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■ Abbreviation / Long Form : Psi / pseudouridine

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Total Number of Papers: 176
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Abbreviation:   Psi  (>> Co-occurring Abbreviation)
Long Form:   pseudouridine
 Abbreviation Variation
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No. Year Title Co-occurring Abbreviation
2019 Decoding the Atlas of RNA Modifications from Epitranscriptome Sequencing Data. 2'-O-Me, m5C, m6A, ncRNAs, SNPs
2019 Detection and Quantification of Pseudouridine in RNA. ---
2019 Impact of intron removal from tRNA genes on Saccharomyces cerevisiae. ---
2019 Post-transcriptional pseudouridylation in mRNA as well as in some major types of noncoding RNAs. ---
2019 The human ortholog of archaeal Pus10 produces pseudouridine 54 in select tRNAs where its recognition sequence contains a modified residue. ---
2018 Emerging role of dynamic RNA modifications during animal development. m1A, m5C, m6A
2018 Evolution of Eukaryal and Archaeal Pseudouridine Synthase Pus10. ---
2018 Nucleotide Modifications Decrease Innate Immune Response Induced by Synthetic Analogs of snRNAs and snoRNAs. shRNA, snoRNAs, snRNAs
2018 Pseudouridine-Free Escherichia coli Ribosomes. PUS, rRNAs
10  2018 Pseudouridines have context-dependent mutation and stop rates in high-throughput sequencing. ---
11  2018 PseUI: Pseudouridine sites identification based on RNA sequence information. DC, NC, PSDP, PseDNC, PSNP, SVM
12  2018 RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data. 2'-O-Me, m1A, m5C, m6A, PWMs, RBPs, SNPs
13  2018 Stress-induced Pseudouridylation Alters the Structural Equilibrium of Yeast U2 snRNA Stem II. snRNA
14  2017 A Radiolabeling-Free, qPCR-Based Method for Locus-Specific Pseudouridine Detection. RT
15  2017 Chemical Modifications to RNA: A New Layer of Gene Expression Regulation. hm5C, m1A, m5C, m6A
16  2017 Combined tRNA modification defects impair protein homeostasis and synthesis of the yeast prion protein Rnq1. ---
17  2017 Epitranscriptomic regulation of viral replication. 5mC, m6A
18  2017 Helix 69 of Escherichia coli 23S ribosomal RNA as a peptide nucleic acid target. PNA
19  2017 mRNA pseudouridylation affects RNA metabolism in the parasite Toxoplasma gondii. ---
20  2017 Posttranscriptional RNA Pseudouridylation. PUSs
21  2017 Pseudouridine Modification Inhibits Muscleblind-like 1 (MBNL1) Binding to CCUG Repeats and Minimally Structured RNA through Reduced RNA Flexibility. CNBP, MBNL1
22  2017 Quantification of Pseudouridine Levels in Cellular RNA Pools with a Modified HPLC-UV Assay. HPLC-UV
23  2017 Tailor-Made Molecularly Imprinted Polymer for Selective Recognition of the Urinary Tumor Marker Pseudouridine. CRC, Psi-MIP
24  2017 The Dark Side of the Epitranscriptome: Chemical Modifications in Long Non-Coding RNAs. lncRNAs
25  2017 Translating the epitranscriptome. mRNA, rRNA, tRNA
26  2017 TRUB1 is the predominant pseudouridine synthase acting on mammalian mRNA via a predictable and conserved code. ---
27  2016 A pseudouridylation switch in rRNA is implicated in ribosome function during the life cycle of Trypanosoma brucei. BSF, LSU, PCF, snoRNA
28  2016 Deciphering the epitranscriptome: A green perspective. ---
29  2016 Effects of Chemically Modified Messenger RNA on Protein Expression. 5moU, EGFP, Fluc
30  2016 Messenger RNA modifications: Form, distribution, and function. ---
31  2016 mRNA modifications: Dynamic regulators of gene expression? ---
32  2016 Nucleic Acid Modifications in Regulation of Gene Expression. 5mC, 6mA
33  2016 Nucleotide modifications within bacterial messenger RNAs regulate their translation and are able to rewire the genetic code. ---
34  2016 Post-transcriptional modifications in development and stem cells. m5C, m6A
