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■ Abbreviation / Long Form : rep-PCR / repetitive sequence-based PCR

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Total Number of Papers: 135
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Abbreviation:   rep-PCR  (>> Co-occurring Abbreviation)
Long Form:   repetitive sequence-based PCR
 Abbreviation Variation
 Long Form Variation
 Pair(Abbreviation/Long Form) Variation
No. Year Title Co-occurring Abbreviation
1  2019 An outbreak of candidemia due to Candida parapsilosis in an adult intensive care unit. BSIs, ICU
2  2019 Comparison of genotyping methods for Cunninghamella bertholletiae. RAPD
3  2018 Diversity of Carbapenemase-Producing Escherichia coli Isolates in France in 2012-2013. CP-Ec, CPE, F-NRC, MLST, ST38, STs
4  2018 Evaluation of the DiversiLab automated repetitive sequence-based PCR system for the characterization of Candidaalbicans and Candidaglabrata isolates. ---
5  2018 First molecular characterization of related cases of healthcare-associated infections involving multidrug-resistant Enterococcus faecium vanA in Algeria. HAIs, MLST, PCR, PFGE, ST, VRE
6  2018 Molecular characterisation of carbapenem-resistant Enterobacter cloacae complex in Colombia: blaKPC and the 'changing landscape'. CR-Ecl, ESBL, MLST, STs
7  2018 Multicenter prospective study on the prevalence of colistin resistance in Escherichia coli: relevance of mcr-1-positive clinical isolates in Lombardy, Northern Italy. MLST
8  2017 A Comparison of Molecular Typing Methods Applied to Enterobacter cloacae complex: hsp60 Sequencing, Rep-PCR, and MLST. MLST
9  2017 Co-existence of blaOXA-23 and blaNDM-1 genes of Acinetobacter baumannii isolated from Nepal: antimicrobial resistance and clinical significance. CRAB, MDR-AB, XDRAB
10  2017 Comparison of semi-automated commercial rep-PCR fingerprinting, spoligotyping, 12-locus MIRU-VNTR typing and single nucleotide polymorphism analysis of the embB gene as molecular typing tools for Mycobacterium bovis. MIRU-VNTR, SNP
11  2017 Genetic Diversity of Arcobacter Species of Animal and Human Origin in Andhra Pradesh, India. ERIC
12  2017 Identification and molecular epidemiology of dermatophyte isolates by repetitive-sequence-PCR-based DNA fingerprinting using the DiversiLab system in Turkey. ---
13  2017 Molecular Epidemiology Survey of Staphylococcus aureus Panton-Valentine Leukocidin-positive Isolated from Sanandaj, Iran. PCR, PVL
14  2017 The identification of fungi collected from the ceca of commercial poultry. ---
15  2017 [Fungemia and septic arthritis caused by Saprochaete capitata in a patient with fanconi aplastic anemia: a case report]. AML, MICs, MRI, SDA
16  2016 Analysis of Plant Growth-Promoting Effects of Fluorescent Pseudomonas Strains Isolated from Mentha piperita Rhizosphere and Effects of Their Volatile Organic Compounds on Essential Oil Composition. ARDRA, EOs, MVOCs, PGPR
17  2016 Antibiotic susceptibility of Acinetobacter species in intensive care unit in Montenegro. ICUs, MDR
18  2016 Characterization of Oxacillinase and Metallo-beta-Lactamas Genes and Molecular Typing of Clinical Isolates of Acinetobacter baumannii in Ahvaz, South-West of Iran. DDs, MBL, MICs, OXA, PCR
19  2016 DNA fingerprinting and antimicrobial susceptibility pattern of clinical and environmental Acinetobacter baumannii isolates: a multicentre study. Antibio-type, MBLs
20  2016 Echinocandin resistance and population structure of invasive Candida glabrata isolates from two university hospitals in Germany and Austria. ---
21  2016 Emergence of Escherichia coli Sequence Type 131 (ST131) and ST3948 with KPC-2, KPC-3 and KPC-8 carbapenemases from a Long-Term Care and Rehabilitation Facility (LTCRF) in Northern Italy. KPC-Ec, LTCRF, MICs, MLST, PFGE, ST131
22  2016 Isolation and characterization of a hydrocarbonoclastic bacterial enrichment from total petroleum hydrocarbon contaminated sediments: potential candidates for bioaugmentation in bio-based processes. ARDRA
23  2016 Microbiological Evaluation of Pork and Chicken By-Products in South Korea. ---
