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■ Abbreviation / Long Form : PPI / protein-protein interaction

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Abbreviation:   PPI  (>> Co-occurring Abbreviation)
Long Form:   protein-protein interaction
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No. Year Title Co-occurring Abbreviation
2021 Studying RNA-Protein Interaction Using Riboproteomics. CMV, LncRNA, satRNA
2020 4beta-Hydroxywithanolide E from Goldenberry (Whole Fruits of Physalis peruviana L.) as a Promising Agent against Chronic Obstructive Pulmonary Disease. 4betaHWE, CS, Nrf2
2020 A 7-methoxybicoumarin derivative selectively inhibits BRD4 BD2 for anti-melanoma therapy. BRD4
2020 A Begomovirus Nuclear Shuttle Protein-Interacting Immune Hub: Hijacking Host Transport Activities and Suppressing Incompatible Functions. MP, NIK1, NSP
2020 A cell-penetrant lactam-stapled peptide for targeting eIF4E protein-protein interactions. eIF4E
2020 A comprehensive analysis on the effects of 1,25(OH)2D3 on primary chondrocytes cultured from patients with osteoarthritis. BP, CCK-8, DEGs, GO, OA
2020 A comprehensive review and evaluation of computational methods for identifying protein complexes from protein-protein interaction networks. ---
2020 A data-driven hypothesis on the epigenetic dysregulation of host metabolism by SARS coronaviral infection: Potential implications for the SARS-CoV-2 modus operandi. GSEA
2020 A deep learning framework for gene ontology annotations with sequence - and network-based information. Bi-LSTM, multi-scale CNN
10  2020 A Fluorescence Anisotropy-Based Comprehensive Method for the In Vitro Screening of COI1-JAZs Agonists and Antagonists. COI1, JAZ
11  2020 A large accessory protein interactome is rewired across environments. ---
12  2020 A large-scale transcriptome analysis identified ELANE and PRTN3 as novel methylation prognostic signatures for clear cell renal cell carcinoma. ccRCCs, OS
13  2020 A Mechanism Underlying Sex-Associated Differences in Ankylosing Spondylitis: Troponin C2, Fast Skeletal Type (TNNC2) and Calcium Signaling Pathway. AS, EDGs, TNNC2, TNNC2
14  2020 A method for estimating coherence of molecular mechanisms in major human disease and traits. ---
15  2020 A microRNA-Messenger RNA Regulatory Network and Its Prognostic Value in Cervical Cancer. CC, DEmiRNAs, EZH2, FLT1, GAPDH, miRNA
16  2020 A Missense Mutation in IRS1 is Associated with the Development of Early-Onset Type 2 Diabetes. MODY, WES
17  2020 A Multi-Omics Analysis of Bone Morphogenetic Protein 5 (BMP5) mRNA Expression and Clinical Prognostic Outcomes in Different Cancers Using Bioinformatics Approaches. BMP5
18  2020 A Network Pharmacology Analysis of the Active Components of the Traditional Chinese Medicine Zuojinwan in Patients with Gastric Cancer. GO, KEGG, ZJW
19  2020 A Network Pharmacology Approach to Explore the Potential Mechanisms of Huangqin-Baishao Herb Pair in Treatment of Cancer. KEGG, SysDT, TCMSP
20  2020 A Network Pharmacology Approach to Investigate the Active Compounds and Mechanisms of Musk for Ischemic Stroke. DAVID, GO, IS, KEGG
21  2020 A network pharmacology approach to investigate the mechanism of Shuxuening injection in the treatment of ischemic stroke. ADME, BATMAN-TCM, C-T-P, DAVID, GBE, GO, HE, IS, KEGG, OMIM, RMSD, SXNI, TCMID, TCMSP, TTC, TTD
22  2020 A network pharmacology study on analgesic mechanism of Yuanhu-Baizhi herb pair. GO, KEGG, MCC, YB
23  2020 A network pharmacology study on the Tripteryguim wilfordii Hook for treatment of Crohn's disease. CD, GO, KEGG, TCMSP, TWH
