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■ Abbreviation / Long Form : WGS / whole genome sequencing

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Total Number of Papers: 1763
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Abbreviation:   WGS  (>> Co-occurring Abbreviation)
Long Form:   whole genome sequencing
 Abbreviation Variation
 Long Form Variation
 Pair(Abbreviation/Long Form) Variation
No. Year Title Co-occurring Abbreviation
2019 A Compendium of Mutational Signatures of Environmental Agents. ---
2019 A Core Genome Multilocus Sequence Typing Scheme for Enterococcus faecalis. cgMLST, MLST
2019 A crash course in sequencing for a microbiologist. NGS
2019 A Diagnostic Algorithm To Investigate Pyrazinamide and Ethambutol Resistance in Rifampin-Resistant Mycobacterium tuberculosis Isolates in a Low-Incidence Setting. DST
2019 A Novel VanA-Carrying Plasmid in a Clinical Isolate of Enterococcus avium. ARGs
2019 A pilot precision medicine trial for children with diffuse intrinsic pontine glioma-PNOC003: A report from the Pacific Pediatric Neuro-Oncology Consortium. ctDNA, DIPG, H3K27M, RNA-Seq, WES
2019 A series of three cases of severe Clostridium difficile infection in Australia associated with a binary toxin producing clade 2 ribotype 251 strain. CDI, MLST, RT, SNV, tcdA
2019 A simple and accurate method to determine genomewide significance for association tests in sequencing studies. WES
2019 A Third Linear Association Between Olduvai (DUF1220) Copy Number and Severity of the Classic Symptoms of Inherited Autism. CDS, SDS
10  2019 A virome-wide clonal integration analysis platform for discovering cancer viral etiology. BKV, EBV, HBV, HPV
11  2019 Accuracy of imputation to whole-genome sequence in sheep. SNP
12  2019 Advanced Genetic Approaches in Discovery and Characterization of Genes Involved With Osteoporosis in Mouse and Human. GWAS, GWLA, PheWAS
13  2019 Advancing Personalized Medicine Through the Application of Whole Exome Sequencing and Big Data Analytics. AI, WES
14  2019 Air-conditioner cooling towers as complex reservoirs and continuous source of Legionella pneumophila infection evidenced by a genomic analysis study in 2017, Switzerland. ACCT, cgMLST
15  2019 ALPHLARD-NT: Bayesian Method for Human Leukocyte Antigen Genotyping and Mutation Calling through Simultaneous Analysis of Normal and Tumor Whole-Genome Sequence Data. HLA, WES
16  2019 ALSgeneScanner: a pipeline for the analysis and interpretation of DNA sequencing data of ALS patients. ---
17  2019 An economic analysis of salmonella detection in fresh produce, poultry, and eggs using whole genome sequencing technology in Canada. ---
18  2019 An outbreak of severe invasive meningococcal disease due to a capsular switched Neisseria meningitidis hypervirulent strain B:cc11. IMD
19  2019 An Outpatient Clinic as a Potential Site of Transmission for an Outbreak of New Delhi Metallo-beta-Lactamase-producing Klebsiella pneumoniae Sequence Type 716: A Study Using Whole-genome Sequencing. NDM
20  2019 An unusual case of Erysipelothrix rhusiopathiae prosthetic joint infection from the Canadian Arctic: whole genome sequencing unable to identify a zoonotic source. ---
21  2019 Analysis of mucosal melanoma whole-genome landscapes reveals clinically relevant genomic aberrations. MMs, PDX, SVs
22  2019 Analysis of the type II-A CRISPR-Cas system in Streptococcus canis isolated from diseased companion animals and one human patient in Japan. ---
23  2019 Apple whole genome sequences: recent advances and new prospects. ---
24  2019 Applications of genomics to slow the spread of multidrug-resistant Neisseria gonorrhoeae. ---
25  2019 Beyond medical actionability: Public perceptions of important actions in response to hypothetical genetic testing results. ---
26  2019 Beyond the SNP Threshold: Identifying Outbreak Clusters Using Inferred Transmissions. SNPs
27  2019 Biallelic loss of function variants in PPP1R21 cause a neurodevelopmental syndrome with impaired endocytic function. NGS
28  2019 Blood group genotyping. RhIG
29  2019 Carbapenem-resistant Pseudomonas aeruginosa carrying blaVIM-36 assigned to ST308: Indicated non-virulence in a Galleria mellonella model. MICs, MLST, PFGE, ST
30  2019 Carriage meningococcal isolates with capsule null locus dominate among high school students in a non-endemic period, Italy, 2012-2013. CCs, cgMLST, cnl, fHbp, IMD, NadA, NHBA
31  2019 Characterization of an NDM-19-producing Klebsiella pneumoniae strain harboring 2 resistance plasmids from China. CRKP, MGEs
32  2019 Characterization of carbapenemase-producing Klebsiella oxytoca in Spain, 2016-2017. ---