24  2016 Molecular Epidemiology and Clinical Impact of Acinetobacter calcoaceticus-baumannii Complex in a Belgian Burn Wound Center. Acb
25  2016 Molecular Strain Typing of Mycobacterium tuberculosis: a Review of Frequently Used Methods. DRs, MIRU-VNTR, RFLP
26  2016 Novel Group of Leaderless Multipeptide Bacteriocins from Gram-Positive Bacteria. GarKS
27  2015 Acid Resistance and Molecular Characterization of Escherichia coli O157:H7 and Different Non-O157 Shiga Toxin-Producing E. coli Serogroups. AAS, AR, STEC
28  2015 Molecular characteristics of extended-spectrum beta-lactamase-producing Escherichia coli in a university teaching hospital. ESBLs, ST131
29  2015 Molecular characterization of multidrug-resistant Klebsiella pneumoniae isolates. ESBL, ICUs, MDR
30  2015 Molecular epidemiology of carbapenem-resistant Acinetobacter baumannii isolates in the Gulf Cooperation Council States: dominance of OXA-23-type producers. CRAB, GCC, MLST
31  2015 Molecular Subtyping of Shiga Toxin-Producing Escherichia coli Using a Commercial Repetitive Sequence-Based PCR Assay. PFGE, SID, STEC
32  2015 Phenotypic and genotypic characterization of Neisseria meningitidis serogroup B isolates from Cartagena, Colombia, 2012-2014. ---
33  2015 Phylogenetic diversity and biological activity of culturable Actinobacteria isolated from freshwater fish gut microbiota. ---
34  2015 Prevalence Analysis and Molecular Characterization of Salmonella at Different Processing Steps in Broiler Slaughter Plants in South Korea. ---
35  2015 Serotypes and genotypes of invasive pneumococci in the central part of Slovenia. IPD, PCR, RT-PCR
36  2015 Surveillance of Food- and Smear-Transmitted Pathogens in European Soldiers with Diarrhea on Deployment in the Tropics: Experience from the European Union Training Mission (EUTM) Mali. ESBL, EUTM
37  2014 Comparison between phage-open-reading frame typing and automated repetitive-sequence-based PCR for typing MRSA isolates. MRSA, POT, SID
38  2014 Comparison of a semiautomated commercial repetitive-sequence-based PCR method with spoligotyping, 24-locus mycobacterial interspersed repetitive-unit-variable-number tandem-repeat typing, and restriction fragment length polymorphism-based analysis of IS6110 for Mycobacterium tuberculosis typing. DL, MIRU-VNTR
39  2014 Comparison of pulsed-field gel electrophoresis & repetitive sequence-based PCR methods for molecular epidemiological studies of Escherichia coli clinical isolates. MLST, PFGE, STs
40  2014 Dissemination of blaVIM in Greece at the peak of the epidemic of 2005-2006: clonal expansion of Klebsiella pneumoniae clonal complex 147. CCs, MLST
41  2014 DNA fingerprinting and antimicrobial susceptibility pattern of clinical and environmental Acinetobacter baumannii isolates: a multicentre study. Antibio-type, MBLs
42  2014 Extensively drug-resistant pseudomonas aeruginosa isolates containing blaVIM-2 and elements of Salmonella genomic island 2: a new genetic resistance determinant in Northeast Ohio. MBLs, MLST, PFGE, SGI2, ST233, XDR
43  2014 First Report of Bacterial Wilt Caused by Ralstonia solanacearum in Ghana, West Africa. CPG, TZC
44  2014 Infections caused by fluoroquinolone-resistant Escherichia coli following transrectal ultrasound-guided biopsy of the prostate. FQ, MLST, QRDRs, ST, TRUBP
45  2014 Molecular analysis of Acinetobacter baumannii strains isolated in Lebanon using four different typing methods. MLST, PFGE, SBT
46  2014 Molecular characteristics of vancomycin-resistant Enterococcus faecium from a tertiary care hospital in Chengdu, China: molecular characteristics of VRE in China. esp, hyl, MICs, MLST, PCR, STs, VREfm
47  2014 Molecular characterization of carbapenemase-producing Escherichia coli and Klebsiella pneumoniae in the countries of the Gulf cooperation council: dominance of OXA-48 and NDM producers. CRE, GCC
48  2014 Molecular epidemiology of NDM-1-producing Enterobacteriaceae and Acinetobacter baumannii isolates from Pakistan. ---
