ING
28  2019 Thymoquinone-Induced Reactivation of Tumor Suppressor Genes in Cancer Cells Involves Epigenetic Mechanisms. RING, TQ, TSGs
29  2018 An Intramolecular Interaction of UHRF1 Reveals Dual Control for Its Histone Association. PBR, TTD
30  2018 Characteristics of a PHD Finger Subtype. DPFs, xCDxCDx-PHD
31  2018 Dual recognition of H3K4me3 and H3K27me3 by a plant histone reader SHL. BAH, SHL
32  2018 Genome-wide identification of PHD-finger genes and expression pattern analysis under various treatments in moso bamboo (Phyllostachys edulis). ABA, Rh, Sh, YL
33  2018 Investigations on small molecule inhibitors targeting the histone H3K4 tri-methyllysine binding PHD-finger of JmjC histone demethylases. ---
34  2018 PHD finger protein 1 (PHF1) is a novel reader for histone H4R3 symmetric dimethylation and coordinates with PRMT5-WDR77/CRL4B complex to promote tumorigenesis. CRL4B, H2AK119ub1, H4R3, PHF1
35  2018 Plant Homeodomain Genes Play Important Roles in Cryptococcal Yeast-Hypha Transition. ---
36  2018 Resetting the epigenetic balance of Polycomb and COMPASS function at enhancers for cancer therapy. PRC2
37  2018 Structure-based discovery of selective BRPF1 bromodomain inhibitors. ---
38  2018 Targeting Ligandable Pockets on Plant Homeodomain (PHD) Zinc Finger Domains by a Fragment-Based Approach. ---
39  2018 The RAG-2 Inhibitory Domain Gates Accessibility of the V(D)J Recombinase to Chromatin. ---
40  2017 A Histone Code Reader and a Transcriptional Activator Interact to Regulate Genes for Salt Tolerance. ---
41  2017 A histone-mimicking interdomain linker in a multidomain protein modulates multivalent histone binding. BAZ2B, BRD
42  2017 A novel PHD-finger protein 14/KIF4A complex overexpressed in lung cancer is involved in cell mitosis regulation and tumorigenesis. ---
43  2017 H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase. RAG
44  2017 Histone demethylase PHF8 promotes progression and metastasis of gastric cancer. GC
45  2017 Integrative genomic and transcriptomic analysis for pinpointing recurrent alterations of plant homeodomain genes and their clinical significance in breast cancer. ASXL1, BET, ER, PHFs, PYGO2, ZMYND8
46  2017 Maintenance of macrophage transcriptional programs and intestinal homeostasis by epigenetic reader SP140. CD, DSS, PBMCs, SNPs, TNF
47  2017 Pygopus2 inhibits the efficacy of paclitaxel-induced apoptosis and induces multidrug resistance in human glioma cells. Bcl-2, MDR1, PTX, Pygo2
48  2017 SHPRH regulates rRNA transcription by recognizing the histone code in an mTOR-dependent manner. mTOR, rDNA
49  2017 Structural basis of molecular recognition of helical histone H3 tail by PHD finger domains. ---
50  2017 Structural Insight into Recognition of Methylated Histone H3K4 by Set3. ---
51  2017 The Chromatin-Associated Phf12 Protein Maintains Nucleolar Integrity and Prevents Premature Cellular Senescence. HDAC1, MEFs, SA-beta-gal
52  2017 The tumor suppressor inhibitor of growth 4 binds double-stranded DNA through its disordered central region. ING4
53  2017 UHRF2 decreases H3K9ac expression by interacting with it through the PHD and SRA/YDG domain in HepG2 hepatocellular carcinoma cells. HCC, UHRF2
54  2016 1H, 13C and 15N resonance assignments and secondary structure of the human PHF6-ePHD1 domain. ePHD, UBF
55  2016 Antagonistic roles for the ubiquitin ligase Asr1 and the ubiquitin-specific protease Ubp3 in subtelomeric gene silencing. Pol II, RING, RPC
56  2016 Backbone resonance assignments for the PHD-Bromo dual-domain of the human chromatin reader TRIM24. ---
57  2016 Chromatin condensation and recruitment of PHD finger proteins to histone H3K4me3 are mutually exclusive. ---
58  2016 Combinatorial Histone Readout by the Dual Plant Homeodomain (PHD) Fingers of Rco1 Mediates Rpd3S Chromatin Recruitment and the Maintenance of Transcriptional Fidelity. ---
59  2016 Combined Action of Histone Reader Modules Regulates NuA4 Local Acetyltransferase Function but Not Its Recruitment on the Genome. ---
60  2016 Combined Interactions of Plant Homeodomain and Chromodomain Regulate NuA4 Activity at DNA Double-Strand Breaks. DSBs
61  2016 Efficient differentiation of murine embryonic stem cells requires the binding of CXXC finger protein 1 to DNA or methylated histone H3-Lys4. Cfp1, ES
62  2016 Genome-wide identification, classification and expression analysis of the PHD-finger protein family in Populus trichocarpa. qRT-PCR
63  2016 Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination. GS, GSR1