33  2019 Characterization of compensatory mutations associated with restoration of daptomycin-susceptibility in daptomycin non-susceptible methicillin-resistant Staphylococcus aureus and the role mprF mutations. CW, NS
34  2019 Characterization of Emetic and Diarrheal Bacillus cereus Strains From a 2016 Foodborne Outbreak Using Whole-Genome Sequencing: Addressing the Microbiological, Epidemiological, and Bioinformatic Challenges. SNPs
35  2019 Characterization of Plasmid-Mediated Quinolone Resistance in Gram-Negative Bacterial Strains from Animals and Humans in China. PMQR, PMQRs
36  2019 Children with cystic fibrosis are infected with multiple subpopulations of Mycobacterium abscessus with different antimicrobial resistance profiles. CF, SNVs
37  2019 Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii. MDR, RNA-Seq, TCS, TraDIS
38  2019 Clostridium difficile: Investigating Transmission Patterns Between Infected and Colonized Patients Using Whole Genome Sequencing. CDI
39  2019 Co-circulation of multidrug-resistant Shigella among men who have sex with men, Australia. MDU PHL, MSM
40  2019 Comparative analysis of whole-genome sequencing pipelines to minimize false negative findings. VCAs
41  2019 Comparison of the Whole-Genome Sequence of an Oka Varicella Vaccine from China with Other Oka Vaccine Strains Reveals Sites Putatively Critical for Vaccine Efficacy. HZ, SNPs, VZV
42  2019 Comparisons of whole genome sequencing and phenotypic drug susceptibility testing for Mycobacterium tuberculosis causing MDR-TB and XDR-TB in Thailand. DST, MDR, Mtb, pre-XDR, TB
43  2019 Complete Paternal Uniparental Disomy of Chromosome 2 in an Asian Female Identified by Short Tandem Repeats and Whole Genome Sequencing. UPD
44  2019 Comprehensive structural variation genome map of individuals carrying complex chromosomal rearrangements. CCRs
45  2019 Continuous culture of Escherichia coli, under selective pressure by a novel antimicrobial complex, does not result in development of resistance. ITC, LVX, MICs
46  2019 Contribution of whole-genome sequencing to understanding of the epidemiology and control of meticillin-resistant Staphylococcus aureus. MRSA
47  2019 CRISPR-Based Subtyping Using Whole Genome Sequence Data Does Not Improve Differentiation of Persistent and Sporadic Listeria monocytogenes Strains. PFGE, SPs
48  2019 CRISPR/CAS9 targeted CAPTURE of mammalian genomic regions for characterization by NGS. CHO, NGS
49  2019 Cross-Border Movement of Highly Drug-Resistant Mycobacterium tuberculosis from Papua New Guinea to Australia through Torres Strait Protected Zone, 2010-2015. TSPZ
50  2019 Cryptic intronic NBAS variant reveals the genetic basis of recurrent liver failure in a child. cDNA, ILFS2, NGS, RT-PCR
51  2019 Delay in effective therapy in anidulafungin-resistant Candida tropicalis fungaemia: Potential for rapid prediction of antifungal resistance with whole-genome-sequencing. ---
52  2019 Detecting a long insertion variant in SAMD12 by SMRT sequencing: implications of long-read whole-genome sequencing for repeat expansion diseases. BAFME, SVs
53  2019 Detecting novel mutations and combined Klinefelter syndrome in Usher syndrome cases. KS, NGS, USH
54  2019 Detection of extended-spectrum beta-lactam, AmpC and carbapenem resistance in Enterobacteriaceae in beef cattle in Great Britain in 2015. ESBL
55  2019 Detection of the Novel optrA Gene Among Linezolid-Resistant Enterococci in Barcelona, Spain. MIC
56  2019 Development of a SNP barcode to genotype Babesia microti infections. HRM, SNP
57  2019 Different types of viral‑host junction found in HBV integration breakpoints in HBV‑infected patients. AHB, CHB, HBsAg, HBV
58  2019 Disease management at the wildlife-livestock interface: using whole-genome sequencing to study the role of elk in Mycobacterium bovis transmission in Michigan, USA. bTB
59  2019 Disentangling a complex nationwide Salmonella Dublin outbreak associated with raw-milk cheese consumption, France, 2015 to 2016. AOR, CI, MLVA, S. Dublin
60  2019 Draft Genome Sequence of Weissella viridescens UCO-SMC3, Isolated from the Slime of Helix aspersa Muller Snails. ---
61  2019 Draft genome sequences of KPC-2- and CTX-M-15-producing Klebsiella pneumoniae ST437 isolated from a clinical sample and urban rivers in Sao Paulo, Brazil. ST437
62  2019 Dynamic Scan Procedure for Detecting Rare-Variant Association Regions in Whole-Genome Sequencing Studies. ARIC
63  2019 Dynamics of clonal and plasmid backgrounds of Enterobacteriaceae producing acquired AmpC in Portuguese clinical settings over time. ESBLs, MLST, PFGE
64  2019 Early Detection of Emergent Extensively Drug-Resistant Tuberculosis by Flow Cytometry-Based Phenotyping and Whole-Genome Sequencing. SNPs, TB, XDR-TB