49  2014 Outbreaks of multidrug-resistant Acinetobacter baumannii strains in a Kenyan teaching hospital. ST
50  2014 Time-kill assay and Etest evaluation for synergy with polymyxin B and fluconazole against Candida glabrata. ICU
51  2014 Use of REP-PCR and 16S rRNA gene sequencing for comparison of Mannheimia haemolytica isolates obtained from fatal cases of bovine respiratory disease in the USA and Australia. BRD, rRNA
52  2014 [Epidemiological analysis for enterococci isolated in Aichi prefecture]. ---
53  2013 A Comparison of Subtyping Methods for Differentiating Salmonella enterica Serovar Enteritidis Isolates Obtained from Food and Human Sources. MLST, PFGE, S. Enteritidis
54  2013 Characteristics of purple nonsulfur bacteria grown under Stevia residue extractions. IAA, PNSB, Rps. palustris
55  2013 Characterization of a wild, novel nisin a-producing Lactococcus strain with an L. lactis subsp. cremoris genotype and an L. lactis subsp. lactis phenotype, isolated from Greek raw milk. RAPD
56  2013 Evaluation of five susceptibility test methods for detection of tobramycin resistance in a cluster of epidemiologically related Acinetobacter baumannii isolates. AST, BMD
57  2013 Evaluation of molecular typing methods for identification of outbreak-associated Neisseria meningitidis isolates. HV-MLVA, MLST, MLVA
58  2013 Microbial tracking of multidrug-resistant Klebsiella pneumoniae isolates in a pediatric hospital setting. MALDI-TOF MS, MDR, PFGE
59  2013 Molecular and epidemiological characterization of carbapenem-resistant Acinetobacter baumannii in non-tertiary Korean hospitals. A. baumannii
60  2013 Molecular epidemiology of integron-associated antimicrobial gene cassettes in the clinical isolates of Acinetobacter baumannii from northern Taiwan. ---
61  2013 Molecular identification and safety of Bacillus species involved in the fermentation of African oil beans (Pentaclethra macrophylla Benth) for production of Ugba. BCET-RPLA, CytK, ITS-PCR
62  2013 Molecular typing of vancomycin-resistant Enterococcus faecium with an automated repetitive sequence-based PCR microbial typing system compared with pulsed-field gel electrophoresis and multilocus sequence typing. MLST, PFGE, VREfm
63  2013 Mycobacterial interspersed repetitive-unit-variable-number tandem-repeat (MIRU-VNTR) genotyping of mycobacterium intracellulare for strain comparison with establishment of a PCR-based database. ITS1, MAC, MIRU-VNTR, PFGE, VNTR
64  2013 Prevalence, characterization, and antimicrobial susceptibility of Salmonella Gallinarum isolated from eggs produced in conventional or organic farms in South Korea. ---
65  2013 [Molecular typing methods for infection monitoring and control]. PCR, PFGE
66  2012 "Silent" dissemination of Klebsiella pneumoniae isolates bearing K. pneumoniae carbapenemase in a long-term care facility for children and young adults in Northeast Ohio. LTCFs, MLST
67  2012 Association between beta-lactamase-encoding bla(OXA-51) variants and DiversiLab rep-PCR-based typing of Acinetobacter baumannii isolates. ---
68  2012 Comparison of multilocus sequence typing (MLST) and repetitive sequence-based PCR (rep-PCR) fingerprinting for differentiation of Campylobacter jejuni isolated from broiler in Chiang Mai, Thailand. MLST
69  2012 Comparison of repetitive-sequence-based polymerase chain reaction with random amplified polymorphic DNA analysis for rapid genotyping of nontuberculosis mycobacteria. MIRU-VNTR, NTM, RAPD
70  2012 Diverse sequence types of Klebsiella pneumoniae contribute to the dissemination of blaNDM-1 in India, Sweden, and the United Kingdom. MLST, STs
71  2012 Enzootic enteropathogenic Escherichia coli infection in laboratory rabbits. EPEC
72  2012 Isolation and characterization of Cronobacter from desiccated foods in Korea. ---
73  2012 Longitudinal analysis of the temporal evolution of Acinetobacter baumannii strains in Ohio, USA, by using rapid automated typing methods. DI, MLST, ST, WW
74  2012 Methicillin-resistant Staphylococcus aureus bloodstream infections in a Japanese University Hospital between 1987 and 2004. agr, MRSA, PFGE, SCCmec