35  2016 Pseudouridine synthase 1 deficient mice, a model for Mitochondrial Myopathy with Sideroblastic Anemia, exhibit muscle morphology and physiology alterations. MHC, MLASA, SDH, TA
36  2016 Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly. BSRR
37  2016 Pseudouridylation meets next-generation sequencing. ---
38  2016 RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data. 2'-O-Me
39  2016 Structure-function relationships of archaeal Cbf5 during in vivo RNA-guided pseudouridylation. ---
40  2016 The Pseudouridine Synthases Proceed through a Glycal Intermediate. ---
41  2016 The TOR signaling pathway regulates starvation-induced pseudouridylation of yeast U2 snRNA. ---
42  2015 Chemical pulldown reveals dynamic pseudouridylation of the mammalian transcriptome. CeU-Seq
43  2015 Contribution of two conserved histidines to the dual activity of archaeal RNA guide-dependent and -independent pseudouridine synthase Cbf5. PUS, RNP
44  2015 Functional importance of Psi38 and Psi39 in distinct tRNAs, amplified for tRNAGln(UUG) by unexpected temperature sensitivity of the s2U modification in yeast. ---
45  2015 Human ribosomes from cells with reduced dyskerin levels are intrinsically altered in translation. IRES, X-DC
46  2015 N(1)-methylpseudouridine-incorporated mRNA outperforms pseudouridine-incorporated mRNA by providing enhanced protein expression and reduced immunogenicity in mammalian cell lines and mice. m1Psi, m5C, TLR3
47  2015 PPUS: a web server to predict PUS-specific pseudouridine sites. PUS
48  2015 Probing RNA Modification Status at Single-Nucleotide Resolution in Total RNA. Nm
49  2015 Pseudo-Seq: Genome-Wide Detection of Pseudouridine Modifications in RNA. ---
50  2015 Pseudouridine Chemical Labeling and Profiling. ---
51  2015 Pseudouridine in a new era of RNA modifications. ---
52  2015 Pseudouridine in mRNA: Incorporation, Detection, and Recoding. ---
53  2015 RNA size is a critical factor for U-containing substrate selectivity and permanent pseudouridylated product release during the RNA:Psi-synthase reaction catalyzed by box H/ACA sRNP enzyme at high temperature. ---
54  2015 Transcriptome-Wide Identification of Pseudouridine Modifications Using Pseudo-seq. ---
55  2014 Dye label interference with RNA modification reveals 5-fluorouridine as non-covalent inhibitor. 5-FU
56  2014 Hsp20, a small heat shock protein of Deinococcus radiodurans, confers tolerance to hydrogen peroxide in Escherichia coli. EC-pHsp20
57  2014 Modifications to toxic CUG RNAs induce structural stability, rescue mis-splicing in a myotonic dystrophy cell model and reduce toxicity in a myotonic dystrophy zebrafish model. DMPK
58  2014 Pseudouridine: still mysterious, but never a fake (uridine)! ---
59  2014 Structure modulation of helix 69 from Escherichia coli 23S ribosomal RNA by pseudouridylations. ---
60  2014 The contribution of pseudouridine to stabilities and structure of RNAs. ---
61  2014 The mechanism of pseudouridine synthases from a covalent complex with RNA, and alternate specificity for U2605 versus U2604 between close homologs. 5-FU
62  2013 Geometric effect on the photocrosslinking reaction between 3-cyanovinylcarbazole nucleoside and pyrimidine base in DNA/RNA heteroduplex. ---
63  2013 In human pseudouridine synthase 1 (hPus1), a C-terminal helical insert blocks tRNA from binding in the same orientation as in the Pus1 bacterial homologue TruA, consistent with their different target selectivities. hPus1
64  2013 Purification, crystallization and preliminary X-ray crystallographic study of the tRNA pseudouridine synthase TruB from Streptococcus pneumoniae. ---
65  2013 Role of forefinger and thumb loops in production of Psi54 and Psi55 in tRNAs by archaeal Pus10. ---
66  2013 Thermodynamic contribution and nearest-neighbor parameters of pseudouridine-adenosine base pairs in oligoribonucleotides. ---
67  2013 Unusual base pairing during the decoding of a stop codon by the ribosome. Ser, tRNA