24  2020 A network pharmacology-based approach to explore the effects of Chaihu Shugan powder on a non-alcoholic fatty liver rat model through nuclear receptors. CSP, GO, HPLC-MS, MCODE, NAFLD, NRs, TCM
25  2020 A Network-Based Approach to Explore the Mechanism and Bioactive Compounds of Erzhi Pill against Metabolic Dysfunction-Associated Fatty Liver Disease. EZP, MAFLD, NAFLD
26  2020 A Network-Based Approach to Explore the Mechanisms of Uncaria Alkaloids in Treating Hypertension and Alleviating Alzheimer's Disease. TCM
27  2020 A network-based pharmacology study of active compounds and targets of Fritillaria thunbergii against influenza. C-D, C-D-P, C-T, FT
28  2020 A New Prognostic Risk Model Based on PPAR Pathway-Related Genes in Kidney Renal Clear Cell Carcinoma. GSEA, KIRC, PPAR, STRING
29  2020 A novel ceRNA axis involves in regulating immune infiltrates and macrophage polarization in gastric cancer. DEGs, GC, TAMs
30  2020 A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes. LFSUF
31  2020 A novel method to predict essential proteins based on tensor and HITS algorithm. HITS
32  2020 A Novel Network Pharmacology Strategy to Decode Mechanism of Lang Chuang Wan in Treating Systemic Lupus Erythematosus. CI, KGEC, LCW, SLE, TCM
33  2020 A novel risk score system of immune genes associated with prognosis in endometrial cancer. AUC, DEGs, FUSCC, ROC
34  2020 A Novel Three-miRNA Signature Identified Using Bioinformatics Predicts Survival in Esophageal Carcinoma. DEMs, ESCA, FOXO, GEO, mTOR, STRING, VEGF
35  2020 A Prognostic Model Based on Six Metabolism-Related Genes in Colorectal Cancer. CRC, GSEA, KEGG, MRGs, MSigDB, TFs
36  2020 A protein tertiary structure mimetic modulator of the Hippo signalling pathway. ---
37  2020 A signature predicting relapse based on integrated analysis on relapse-associated alternative mRNA splicing in I-III rectal cancer. AS
38  2020 A Supramolecular Stabilizer of the 14-3-3zeta/ERalpha Protein-Protein Interaction with a Synergistic Mode of Action. ERalpha
39  2020 A systematic analysis of natural alpha-glucosidase inhibitors from flavonoids of Radix scutellariae using ultrafiltration UPLC-TripleTOF-MS/MS and network pharmacology. CTP, RS, T2D
40  2020 A systems genetics approach to revealing the Pdgfb molecular network of the retina. IOP, MAPK, PDGF, PDGFB, RI, TF, VEGF
41  2020 A Systems Pharmacology Approach for Identifying the Multiple Mechanisms of Action for the Rougui-Fuzi Herb Pair in the Treatment of Cardiocerebral Vascular Diseases. C-T-D, CCVDs, GO, KEGG, T-P, TCMSP
42  2020 A Systems View of the Genome Guardians: Mapping the Signaling Circuitry Underlying Oligonucleotide/Oligosaccharide-Binding Fold Proteins. OB
43  2020 ABCC9, NKAPL, and TMEM132C are potential diagnostic and prognostic markers in triple-negative breast cancer. TNBC
44  2020 Active constituents and mechanisms of Respiratory Detox Shot, a traditional Chinese medicine prescription, for COVID-19 control and prevention: Network-molecular docking-LC-MSE analysis. 3CLpro, COVID-19, RDS, TCM
45  2020 Aerobic Exercises Induce Antioxidant Pathways Activation in Rats. GO
46  2020 An Effective Graph Clustering Method to Identify Cancer Driver Modules. CCF
47  2020 An Efficient Algorithm for Identifying Mutated Subnetworks Associated with Survival in Cancer. SAMS
48  2020 An immune-related gene signature for determining Ewing sarcoma prognosis based on machine learning. DEIRGs, ES, IRGs
49  2020 An integrated in silico approach to understand protein-protein interactions: human meprin-beta with fetuin-A. ---