65  2019 Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly. stLFR
66  2019 Efficient Variant Set Mixed Model Association Tests for Continuous and Binary Traits in Large-Scale Whole-Genome Sequencing Studies. SKAT, SMMAT, TOPMed
67  2019 Empirical evaluation of variant calling accuracy using ultra-deep whole-genome sequencing data. ---
68  2019 Environmental and Clinical Strains of Vibrio cholerae Non-O1, Non-O139 From Germany Possess Similar Virulence Gene Profiles. TCP, TTSS
69  2019 Environmental dissemination of mcr-1 positive Enterobacteriaceae by Chrysomya spp. (common blowfly): An increasing public health risk. AMR, MCRPEC, MCRPKP, SNPs
70  2019 Epidemiological Typing of Serratia marcescens Isolates by Whole-Genome Multilocus Sequence Typing. NICUs, wgMLST
71  2019 Epidemiology and Whole-Genome Analysis of NDM-1-Producing Klebsiella pneumoniae KP3771 from Tunisia. ---
72  2019 Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia. ESC-R, ESC-R-EC
73  2019 ERVcaller: Identifying polymorphic endogenous retrovirus and other transposable element insertions using whole-genome sequencing data. ERVs, TE
74  2019 Ethical and Psychosocial Issues in Whole Genome Sequencing (WGS) for Newborns. ---
75  2019 Evaluation of a gene-by-gene approach for prospective whole-genome sequencing-based surveillance of multidrug resistant Mycobacterium tuberculosis. AD
76  2019 Evaluation of an 'all-in-one' seven-day whole-genome sequencing solution in the investigation of a Staphylococcus aureus outbreak in a neonatal intensive care unit. MLST, NICU, wgSNP
77  2019 Evaluation of the performance of copy number variant prediction tools for the detection of deletions from whole genome sequencing data. CNV, FDR
78  2019 Evaluation of whole genome sequencing and software tools for drug susceptibility testing of Mycobacterium tuberculosis. MGIT
79  2019 Evaluation of Whole Genome Sequencing Data. ---
80  2019 Evolution of Genomic Base Composition: From Single Cell Microbes to Multicellular Animals. gBGC
81  2019 Evolutionary and Genomic Insights into Clostridioides difficile Sequence Type 11: a Diverse Zoonotic and Antimicrobial-Resistant Lineage of Global One Health Importance. CDI, RT078, SNV, ST11
82  2019 Examining the Impact of Imputation Errors on Fine-Mapping Using DNA Methylation QTL as a Model Trait. HRC
83  2019 Exploring the landscape of focal amplifications in cancer using AmpliconArchitect. AA, FISH, FOXE1
84  2019 Extensive drug resistant Salmonella enterica serovar Senftenberg carrying blaNDM encoding plasmid p5558 (IncA/C) from India. NTS
85  2019 False-Positive Carbapenem-Hydrolyzing Confirmatory Tests Due to ACT-28, a Chromosomally Encoded AmpC with Weak Carbapenemase Activity from Enterobacter kobei. Carba NP, CPE, ECC
86  2019 Fecal Carriage and Whole-Genome Sequencing-Assisted Characterization of CMY-2 Beta-Lactamase-Producing Escherichia coli in Calves at Czech Dairy Cow Farm. CREC, ESBL
87  2019 First report of Salmonella 1,4,[5],12:i:- in free-ranging striped dolphins (Stenella coeruleoalba), Italy. MLVA, SNP
88  2019 First report of the new emerging global clone ST1193 among clinical isolates of extended-spectrum ss-lactamase (ESBL)-producing Escherichia coli from Germany. MLST, ST1193
89  2019 FunSPU: A versatile and adaptive multiple functional annotation-based association test of whole-genome sequencing data. LDL
90  2019 Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae. AMR
91  2019 Genetic counseling considerations with rapid genome-wide sequencing in a neonatal intensive care unit. ES, GWS, IFs, NICU
92  2019 Genetic counseling for consumer-driven whole exome and whole genome sequencing: A commentary on early experiences. WES
93  2019 Genetic Determinants and Prediction of Antibiotic Resistance Phenotypes in Helicobacter pylori. DST, SNPs
94  2019 Genetic Diversity of Salmonella Derby from the Poultry Sector in Europe. MLST, S. Derby, SNPs, UK
95  2019 Genetic environment of colistin resistance genes mcr-1 and mcr-3 in Escherichia coli from one pig farm in China. DST
96  2019 Genetic variation in the Estonian population: pharmacogenomics study of adverse drug effects using electronic health records. ADEs, EHR, SNVs
97  2019 Genetics of platelet traits in ischaemic stroke: focus on mean platelet volume and platelet count. GWAS, MPV, PheWAS, PLT, WES
98  2019 Genome Sequencing and Annotation of Bacillus subtilis UBBS-14 to Ensure Probiotic Safety. ---
99  2019 Genome Sequencing and Interrogation of Genome Databases: A Guide to Neisseria meningitidis Genomics. ---
100  2019 Genome sequencing of strains of the most prevalent clonal group of O1:K1:H7 Escherichia coli that causes neonatal meningitis in France. NMEC, STc