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■ Abbreviation / Long Form : PPDK / pyruvate phosphate dikinase

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Total Number of Papers: 175
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Abbreviation:   PPDK  (>> Co-occurring Abbreviation)
Long Form:   pyruvate phosphate dikinase
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No. Year Title Co-occurring Abbreviation
2020 A New SNP in Rice Gene Encoding Pyruvate Phosphate Dikinase (PPDK) Associated with Floury Endosperm. CAPS, cyOsPPDK, FLO4-5, SNP
2020 Carbon fixation gene expression in Skeletonema marinoi in nitrogen-, phosphate-, silicate-starvation, and low-temperature stress exposure. RT-qPCR
2020 Cold acclimation of mesophyll conductance, bundle-sheath conductance and leakiness in Miscanthusgiganteus. CA, PEPC, RuBisCO
2020 Conversion of phosphoenolpyruvate to pyruvate in Thermoanaerobacterium saccharolyticum. EMP, PEP, PYK
2020 Identification and evolution of C4 photosynthetic pathway genes in plants. NAPD-ME, qRT-PCR
2019 Activities of key enzymes in the C4 pathway and anatomy of sugarcane infected by Leifsonia xyli subsp. xyli. BSC, dpi, Lxx, MC, NADP-ME, PEPC
2019 Genome-wide identification of genes involved in carbon fixation in Saccharina japonica and responses of putative C4-related genes to bicarbonate concentration and light intensity. PEPCK
2019 Metabolic Basis for Mutualism between Gut Bacteria and Its Impact on the Drosophila melanogaster Host. ---
2019 The Carbon Switch at the Level of Pyruvate and Phosphoenolpyruvate in Sulfolobus solfataricus P2. ED, EMP
10  2019 The H3K27me3 demethylase REF6 promotes leaf senescence through directly activating major senescence regulatory and functional genes in Arabidopsis. Chl, EIN2, LOX-1, NTL9, NYE1, ORE1, PAD4, REF6, SAGs
11  2019 Thermodynamic analysis of the pathway for ethanol production from cellobiose in Clostridium thermocellum. ADH, ALDH, EFMs, FBA, GAPDH, GAPN, MDF, PFK, PFK-ATP
12  2018 A DNA-scaffold platform enhances a multi-enzymatic cycling reaction. Fluc, ss
13  2018 A new SNP in cyOsPPDK gene is associated with floury endosperm in Suweon 542. cyOsPPDK
14  2018 Functions of maize genes encoding pyruvate phosphate dikinase in developing endosperm. ---
15  2018 Gluconeogenesis and nitrogen metabolism in maize. PEPCK
16  2018 Gluconeogenesis is essential for trypanosome development in the tsetse fly vector. G6P, PEPCK
17  2018 Maize leaf PPDK regulatory protein isoform-2 is specific to bundle sheath chloroplasts and paradoxically lacks a Pi-dependent PPDK activation activity. BSCs, PDRP
18  2018 The anaplerotic node is essential for the intracellular survival of Mycobacterium tuberculosis. ANA, MEZ, Mtb, PCA, PCK, PEP, TB
19  2018 The Fast-Growing Brucella suis Biovar 5 Depends on Phosphoenolpyruvate Carboxykinase and Pyruvate Phosphate Dikinase but Not on Fbp and GlpX Fructose-1,6-Bisphosphatases or Isocitrate Lyase for Full Virulence in Laboratory Models. Mae, pckA
20  2018 The intracellular distribution of inorganic carbon fixing enzymes does not support the presence of a C4 pathway in the diatom Phaeodactylum tricornutum. CCM, GFP
21  2018 The Manganese-Dependent Pyruvate Kinase PykM Is Required for Wild-Type Glucose Utilization by Brucella abortus 2308 and Its Virulence in C57BL/6 Mice. Mn
22  2017 Glycolysis without pyruvate kinase in Clostridium thermocellum. ODC, PEP, PEPCK
23  2017 Histone Acetylation Modifications Affect Tissue-Dependent Expression of Poplar Homologs of C4 Photosynthetic Enzyme Genes. CA, PCK, PEPC