50  2020 An integrated method for identifying essential proteins from multiplex network model of protein-protein interactions. MEC
51  2020 An Integrated Network Analysis of mRNA and Gene Expression Profiles in Parkinson's Disease. DEGs, GEO, KEGG, MAPK, PD
52  2020 An integrative, genomic, transcriptomic and network-assisted study to identify genes associated with human cleft lip with or without cleft palate. CL/P, GWAS
53  2020 Analysis and identification of novel biomarkers involved in neuroblastoma via integrated bioinformatics. DEGs, GEO, GO, KEGG, NB
54  2020 Analysis of candidate biomarkers and related transcription factors involved in the development and restoration of stress-induced gastric ulcer by transcriptomics. DEGs, GO, TFs
55  2020 Analysis of Circular RNA-Related Competing Endogenous RNA Identifies the Immune-Related Risk Signature for Colorectal Cancer. CAMs, ceRNA, circRNAs, CRC, KEGG, OS
56  2020 Analysis of Differential Expression Proteins of Paclitaxel-Treated Lung Adenocarcinoma Cell A549 Using Tandem Mass Tag-Based Quantitative Proteomics. DEPs, GO
57  2020 Analysis of Gene Expression in Bladder Cancer: Possible Involvement of Mitosis and Complement and Coagulation Cascades Signaling Pathway. BC, DEGs, miRNAs, TFs
58  2020 Analysis of gene expression profiles at different stages during preadipocyte differentiation in rabbits. DEGs, GO, KEGG
59  2020 Analysis of genes associated with prognosis of lung adenocarcinoma based on GEO and TCGA databases. DEGs, GEO, LUAD
60  2020 Analysis of key genes and pathways associated with the pathogenesis of intervertebral disc degeneration. DEGs, IDD
61  2020 Analysis of key genes and pathways in breast ductal carcinoma in situ. BC, DCIS, DEGs, FABP4, LEP, LPL, PPARG
62  2020 Analysis of relapse-associated alternative mRNA splicing and construction of a prognostic signature predicting relapse in I-III colon cancer. AS, SF
63  2020 Analysis of the molecular mechanism of Pudilan (PDL) treatment for COVID-19 by network pharmacology tools. ACE2, CRP, EGFR, GO, IFN-gamma, IL-10, IL-6, PDL, TGF-beta1, TNF
64  2020 Analyzing Functional Pathways and constructing gene-gene network for Narcolepsy based on candidate genes. ---
65  2020 Aneuploid IMR90 cells induced by depletion of pRB, DNMT1 and MAD2 show a common gene expression signature. GSEA
66  2020 Animal model and bioinformatics analyses suggest the TIMP1/MMP9 axis as a potential biomarker in oral squamous cell carcinoma. DEGs, GEPIA, GO, MMPs, OSCC
67  2020 Anti-apoptosis mechanism of triptolide based on network pharmacology in focal segmental glomerulosclerosis rats. FSGS, GO, KEGG, TCMSP, TPL
68  2020 Anti-Inflammatory Activity of Sanjie Zhentong Capsule Assessed By Network Pharmacology Analysis of Adenomyosis Treatment. AM, CTPG, GO, IL-10, IL-6, KEGG, NO, SZC
69  2020 Anti-Respiratory Syncytial Virus Mechanism of Houttuynia cordata Thunb Exploration based on Network Pharmacology. GEO, RSV, TCM, TCMSP
70  2020 Artificial Fish Swarm Optimization Based Method to Identify Essential Proteins. GO
71  2020 Assessing ACE2 expression patterns in lung tissues in the pathogenesis of COVID-19. ---
72  2020 Assessment of risk conferred by coding and regulatory variations of TMPRSS2 and CD26 in susceptibility to SARS-CoV-2 infection in human. COVID-19, LD, TMPRSS2
73  2020 Assessment of the genes and molecular mechanisms of B cells activation through systems biology approaches. DE, GO
74  2020 Assessment of the Microbiome Role in Skin Protection Against UV Irradiation Via Network Analysis. DEGs, GF, SPF