64  2016 Hemi-methylated DNA opens a closed conformation of UHRF1 to facilitate its histone recognition. H3K9, hm-DNA, SRA, TTD
65  2016 Latcripin-13 domain induces apoptosis and cell cycle arrest at the G1 phase in human lung carcinoma A549 cells. BLIP-II, CDK4
66  2016 Logical design of an anti-cancer agent targeting the plant homeodomain in Pygopus2. Pygo2
67  2016 Long noncoding RNA UPAT promotes colon tumorigenesis by inhibiting degradation of UHRF1. lncRNAs, RING, TrCP
68  2016 Mechanism of Histone H3K4me3 Recognition by the Plant Homeodomain of Inhibitor of Growth 3. ING3PHD
69  2016 Multifaceted Histone H3 Methylation and Phosphorylation Readout by the Plant Homeodomain Finger of Human Nuclear Antigen Sp100C. H3S10ph, H3T3ph
70  2016 Novel ATRX gene damaging missense mutation c.6740A>C segregates with profound to severe intellectual deficiency without alpha thalassaemia. XLID
71  2016 OBE3 and WUS Interaction in Shoot Meristem Stem Cell Regulation. obe3-2, SAM
72  2016 Pathogenesis of Borjeson-Forssman-Lehmann syndrome: Insights from PHF6 function. BFLS
73  2016 PHF20 Readers Link Methylation of Histone H3K4 and p53 with H4K16 Acetylation. HAT
74  2016 Phosphoinositides in the nucleus and myogenic differentiation: how a nuclear turtle with a PHD builds muscle. TBP
75  2016 RAG1 targeting in the genome is dominated by chromatin interactions mediated by the non-core regions of RAG1 and RAG2. ---
76  2016 Structural basis for PHDVC5HCHNSD1-C2HRNizp1 interaction: implications for Sotos syndrome. C2HRNizp1
77  2016 The Human Mixed Lineage Leukemia 5 (MLL5), a Sequentially and Structurally Divergent SET Domain-Containing Protein with No Intrinsic Catalytic Activity. MLL5, SET
78  2016 The pleiotropic effects of the seed germination inhibitor germostatin. ABA, GS, GSR1
79  2016 The sub-nucleolar localization of PHF6 defines its role in rDNA transcription and early processing events. DFC, FC, IGS, pRNA
80  2016 UHRF1 promotes human osteosarcoma cell invasion by downregulating the expression of E‑cadherin in an Rb1‑dependent manner. EMT, RB1
81  2016 ZMYND8 Reads the Dual Histone Mark H3K4me1-H3K14ac to Antagonize the Expression of Metastasis-Linked Genes. H3K14
82  2015 (1)H, (13)C, and (15)N resonance assignments for the tandem PHD finger motifs of human CHD4. CHD4
83  2015 A RING to rule them all? Insights into the Map3k1 PHD motif provide a new mechanistic understanding into the diverse roles of Map3k1. ---
84  2015 DPF2 regulates OCT4 protein level and nuclear distribution. ---
85  2015 Functional analysis of a Wheat Homeodomain protein, TaR1, reveals that host chromatin remodelling influences the dynamics of the switch to necrotrophic growth in the phytopathogenic fungus Zymoseptoria tritici. ---
86  2015 Functional proteomics of the epigenetic regulators ASXL1, ASXL2 and ASXL3: a convergence of proteomics and epigenetics for translational medicine. ---
87  2015 Histone Peptide Recognition by KDM5B-PHD1: A Case Study. ---
88  2015 Interaction of the Jhd2 Histone H3 Lys-4 Demethylase with Chromatin Is Controlled by Histone H2A Surfaces and Restricted by H2B Ubiquitination. ---
89  2015 Molecular Insights into Inhibition of the Methylated Histone-Plant Homeodomain Complexes by Calixarenes. ---
90  2015 PHDs govern plant development. ---
91  2015 PHRF1 promotes genome integrity by modulating non-homologous end-joining. NHEJ
92  2015 Systematic Analysis of the Maize PHD-Finger Gene Family Reveals a Subfamily Involved in Abiotic Stress Response. ---
93  2015 The Alfin-like homeodomain finger protein AL5 suppresses multiple negative factors to confer abiotic stress tolerance in Arabidopsis. ALs
94  2015 The PHD motif of Map3k1 activates cytokine-dependent MAPK signaling. ---
95  2015 The plant homeodomain finger protein MESR4 is essential for embryonic development in Drosophila. dp-ERK, Fas3, MESR4
96  2014 A PWWP domain-containing protein targets the NuA3 acetyltransferase complex via histone H3 lysine 36 trimethylation to coordinate transcriptional elongation at coding regions. ---
97  2014 Accessibility of different histone H3-binding domains of UHRF1 is allosterically regulated by phosphatidylinositol 5-phosphate. PBR, TTD
98  2014 Chromatin-dependent repression of the Arabidopsis floral integrator genes involves plant specific PHD-containing proteins. EBS, FT, SHL, SOC1
99  2014 Histone methylation and V(D)J recombination. RAG1, RSS
100  2014 HSI2/VAL1 PHD-like domain promotes H3K27 trimethylation to repress the expression of seed maturation genes and complex transgenes in Arabidopsis seedlings. GSTF8, HSI2, VAL1