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Abbreviation : COGs
Long Form : Clusters of Orthologous Groups
No. Year Title Co-occurring Abbreviation
2019 Characterization of the genome of a Nocardia strain isolated from soils in the Qinghai-Tibetan Plateau that specifically degrades crude oil and of this biodegradation. GIs
2019 Comparative analyses of the variation of the transcriptome and proteome of Rhodobacter sphaeroides throughout growth. ---
2019 Highly variable mRNA half-life time within marine bacterial taxa and functional genes. ---
2019 Modified Rice Straw Enhanced Cadmium (II) Immobilization in Soil and Promoted the Degradation of Phenanthrene in Co-Contaminated Soil. Cd, DTPA, FTIR, KEGG, PAHs
2018 A CAZyme-Rich Genome of a Taxonomically Novel Rhodophyte-Associated Carrageenolytic Marine Bacterium. CAZymes, T2SS
2018 Comparative Genomics of Pseudomonas sp. Strain SI-3 Associated With Macroalga Ulva prolifera, the Causative Species for Green Tide in the Yellow Sea. DNRA
2018 Comparative proteome analysis reveals pathogen specific outer membrane proteins of Leptospira. OMPs
2018 Data on genome annotation and analysis of earthworm Eisenia fetida. GFF, GO
2018 DeepFam: deep learning based alignment-free method for protein family modeling and prediction. GPCR, pHMM
10  2018 Essential Gene Clusters Identified in Stenotrophomonas MB339 for Multiple Metal/Antibiotic Resistance and Xenobiotic Degradation. KEGGs
11  2018 Opposite Polarity Monospore Genome De Novo Sequencing and Comparative Analysis Reveal the Possible Heterothallic Life Cycle of Morchella importuna. GO, KAAS, MYA
12  2018 The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genome. NVT, PCV, VT
13  2017 A metagenomic approach to decipher the indigenous microbial communities of arsenic contaminated groundwater of Assam. ---
14  2017 COGcollator: a web server for analysis of distant relationships between homologous protein families. ---
15  2017 De novo characterization of the pine aphid Cinara pinitabulaeformis Zhang et Zhang transcriptome and analysis of genes relevant to pesticides. GO
16  2017 Development of EST-SSR markers in flowering Chinese cabbage (Brassica campestris L. ssp. chinensis var. utilis Tsen et Lee) based on de novo transcriptomic assemblies. GO
17  2017 Divergent Evolutionary Patterns of NAC Transcription Factors Are Associated with Diversification and Gene Duplications in Angiosperm. TF
18  2017 High-resolution mass spectrometry-based global proteomic analysis of probiotic strains Lactobacillus fermentum NCDC 400 and RS2. KEGG
19  2017 Identification of antibiotic resistance genes in the multidrug-resistant Acinetobacter baumannii strain, MDR-SHH02, using whole-genome sequencing. A.baumanii, ARDB, MDR, PAIs, WGS
20  2017 Prokaryotic Virus Orthologous Groups (pVOGs): a resource for comparative genomics and protein family annotation. pVOGs
21  2016 Biodegradation of DDT by Stenotrophomonas sp. DDT-1: Characterization and genome functional analysis. KEGG
22  2016 High-throughput transcriptome sequencing analysis provides preliminary insights into the biotransformation mechanism of Rhodopseudomonas palustris treated with alpha-rhamnetin-3-rhamnoside. DEGs, GO, KEGG, RPS
23  2016 Identification of Genes Relevant to Pesticides and Biology from Global Transcriptome Data of Monochamus alternatus Hope (Coleoptera: Cerambycidae) Larvae. GO, KEGG
24  2016 Metagenomic Analyses Reveal That Energy Transfer Gene Abundances Can Predict the Syntrophic Potential of Environmental Microbial Communities. ---
25  2016 [Comparative genomic analysis of peruvian strains of Mycobacterium tuberculosis]. INS-SEN, Mtb, SNPs
26  2015 BOG: R-package for Bacterium and virus analysis of Orthologous Groups. ---
27  2015 Codon Bias Patterns of E. coli's Interacting Proteins. ERI
28  2015 De novo assembly of the Japanese lawngrass (Zoysia japonica Steud.) root transcriptome and identification of candidate unigenes related to early responses under salt stress. GO, KEGG, NR
29  2015 Evolutionary conservation analysis between the essential and nonessential genes in bacterial genomes. ---
30  2015 Functional biomarkers for chronic periodontitis and insights into the roles of Prevotella nigrescens and Fusobacterium nucleatum; a metatranscriptome analysis. mRNA
31  2014 Analysis of insecticide resistance-related genes of the Carmine spider mite Tetranychus cinnabarinus based on a de novo assembled transcriptome. CEGMA, CEGs, CSM, GO, KEGG
32  2014 Core microbial functional activities in ocean environments revealed by global metagenomic profiling analyses. ---
33  2014 Gene expression profiling of Cecropin B-resistant Haemophilus parasuis. AMPs, CB, CBR
