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Total Number of Papers: 30
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Abbreviation : DDIs
Long Form : domain-domain interactions
No. Year Title Co-occurring Abbreviation
2021 DeepIII: Predicting isoform-isoform interactions by deep neural networks and data fusion. IIIs, PPIs
2021 PPIDomainMiner: Inferring domain-domain interactions from multiple sources of protein-protein interactions. PPIDM, PPIs
2021 Structural Profiling of Bacterial Effectors Reveals Enrichment of Host-Interacting Domains and Motifs. PPIs
2020 Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs. PPIs
2020 PlaPPISite: a comprehensive resource for plant protein-protein interaction sites. DMIs, PPIs
2019 Unraveling the structural landscape of intra-chain domain interfaces: Implication in the evolution of domain-domain interactions. IS-score, PPIs
2017 PCPPI: a comprehensive database for the prediction of Penicillium-crop protein-protein interactions. GO, PPIs
2016 Classification and Exploration of 3D Protein Domain Interactions Using Kbdock. DPIs
2016 Computational determination of the effects of virulent Escherichia coli and salmonella bacteriophages on human gut. ---
10  2016 PTIR: Predicted Tomato Interactome Resource. BiFC, GO, PPIs, PTIR
11  2016 Weighted mutual information analysis substantially improves domain-based functional network models. MI, PPI
12  2015 A structure-based classification and analysis of protein domain family binding sites and their interactions. DFBSs
13  2015 Prediction of host - pathogen protein interactions between Mycobacterium tuberculosis and Homo sapiens using sequence motifs. HPIs, MDR-TB
14  2014 Computational prediction of protein interactions related to the invasion of erythrocytes by malarial parasites. PPV, RBCs
15  2014 Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks. DLIs, PPI
16  2013 KBDOCK 2013: a spatial classification of 3D protein domain family interactions. ---
17  2013 Protein docking using case-based reasoning. ---
18  2013 Reconstituting protein interaction networks using parameter-dependent domain-domain interactions. PADDS, PPIs
19  2012 Inferring domain-domain interactions from protein-protein interactions in the complex network conformation. PPIs
20  2010 DOMINE: a comprehensive collection of known and predicted domain-domain interactions. ---
21  2010 Unraveling the conundrum of seemingly discordant protein-protein interaction datasets. PPIs
22  2009 A discriminative approach for identifying domain-domain interactions from protein-protein interactions. PPIs
23  2009 A top-down approach to infer and compare domain-domain interactions across eight model organisms. PPIs
24  2009 Evaluation of different domain-based methods in protein interaction prediction. PPIs
25  2009 GAIA: a gram-based interaction analysis tool--an approach for identifying interacting domains in yeast. GAIA, PPIs
26  2009 Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks. GO, K-GIDDI, PPIs
27  2008 An integrative domain-based approach to predicting protein-protein interactions. ILP, PPIs
28  2008 Are protein complexes made of cores, modules and attachments? ---
29  2007 Bayesian methods for predicting interacting protein pairs using domain information. PPIs
30  2006 Evolutionary conservation of domain-domain interactions. PPIs