24  2017 In Vitro Testing of Potential Entamoeba histolytica Pyruvate Phosphate Dikinase Inhibitors. ATP, MICs
25  2017 Mapping and comparative proteomic analysis of the starch biosynthetic pathway in rice by 2D PAGE/MS. AGPase, PFK, PFP, PGM, SBE, SDBE
26  2017 On the potential alternate binding change mechanism in a dimeric structure of Pyruvate Phosphate Dikinase. CD, NBD
27  2017 Responses of Ottelia alismoides, an aquatic plant with three CCMs, to variable CO2 and light. CAM, PEPC
28  2017 Small-molecule inhibition of pyruvate phosphate dikinase targeting the nucleotide binding site. PEP
29  2017 Structural intermediates and directionality of the swiveling motion of Pyruvate Phosphate Dikinase. ---
30  2017 Trapped intermediate state of plant pyruvate phosphate dikinase indicates substeps in catalytic swiveling domain mechanism. PEP
31  2016 Kinetic and molecular characterization of the pyruvate phosphate dikinase from Trypanosoma cruzi. PEP, Pi
32  2016 Maize plants can enter a standby mode to cope with chilling stress. GGR, PEPC, SLA
33  2016 Metabolic networks to generate pyruvate, PEP and ATP from glycerol in Pseudomonas fluorescens. ACK, AK, ATP, GDH, PC, PEP, PEPC, PEPS, PK, SLP
34  2016 Phospho-transfer networks and ATP homeostasis in response to an ineffective electron transport chain in Pseudomonas fluorescens. ACK, AK, ETC, NDPK, PEP, PEPC, PEPS, TCA
35  2016 Phosphoenolpyruvate carboxykinase, pyruvate orthophosphate dikinase and isocitrate lyase in both tomato fruits and leaves, and in the flesh of peach and some other fruits. FW, ICL, PEPCK
36  2016 Proteomic analysis of maize grain development using iTRAQ reveals temporal programs of diverse metabolic processes. DAP, DEPs, iTRAQ, ROS
37  2016 Structural Basis of Reversible Phosphorylation by Maize Pyruvate Orthophosphate Dikinase Regulatory Protein. P-loop, PDRP
38  2016 The nature of the CO2 -concentrating mechanisms in a marine diatom, Thalassiosira pseudonana. CAs, CCMs, PEP
39  2015 A novel ATP-generating machinery to counter nitrosative stress is mediated by substrate-level phosphorylation. AK, CL, NDPK, PEPC, RNS, TCA
40  2015 Arabidopsis uses two gluconeogenic gateways for organic acids to fuel seedling establishment. PCK
41  2015 Glycine metabolism and anti-oxidative defence mechanisms in Pseudomonas fluorescens. FDH, GDH, GTA, ICL, PEPC
42  2015 Transgenic perturbation of the decarboxylation phase of Crassulacean acid metabolism alters physiology and metabolism but has only a small effect on growth. CAM, ME, PPC
43  2014 Brucella abortus depends on pyruvate phosphate dikinase and malic enzyme but not on Fbp and GlpX fructose-1,6-bisphosphatases for full virulence in laboratory models. Mae, pckA
44  2014 Contribution of pyruvate phosphate dikinase in the maintenance of the glycosomal ATP/ADP balance in the Trypanosoma brucei procyclic form. PEPCK, PGKC
45  2014 Development of a novel telomerase assay using the PPDK-luciferin-luciferase detection system. CV, PCR, PLLBA, S/N, TRAP
46  2014 Gluconeogenesis in Leishmania mexicana: contribution of glycerol kinase, phosphoenolpyruvate carboxykinase, and pyruvate phosphate dikinase. GK, PEPCK
47  2014 Occurrence of a number of enzymes involved in either gluconeogenesis or other processes in the pericarp of three cultivars of grape (Vitis vinifera L.) during development. GS, ICL, PEPC, PEPCK, Vitis vinifera L
48  2014 Phylogeny of C4-photosynthesis enzymes based on algal transcriptomic and genomic data supports an archaeal/proteobacterial origin and multiple duplication for most C4-related genes. AST, NAD-ME, NADP-ME, PCK