75  2020 Association between circulating follistatin-like-1 and metabolic syndrome in middle-aged and old population: A cross-sectional study. FPG, FSTL1, IR, MetS, VAI, WC
76  2020 Association Between FoxO1, A2M, and TGF-beta1, Environmental Factors, and Major Depressive Disorder. A2M, FOX, GE, GG, GGE, GRS, MDD, TGF
77  2020 Association between oxidative-stress-related markers and calcified femoral artery in type 2 diabetes patients. SOD2, T2D
78  2020 Association between SNAP25 and human glioblastoma multiform: a comprehensive bioinformatic analysis. DEGs, GBM, GEO, STRING
79  2020 Astragaloside IV acts through multi-scale mechanisms to effectively reduce diabetic nephropathy. AS-IV, DN, EMT, GO, TCM
80  2020 ATP6V1G3 Acts as a Key Gene in Recurrent Spontaneous Abortion: An Integrated Bioinformatics Analysis. DEGs, GO, KEEG
81  2020 Automated Extraction and Visualization of Protein-Protein Interaction Networks and Beyond: A Text-Mining Protocol. ---
82  2020 Bioinformatic Analysis Identifies Potential Key Genes in the Pathogenesis of Turner Syndrome. DEGs, GEO, TS
83  2020 Bioinformatic Analysis of Neuroimmune Mechanism of Neuropathic Pain. DEGs, GO, NP
84  2020 Bioinformatic analysis of proteomic data for iron, inflammation, and hypoxic pathways in restless legs syndrome. DEPs, RLS
85  2020 Bioinformatic analysis revealing mitotic spindle assembly regulated NDC80 and MAD2L1 as prognostic biomarkers in non-small cell lung cancer development. GDEs, GEO, LUAD, NSCLC
86  2020 Bioinformatic analysis reveals hub genes and pathways that promote melanoma metastasis. DEG, GEO
87  2020 Bioinformatic analysis reveals that the OAS family may play an important role in lupus nephritis. GO, KEGG, LN
88  2020 Bioinformatic analysis reveals the importance of epithelial-mesenchymal transition in the development of endometriosis. DEGs, EMT, GEO, GO, IHC
89  2020 Bioinformatic Analysis Suggests That Three Hub Genes May Be a Vital Prognostic Biomarker in Pancreatic Ductal Adenocarcinoma. DEGs, KEGG, PDAC, WGCNA
90  2020 Bioinformatic gene analysis for potential therapeutic targets of Huntington's disease in pre-symptomatic and symptomatic stage. DEGs, GEO, GO, HD, KEGG, pre-HD
91  2020 Bioinformatic screening and identification of downregulated hub genes in adrenocortical carcinoma. ACC, CNN1, CSRP1, DEGs, FBLN1, FBLN5, MFAP4, MYH11, MYLK
92  2020 Bioinformatics analysis and experimental validation of TTK as a biomarker for prognosis in non-small cell lung cancer. DEGs, NSCLC
93  2020 Bioinformatics analysis and identification of potential genes related to pathogenesis of cervical intraepithelial neoplasia. CC, CIN, DEGs, GSEA, KEGG, MF, WGCNA
94  2020 Bioinformatics analysis and verification of molecular targets in ovarian cancer stem-like cells. CSCs, CSLCs, DEGs, EOC, GEO, GO, KEGG
95  2020 Bioinformatics Analysis for Multiple Gene Expression Profiles in Sepsis. DEGs
96  2020 Bioinformatics Analysis Identifies Hub Genes and Molecular Pathways Involved in Sepsis-Induced Myopathy. DEGs, GEO, GO, HMOX1, IL-17, KEGG, MCODE, MT, NQO1, SIM
97  2020 Bioinformatics analysis of candidate genes for milk production traits in water buffalo (Bubalus bubalis). GO, KEGG
98  2020 Bioinformatics analysis of different candidate genes involved in hepatocellular carcinoma induced by HepG2 cells or tumor cells of patients. DEGs, HCC
99  2020 Bioinformatics analysis of differentially expressed genes in subchondral bone in early experimental osteoarthritis using microarray data. DAVID, DEGs, GEO, GO, KEGG, OA
100  2020 Bioinformatics analysis of gene expression profiles of Inclusion body myositis. DEGs, GEO, IBM