68  2012 Comparison of solution conformations and stabilities of modified helix 69 rRNA analogs from bacteria and human. rRNA
69  2012 Different sensitivity of H69 modification enzymes RluD and RlmH to mutations in Escherichia coli 23S rRNA. ---
70  2012 Impact of base pair identity 5' to the spliceosomal branch site adenosine on branch site conformation. 2AP
71  2012 Pseudouridine monophosphate glycosidase: a new glycosidase mechanism. PsiMP
72  2012 Pseudouridine synthase 1: a site-specific synthase without strict sequence recognition requirements. ASL, Ser, Ser, Ser
73  2012 Rationalization and prediction of selective decoding of pseudouridine-modified nonsense and sense codons. ---
74  2012 The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA. ---
75  2011 Cellular dynamics of RNA modification. mRNAs, tRNA
76  2011 Converting nonsense codons into sense codons by targeted pseudouridylation. ---
77  2011 Identification, localization, and relative quantitation of pseudouridine in RNA by tandem mass spectrometry of hydrolysis products. ---
78  2011 Inactivation of the RluD pseudouridine synthase has minimal effects on growth and ribosome function in wild-type Escherichia coli and Salmonella enterica. RF2
79  2011 Mass spectrometry-based quantification of pseudouridine in RNA. CMCT, MS, SRM
80  2011 Pseudouridine formation in archaeal RNAs: The case of Haloferax volcanii. ---
81  2011 Pseudouridylation of 23S rRNA helix 69 promotes peptide release by release factor RF2 but not by release factor RF1. rRNA
82  2011 Spatially controlled expression of the Drosophila pseudouridine synthase RluA-1. md
83  2009 Enzymatic characterization and mutational studies of TruD--the fifth family of pseudouridine synthases. PsiS
84  2009 Preparation of short interfering RNA containing the modified nucleosides 2-thiouridine, pseudouridine, or dihydrouridine. ---
85  2009 Trypanosoma brucei spliced leader RNA maturation by the cap 1 2'-O-ribose methyltransferase and SLA1 H/ACA snoRNA pseudouridine synthase complex. SL, snoRNP
86  2008 Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA. ---
87  2008 Mutations in SUPPRESSOR OF VARIEGATION1, a factor required for normal chloroplast translation, suppress var2-mediated leaf variegation in Arabidopsis. SVR1, var2
88  2008 Noninvasive markers of oxidative DNA stress, RNA degradation and protein degradation are differentially correlated with resting metabolic rate and energy intake in children and adolescents. 8-oxodG, Gla
89  2008 Nop10 is a conserved H/ACA snoRNP molecular adaptor. snoRNPs
90  2008 Partial activity is seen with many substitutions of highly conserved active site residues in human Pseudouridine synthase 1. hPus1p
91  2008 Ribosome performance is enhanced by a rich cluster of pseudouridines in the A-site finger region of the large subunit. ASF
92  2008 YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA. ---
93  2007 Crystal structure of human Pus10, a novel pseudouridine synthase. ---
94  2007 Differential roles of archaeal box H/ACA proteins in guide RNA-dependent and independent pseudouridine formation. RNP
95  2007 Effect of base modifications on structure, thermodynamic stability, and gene silencing activity of short interfering RNA. Tm
96  2007 Identification of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Psi55-synthase and RNA-guided RNA:Psi-synthase activities. ---
97  2007 Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine. m6A
98  2007 Identifying effects of snoRNA-guided modifications on the synthesis and function of the yeast ribosome. Nm, snoRNAs
99  2006 Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5-aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity. ---
100  2006 Domain organization and crystal structure of the catalytic domain of E.coli RluF, a pseudouridine synthase that acts on 23S rRNA. ---