49  2014 Post-translational modification of the pyruvate phosphate dikinase from Trypanosoma cruzi. ---
50  2014 Posttranslational Modification of Maize Chloroplast Pyruvate Orthophosphate Dikinase Reveals the Precise Regulatory Mechanism of Its Enzymatic Activity. PDRP, Ser, Thr
51  2014 Production of recombinant Entamoeba histolytica pyruvate phosphate dikinase and its application in a lateral flow dipstick test for amoebic liver abscess. ALA, IPTG, LFD, Ni-NTA, OD, rPPDK
52  2014 Pyramiding expression of maize genes encoding phosphoenolpyruvate carboxylase (PEPC) and pyruvate orthophosphate dikinase (PPDK) synergistically improve the photosynthetic characteristics of transgenic wheat. PEPC, PEPC, QRT-PCR
53  2014 Structural and evolutionary characteristics of pyruvate phosphate dikinase in Giardia lamblia and other amitochondriate protozoa. ATP, PEP
54  2014 Zinc toxicity and ATP production in Pseudomonas fluorescens. CL, NADPH, PEPC, SLP
55  2013 Activities of principal photosynthetic enzymes in green macroalga Ulva linza: functional implication of C₄ pathway in CO₂ assimilation. PCK, PEPC, RuBPCase
56  2013 Atypical glycolysis in Clostridium thermocellum. PEP
57  2013 Design, synthesis, and evaluation of inhibitors of pyruvate phosphate dikinase. PEP
58  2013 The role of C4 metabolism in the marine diatom Phaeodactylum tricornutum. ---
59  2012 A possible role for C4 photosynthetic enzymes in tolerance of Zea mays to NaCl. MDH, PEPC
60  2012 Adaptation responses in C4 photosynthesis of maize under salinity. BSCs, NAD-MDH, NADP-MDH, NADP-ME, PEPCase
61  2012 Calmodulin expression during Giardia intestinalis differentiation and identification of calmodulin-binding proteins during the trophozoite stage. CaM, CaMBPs
62  2012 Evidence of coexistence of C₃ and C₄ photosynthetic pathways in a green-tide-forming alga, Ulva prolifera. PCK, PEPC, RuBPCase
63  2012 Preliminary analysis to target pyruvate phosphate dikinase from wolbachia endosymbiont of Brugia malayi for designing anti-filarial agents. PK, wBm
64  2011 Characterization of the recombinant pyrophosphate-dependent 6-phosphofructokinases from Methylomicrobium alcaliphilum 20Z and Methylococcus capsulatus Bath. ATP-PFK, EMP, PPi-PFK, RuMP
65  2011 Conserved and divergent rhythms of crassulacean acid metabolism-related and core clock gene expression in the cactus Opuntia ficus-indica. CAM, MDH, NADP-ME, PEPC, PPCK
66  2011 Functional evolution of C(4) pyruvate, orthophosphate dikinase. PDRP
67  2011 Magnesium and cell energetics in plants under anoxia. PK
68  2011 Phosphoenolpyruvate carboxykinase in cherry (Prunus avium L.) fruit during development. AspAT, GS, PEPC, PEPCK
69  2011 Robust control of PEP formation rate in the carbon fixation pathway of C(4) plants by a bi-functional enzyme. PEP, RP
70  2011 The metabolic reprogramming evoked by nitrosative stress triggers the anaerobic utilization of citrate in Pseudomonas fluorescens. ACN, CL, NiR, NO, NR, PEPC, RNS, ROS, SNP, TCA
71  2011 The pyruvate, orthophosphate dikinase regulatory proteins of Arabidopsis are both bifunctional and interact with the catalytic and nucleotide-binding domains of pyruvate, orthophosphate dikinase. RP
72  2011 What can enzymes of C₄ photosynthesis do for C₃ plants under stress? NADP-ME, PEPC
73  2010 An enzyme-coupled ultrasensitive luminescence assay for protein methyltransferases. APRT, ATP, MTAN, PMTs
74  2010 Cytosolic pyruvate,orthophosphate dikinase functions in nitrogen remobilization during leaf senescence and limits individual seed growth and nitrogen content. ---