75  2012 Prevalence, phenotypic traits and molecular characterization of emetic toxin-producing Bacillus cereus strains isolated from human stools in Korea. ---
76  2012 Rapid molecular technique analysis of a KPC-3-producing Klebsiella pneumoniae outbreak in an Italian surgery unit. PFGE
77  2012 The microbiology of Bandji, palm wine of Borassus akeassii from Burkina Faso: identification and genotypic diversity of yeasts, lactic acid and acetic acid bacteria. AAB, LAB
78  2011 Clonal spread of carbapenem-resistant OXA-72-positive Acinetobacter baumannii in a Croatian university hospital. PFGE, RAPD
79  2011 Comparison of an automated repetitive sequence-based PCR microbial typing system with IS6110-restriction fragment length polymorphism for epidemiologic investigation of clinical Mycobacterium tuberculosis isolates in Korea. ---
80  2011 Determination of lactic microflora of kefir grains and kefir beverage by using culture-dependent and culture-independent methods. PCR-DGGE
81  2011 Elevated ground-level O(3) changes the diversity of anoxygenic purple phototrophic bacteria in paddy field. AnPPB
82  2011 Epidemiology and molecular characterisation of metallo-beta-lactamase-producing Enterobacteriaceae in a university hospital Intensive Care Unit in Greece. ICU, MBL, PCR
83  2011 Molecular epidemiological survey of Citrobacter freundii misidentified as Cronobacter spp. (Enterobacter sakazakii) and Enterobacter hormaechei isolated from powdered infant milk formula. PCR, PIF
84  2011 Prevalence, antibiotic resistance, and molecular characterization of Salmonella serovars in retail meat products. ---
85  2010 Analysis of an outbreak of Salmonella enteritidis by repetitive-sequence-based PCR and pulsed-field gel electrophoresis. PFGE
86  2010 Carbapenem-resistant Acinetobacter baumannii and Klebsiella pneumoniae across a hospital system: impact of post-acute care facilities on dissemination. ---
87  2010 Comparative evaluation of an automated repetitive-sequence-based PCR instrument versus pulsed-field gel electrophoresis in the setting of a Serratia marcescens nosocomial infection outbreak. NICU, PFGE
88  2010 Comparison of an automated repetitive-sequence-based PCR microbial typing system with pulsed-field gel electrophoresis for molecular typing of vancomycin-resistant Enterococcus faecium. PFGE, VRE
89  2010 Genotypic characterization of Brochothrix spp. isolated from meat, poultry and fish. ITS-PCR
90  2010 Genotypic diversity of lactic acid bacteria isolated from African traditional alkaline-fermented foods. ITS-PCR, LAB
91  2010 Hospital water filters as a source of Mycobacterium avium complex. ---
92  2010 Molecular characteristics of extended-spectrum beta-lactamase-producing Escherichia coli from the Chicago area: high prevalence of ST131 producing CTX-M-15 in community hospitals. ESBL, PCR, PFGE
93  2010 Molecular characterization of extended-spectrum beta-lactamases in clinical Escherichia coli and Klebsiella pneumoniae isolates from Surabaya, Indonesia. ESBL
94  2010 Molecular epidemiology of multidrug-resistant Acinetobacter baumannii in a single institution over a 10-year period. MLST, PFGE, ST92
95  2010 Occurrence and genotyping using automated repetitive-sequence-based PCR of methicillin-resistant Staphylococcus aureus ST398 in Southeast Austria. MRSA
96  2010 Successful application of the DiversiLab repetitive-sequence-based PCR typing system for confirmation of the circulation of a multiresistant Pseudomonas aeruginosa clone in different hospital wards. ICUs, PFGE
97  2010 Use of automated repetitive-sequence-based PCR for rapid laboratory confirmation of nosocomial outbreaks. ESBL, MRSA, PFGE
98  2009 An investigation of an outbreak: Methicillin resistant Staphylococcus aureus colonization in an intensive care cardiac unit. MRSA
99  2009 Characterization of Cronobacter recovered from dried milk and related products. PFGE
100  2009 Cohort study of molecular identification and typing of Mycobacterium abscessus, Mycobacterium massiliense, and Mycobacterium bolletii. PFGE