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■ Abbreviation / Long Form : RNA / RNA-Seq

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Total Number of Papers: 46
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Abbreviation:   RNA  (>> Co-occurring Abbreviation)
Long Form:   RNA-Seq
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No. Year Title Co-occurring Abbreviation
2020 Interactive Alternative Splicing Analysis of Human Stem Cells Using psichomics. AS
2020 Quantile regression for challenging cases of eQTL mapping. eQTLs, INT
2020 RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition. ---
2019 Events of alternative splicing in head and neck cancer via RNA sequencing - an update. AS, HNC, mRNAs
2019 PAT-Seq: A Method for Simultaneous Quantitation of Gene Expression, Poly(A)-Site Selection and Poly(A)-Length Distribution in Yeast Transcriptomes. APA, NGS
2019 RAP-8 ameliorates liver fibrosis by modulating cell cycle and oxidative stress. ---
2019 Ryuto: network-flow based transcriptome reconstruction. ---
2019 Transcriptome profiling of mouse samples using nanopore sequencing of cDNA and RNA molecules. ---
2018 Dietary fat and fiber interact to uniquely modify global histone post-translational epigenetic programming in a rat colon cancer progression model. DE, n-3 PUFA, SCFA
10  2018 The Inner Ear Heat Shock Transcriptional Signature Identifies Compounds That Protect Against Aminoglycoside Ototoxicity. HSPs, LINCS
11  2018 Transcriptome analysis of dorsal root ganglia's diabetic neuropathy reveals mechanisms involved in pain and regeneration. DN, DRG
12  2018 Viral sequences in human cancer. HPV
13  2017 Computational Methods and Correlation of Exon-skipping Events with Splicing, Transcription, and Epigenetic Factors. GESS, TFs
14  2017 Effects of Arginine on Streptococcus mutans Growth, Virulence Gene Expression, and Stress Tolerance. ADS
15  2017 Going global: the new era of mapping modifications in RNA. ---
16  2017 Integrative analyses of transcriptome sequencing identify novel functional lncRNAs in esophageal squamous cell carcinoma. EP300, ESCC, lncRNAs
17  2017 Removing bias against short sequences enables northern blotting to better complement RNA-seq for the study of small RNAs. miRNAs
18  2017 RNA-Seq-Based Comparative Transcriptomics: RNA Preparation and Bioinformatics. ---
19  2017 Transcriptional Categorization of the Etiology of Pneumonia Syndrome in Pediatric Patients in Malaria-Endemic Areas. ---
20  2016 Atp2c2 Is Transcribed From a Unique Transcriptional Start Site in Mouse Pancreatic Acinar Cells. ---
21  2016 SplAdder: identification, quantification and testing of alternative splicing events from RNA-Seq data. AS
22  2016 Transcriptome Analysis of the Intracellular Facultative Pathogen Piscirickettsia salmonis: Expression of Putative Groups of Genes Associated with Virulence and Iron Metabolism. NGS
23  2015 Discovering New Biology through Sequencing of RNA. ---
24  2015 Evaluation of Unbiased Next-Generation Sequencing of RNA (RNA-seq) as a Diagnostic Method in Influenza Virus-Positive Respiratory Samples. BAL, UMERS
25  2015 Gene fusion detection in formalin-fixed paraffin-embedded benign fibrous histiocytomas using fluorescence in situ hybridization and RNA sequencing. FFPE, FH
26  2015 Hierarchical Modeling and Differential Expression Analysis for RNA-seq Experiments with Inbred and Hybrid Genotypes. ---
27  2015 Next generation sequencing analysis reveals that the ribonucleases RNase II, RNase R and PNPase affect bacterial motility and biofilm formation in E. coli. ---
28  2015 NGS meta data analysis for identification of SNP and INDEL patterns in human airway transcriptome: A preliminary indicator for lung cancer. ---
29  2015 OncoRep: an n-of-1 reporting tool to support genome-guided treatment for breast cancer patients using RNA-sequencing. ---
30  2015 Quantification of co-transcriptional splicing from RNA-Seq data. ---
31  2015 Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads. WGS
32  2015 The role of TP53 in miRNA loading onto AGO2 and in remodelling the miRNA-mRNA interaction network. let-7, miRNA, TP53
33  2015 Transcriptome responses to Ralstonia solanacearum infection in the roots of the wild potato Solanum commersonii. ---
34  2014 Accurate mapping of cleavage and polyadenylation sites by 3' region extraction and deep sequencing. 3'READS, APA, pA
35  2014 High-throughput analysis of ovarian granulosa cell transcriptome. NGS
36  2014 Methods to study splicing from high-throughput RNA sequencing data. HTS
37  2014 SnowyOwl: accurate prediction of fungal genes by using RNA-Seq and homology information to select among ab initio models. HMM
38  2013 Detection of phase-dependent transcriptomic changes and Rubisco-mediated CO2 fixation into poly (3-hydroxybutyrate) under heterotrophic condition in Ralstonia eutropha H16 based on RNA-seq and gene deletion analyses. CBB, PHAs
39  2012 RNA-seq analysis of small RNPs in Trypanosoma brucei reveals a rich repertoire of non-coding RNAs. ncRNAs, RNPs, snoRNAs
40  2011 Non-invasive aneuploidy detection using free fetal DNA and RNA in maternal plasma: recent progress and future possibilities. cff DNA, DNA, MLPA
41  2011 NSMAP: a method for spliced isoforms identification and quantification from RNA-Seq. MDS, NSMAP
42  2011 RNA-Seq of the xylose-fermenting yeast Scheffersomyces stipitis cultivated in glucose or xylose. ---
43  2011 Statistical Modeling of RNA-Seq Data. ---
44  2011 Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. ncRNAs, PCATs, PRC2
45  2010 SNP discovery in the bovine milk transcriptome using RNA-Seq technology. ---
46  2010 Structural annotation of equine protein-coding genes determined by mRNA sequencing. ---