75  2009 Detecting ricin: sensitive luminescent assay for ricin A-chain ribosome depurination kinetics. APRTase, RIP, RTA, SRL
76  2009 Eusynstyelamides A, B, and C, nNOS inhibitors, from the ascidian Eusynstyela latericius. nNOS
77  2009 Nano-sized bacterial magnetic particles displaying pyruvate phosphate dikinase for pyrosequencing. BacMPs
78  2009 Proteins from multiple metabolic pathways associate with starch biosynthetic enzymes in high molecular weight complexes: a model for regulation of carbon allocation in maize amyloplasts. SBEIIb, SSIIa
79  2008 Cool C4 photosynthesis: pyruvate Pi dikinase expression and activity corresponds to the exceptional cold tolerance of carbon assimilation in Miscanthus x giganteus. ---
80  2008 Development of bioluminescent pyrophosphate assay using pyruvate phosphate dikinase and its application to single-nucleotide polymorphism analysis. SNP
81  2008 Identification of three proteins up-regulated by raw starch in Cytophaga sp. RSDAs
82  2008 Molecular modeling on pyruvate phosphate dikinase of Entamoeba histolytica and in silico virtual screening for novel inhibitors. ---
83  2008 Overproduction of C4 photosynthetic enzymes in transgenic rice plants: an approach to introduce the C4-like photosynthetic pathway into rice. MDH, ME, PEPC
84  2008 Relationships between quantum yield for CO2 assimilation, activity of key enzymes and CO2 leakiness in Amaranthus cruentus, a C4 dicot, grown in high or low light. HL, LL, PEPC, PFDs
85  2008 The catalyzing role of PPDK in Giardia lamblia. PK
86  2008 The pyruvate, orthophosphate dikinase regulatory proteins of Arabidopsis possess a novel, unprecedented Ser/Thr protein kinase primary structure. PK, PP, RP
87  2008 The Wolbachia endosymbiont of Brugia malayi has an active pyruvate phosphate dikinase. PEP, PK, wBm
88  2008 [Expression of PPDK from Microbispora rosea subsp. aerata in Escherichia coli and its application in pyrosequencing]. PEP
89  2007 Comparison of the biological properties of several marine sponge-derived sesquiterpenoid quinones. PLA2
90  2007 Screening marine fungi for inhibitors of the C4 plant enzyme pyruvate phosphate dikinase: unguinol as a potential novel herbicide candidate. ---
91  2007 Swiveling domain mechanism in pyruvate phosphate dikinase. PEP
92  2006 Cloning and expression of maize-leaf pyruvate, Pi dikinase regulatory protein gene. RP
93  2006 Enzyme system for improving the detection limit in pyrosequencing. ---
94  2006 Examination of the structure, stability, and catalytic potential in the engineered phosphoryl carrier domain of pyruvate phosphate dikinase. PEP
95  2006 Phosphoenolpyruvate synthetase and pyruvate, phosphate dikinase of Thermoproteus tenax: key pieces in the puzzle of archaeal carbohydrate metabolism. EMP, PEPS, PK
96  2006 Posttranslational regulation of pyruvate, orthophosphate dikinase in developing rice (Oryza sativa) seeds. ---
97  2006 Pyruvate-phosphate dikinase of oxymonads and parabasalia and the evolution of pyrophosphate-dependent glycolysis in anaerobic eukaryotes. PFK
98  2006 The Arabidopsis PPDK gene is transcribed from two promoters to produce differentially expressed transcripts responsible for cytosolic and plastidic proteins. ---
99  2005 A rapid screening method to detect specific inhibitors of pyruvate orthophosphate dikinase as leads for C4 plant-selective herbicides. ---
100  2005 Crystal structure of the phosphoenolpyruvate-binding enzyme I-domain from the Thermoanaerobacter tengcongensis PEP: sugar phosphotransferase system (PTS). EI, PEP, PTS