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â–  Abbreviation / Long Form : TEs / transposable elements

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Total Number of Papers: 1243
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Abbreviation:   TEs  (>> Co-occurring Abbreviation)
Long Form:   transposable elements
 Abbreviation Variation
 Long Form Variation
 Pair(Abbreviation/Long Form) Variation
No. Year Title Co-occurring Abbreviation
2019 A re-annotation of the Anopheles darlingi mobilome. ---
2019 A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster. ---
2019 Anaphase-promoting complex/cyclosome regulates RdDM activity by degrading DMS3 in Arabidopsis. APC/C, Pol V, RdDM
2019 Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs. lncRNA
2019 Bioinformatic analysis of regulation of natural antisense transcripts by transposable elements in human mRNA. NATs
2019 Characterization of the satellitome in lower vascular plants: the case of the endangered fern Vandenboschia speciosa. satDNA
2019 Comparative effect of allopolyploidy on transposable element composition and gene expression between Gossypium hirsutum and its two diploid progenitors. siRNAs
2019 Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure in Elaeis guineensis. LD, SLAF-seq, SNPs
2019 Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects. ---
10  2019 DNA methylome analysis provides evidence that the expansion of the tea genome is linked to TE bursts. ---
11  2019 Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes? ---
12  2019 Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains. ERVs
13  2019 Effects of assisted reproductive technologies on transposon regulation in the mouse pre-implanted embryo. ARTs
14  2019 Endo-siRNAs regulate early embryonic development by inhibiting transcription of long terminal repeat sequence in pig. dsRNA, endo-siRNA, ERVs, LTRs
15  2019 Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. TF
16  2019 Expansion of the fatty acyl reductase gene family shaped pheromone communication in Hymenoptera. FARs
17  2019 Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in Arabidopsis thaliana. MA, SNM
18  2019 Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells. ---
19  2019 Genome Size Evolution: Small Transposons with Large Consequences. ---
20  2019 Genome Size Reversely Correlates With Host Plant Range in Helicoverpa Species. ---
21  2019 Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization. HB, WGT, WOX
22  2019 Genome-wide variation in nucleotides and retrotransposons in alpine populations of Arabis alpina (Brassicaceae). SNPs
23  2019 Genomic Plasticity Mediated by Transposable Elements in the Plant Pathogenic Fungus Colletotrichum higginsianum. Ch
24  2019 Giant Transposons in Eukaryotes: Is Bigger Better? ---
25  2019 Global Methylomic and Transcriptomic Analyses Reveal the Broad Participation of DNA Methylation in Daily Gene Expression Regulation of Populus trichocarpa. DMRs
26  2019 Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot. HT
27  2019 Heterochromatin evolution in Arachis investigated through genome-wide analysis of repetitive DNA. satDNAs
28  2019 Heterogeneity of transposon expression and activation of the repressive network in human fetal germ cells. ---
29  2019 Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs. hESCs, KRAB
30  2019 Impact of polymorphic transposable elements on linkage disequilibrium along chromosomes. LD
31  2019 Impact of transposable elements in the architecture of genes of the human parasite Schistosoma mansoni. ---
32  2019 Investigation of Hanwoo-specific structural variations using whole-genome sequencing data. SVs
33  2019 Isolation and Characterization of Interspersed Repeated Sequences in the Common Lizard, Zootoca vivipara, and Their Conservation in Squamata. ---
34  2019 LINE-2 transposable elements are a source of functional human microRNAs and target sites. miRNAs
35  2019 LIONS: Analysis Suite for Detecting and Quantifying Transposable Element Initiated Transcription from RNA-seq. ---
36  2019 Long-read direct RNA sequencing by 5'-Cap capturing reveals the impact of Piwi on the widespread exonization of transposable elements in locusts. ---
37  2019 Maelstrom regulates spermatogenesis of the silkworm, Bombyx mori. MAEL
38  2019 Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements. SINEs
39  2019 Novel Insights into Plant Genome Evolution and Adaptation as Revealed through Transposable Elements and Non-Coding RNAs in Conifers. ---
40  2019 On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses. ---
41  2019 Patterns of transposable element variation and clinality in Drosophila. ---
42  2019 Population-specific dynamics and selection patterns of transposable element insertions in European natural populations. DrosEU
43  2019 Prevalence of plasmid-borne benzalkonium chloride resistance cassette bcrABC and cadmium resistance cadA genes in nonpathogenic Listeria spp. isolated from food and food-processing environments. BC
44  2019 Regulation of transposable elements by DNA modifications. 5mC
45  2019 RepetDB: a unified resource for transposable element references. ---
46  2019 RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena. IESs, ncRNA
47  2019 SQuIRE reveals locus-specific regulation of interspersed repeat expression. SQuIRE
48  2019 Targeted deletion of rice retrotransposon Tos17 via CRISPR/Cas9. LTR
49  2019 TE studies in Japan: the fourth Japanese meeting on host-transposon interactions. NIG