34  2014 Identification of regulatory genes implicated in continuous flowering of longan (Dimocarpus longan L.). DEGs, ELF4, GI, KEGG, NR, RNA-Seq, RPKM, SVP
35  2014 Microbiome of prebiotic-treated mice reveals novel targets involved in host response during obesity. PLA2g2, PRE, Reg3g
36  2014 The requirement for the LysR-type regulator PtrA for Pseudomonas chlororaphis PA23 biocontrol revealed through proteomic and phenotypic analysis. iTRAQ, LTTR
37  2014 Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform. GO, KEGG, NGS, SL, SSRs
38  2013 Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas. CDSs, PGPR
39  2013 Lactococcus garvieae: where is it from? A first approach to explore the evolutionary history of this emerging pathogen. MLST
40  2013 Metaproteogenomic insights beyond bacterial response to naphthalene exposure and bio-stimulation. OPU, PAH
41  2013 Sequencing and de novo assembly of the Asian clam (Corbicula fluminea) transcriptome using the Illumina GAIIx method. ESTs, GO, KEGG
42  2013 The origin of Acinetobacter baumannii TYTH-1: a comparative genomics study. CRAB
43  2012 Enhanced Type III Secretion System Expression of Atypical Shigella flexneri II:(3)4,7(8). ---
44  2012 Evolutionary patterns of carbohydrate transport and metabolism in Halomonas boliviensis as derived from its genome sequence: influences on polyester production. HGT, PHB
45  2012 Uncovering the co-evolutionary network among prokaryotic genes. ---
46  2012 Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. ---
47  2011 Analysis of transcriptome differences between resistant and susceptible strains of the citrus red mite Panonychus citri (Acari: Tetranychidae). DEGs, GO, KEGG
48  2011 Genomic insights into the metabolic potential of the polycyclic aromatic hydrocarbon degrading sulfate-reducing Deltaproteobacterium N47. PAHs
49  2010 Identification of salt-tolerant Sinorhizobium sp. strain BL3 membrane proteins based on proteomics. ---
50  2010 Proteomic analysis of the fish pathogen Flavobacterium columnare. ---
51  2010 The prevalence of gene duplications and their ancient origin in Rhodobacter sphaeroides 2.4.1. ---
52  2009 Database resources of the National Center for Biotechnology Information. BLink, CDART, CDD, GEO, MMDB, NCBI, OMIA, OMIM
53  2008 A korarchaeal genome reveals insights into the evolution of the Archaea. ---
54  2008 Comparative analysis of codon usage patterns and identification of predicted highly expressed genes in five Salmonella genomes. PHX
55  2008 Detailed proteome analysis of growing cells of the planctomycete Rhodopirellula baltica SH1T. ---
56  2008 Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes. ---
57  2008 Phylogenomic and functional analysis of pterin-4a-carbinolamine dehydratase family (COG2154) proteins in plants and microorganisms. AAHs, PCDs
58  2008 Using a strategy based on the concept of convergent evolution to identify residue substitutions responsible for thermal adaptation. ---
59  2007 Database resources of the National Center for Biotechnology Information. BLink, CDART, CDD, GEO, MMDB, NCBI, OMIA, OMIM
60  2007 Hierarchical classification of functionally equivalent genes in prokaryotes. HCGs
61  2006 Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs. ORFs
62  2005 Database resources of the National Center for Biotechnology Information. BLink, CDART, CDD, GEO, MMDB, NCBI, OMIM
63  2005 Transcription attenuation: a highly conserved regulatory strategy used by bacteria. ---
64  2004 Database resources of the National Center for Biotechnology Information: update. BLink, CCAP, CDART, CDD, GEO, MMDB, NCBI, OMIM
65  2004 PCOGR: phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of organisms. ---
66  2003 Database resources of the National Center for Biotechnology. BLink, CCAP, CDART, CDD, dbSNP, e-PCR, EV, GEO, MM, MMDB, NCBI, OMIM, ORF, PMC, RefSeq
67  2003 Gene content and organization of an 85-kb DNA segment from the genome of the phytopathogenic mollicute Spiroplasma kunkelii. ---
68  2003 Identification of functional links between genes using phylogenetic profiles. ---
69  2002 Database resources of the National Center for Biotechnology Information: 2002 update. CCAP, CDD, dbSNP, GEO, MMDB, NCBI, OMIM
70  2001 Database resources of the National Center for Biotechnology Information. CCAP, CDD, CGAP, dbSNP, GEO, MMDB, NCBI, OMIM
71  2001 Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context. ---
72  2000 Database resources of the National Center for Biotechnology Information. CCAP, CGAP, dbSNP, MMDB, NCBI, OMIM
73  1999 A phylogenetic approach to target selection for structural genomics: solution structure of YciH. ---
74  1997 A genomic perspective on protein families. ---