50  2019 The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host. HGTs, HGTs
51  2019 The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch. LTR, MY, MYA
52  2019 The impact of transposable element activity on therapeutically relevant human stem cells. CNVs
53  2019 The impact of transposable elements in adaptive evolution. ---
54  2019 The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.). FISH, LTR, REs
55  2019 The nucleolar transcriptome regulates Piwi shuttling between the nucleolus and the nucleoplasm. OSC, pol
56  2019 The RNA Helicase BELLE Is Involved in Circadian Rhythmicity and in Transposons Regulation in Drosophila melanogaster. ---
57  2019 The role of transposable elements in the evolution of aluminium resistance in plants. Al, OAs
58  2019 TIR-Learner, a New Ensemble Method for TIR Transposable Element Annotation, Provides Evidence for Abundant New Transposable Elements in the Maize Genome. hAT, TIRs
59  2019 Tracking the origin of two genetic components associated with transposable element bursts in domesticated rice. ---
60  2019 Transcriptome‑wide piRNA profiling in human gastric cancer. piRNAs
61  2019 Transposable elements are important contributors to standing variation in gene expression in Capsella grandiflora. SNPs
62  2019 Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells. ---
63  2019 Transposable elements contribute to fungal genes and impact fungal lifestyle. ---
64  2019 Transposable elements drive rapid phenotypic variation in Capsella rubella. FLC
65  2019 Transposable elements drive widespread expression of oncogenes in human cancers. ---
66  2019 Transposable elements significantly contributed to the core promoters in the human genome. ---
67  2019 Tumor suppressive activity of PIWI-interacting RNA in human fibrosarcoma mediated through repression of RRM2. PIWI
68  2019 Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions. CREs, ELRs
69  2018 A high throughput screen for active human transposable elements. ---
70  2018 A lncRNA-like Role for LINE1s in Development. ---
71  2018 A machine learning based framework to identify and classify long terminal repeat retrotransposons. LTRs
72  2018 A Maximum-Likelihood Approach to Estimating the Insertion Frequencies of Transposable Elements from Population Sequencing Data. ML, PE
73  2018 A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum. lncRNAs, ssRNA-seq
74  2018 A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea. ---
75  2018 Abundant recent activity of retrovirus-like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes. ---
76  2018 Accumulation of Transposable Elements in Autosomes and Giant Sex Chromosomes of Omophoita (Chrysomelidae: Alticinae). FISH
77  2018 An integrative piRNA analysis of mouse gametes and zygotes reveals new potential origins and gene regulatory roles. lncRNAs, piRNAs, sncRNAs
78  2018 An ultra-fast and scalable quantification pipeline for transposable elements from next generation sequencing data. ---
79  2018 Analysis of the Draft Genome of the Red Seaweed Gracilariopsis chorda Provides Insights into Genome Size Evolution in Rhodophyta. ---
80  2018 Arabidopsis RNA Polymerase V Mediates Enhanced Compaction and Silencing of Geminivirus and Transposon Chromatin during Host Recovery from Infection. FAIRE, Pol IV-RdDM, RdDM
81  2018 Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression. RDR6, SE
82  2018 Bombyx mori histone methyltransferase BmAsh2 is essential for silkworm piRNA-mediated sex determination. HMTs
83  2018 Can-SINE dynamics in the giant panda and three other Caniformia genomes. PPS
84  2018 Computational tools to unmask transposable elements. ---
85  2018 Constant conflict between Gypsy LTR retrotransposons and CHH methylation within a stress-adapted mangrove genome. LTR, siRNA
86  2018 Construction of genetic linkage map and identification of QTLs related to agronomic traits in maize using DNA transposon-based markers. Mu-TD, SCAR
87  2018 ConTEdb: a comprehensive database of transposable elements in conifers. ---
88  2018 Contribution of transposable elements in the plant's genome. ---
89  2018 Convergent adaptive evolution in marginal environments: unloading transposable elements as a common strategy among mangrove genomes. LTR-RT
90  2018 Development of CACTA transposon derived SCAR markers and their use in population structure analysis in Zea mays. PIC, SCAR
91  2018 Dispersion of transposable elements and multigene families: Microstructural variation in Characidium (Characiformes: Crenuchidae) genomes. Rex, U2 snRNA
92  2018 Distinguishing friends, foes, and freeloaders in giant genomes. ---
93  2018 Distribution patterns and variation analysis of simple sequence repeats in different genomic regions of bovid genomes. 3'UTRs, CV, GC, P-SSRs, RCN
94  2018 Double insertion of transposable elements provides a substrate for the evolution of satellite DNA. ---
95  2018 Epigenetic regulation of intragenic transposable elements: a two-edged sword. ---
96  2018 Evidence for positive selection on recent human transposable element insertions. ---
97  2018 Evolutionary dynamics of transposable elements during silkworm domestication. ML
98  2018 Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice. LTR, RTs
99  2018 Exaptation of transposable element coding sequences. ---
100  2018 Further analysis of barley MORC1 using a highly efficient RNA-guided Cas9 gene-editing system. KO, MORC, sgRNA, snRNA, SpCas9