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Abbreviation : ENMs
Long Form : elastic network models
No. Year Title Co-occurring Abbreviation
2019 Oncogenic mutations at the EGFR ectodomain structurally converge to remove a steric hindrance on a kinase-coupled cryptic epitope. ECD, EGFR, GBMs, MD, SAXS
2018 Comparisons of Protein Dynamics from Experimental Structure Ensembles, Molecular Dynamics Ensembles, and Coarse-Grained Elastic Network Models. MD, PCA
2018 Kinematic Flexibility Analysis: Hydrogen Bonding Patterns Impart a Spatial Hierarchy of Protein Motion. ---
2018 Protein dynamic communities from elastic network models align closely to the communities defined by molecular dynamics. MD
2018 Recent Advances on the Network Models in Target-based Drug Discovery. PPINs, PSNs
2017 DynOmics: dynamics of structural proteome and beyond. ANM, GNM
2017 Fluctuation matching approach for elastic network model and structure-based model of biomacromolecules. ---
2017 Intrinsic Dynamics Analysis of a DNA Octahedron by Elastic Network Model. ---
2017 Jumping between protein conformers using normal modes. ---
10  2016 New generation of elastic network models. ---
11  2015 Comparing the intrinsic dynamics of multiple protein structures using elastic network models. ---
12  2015 Elastic network models for RNA: a comparative assessment with molecular dynamics and SHAPE experiments. ---
13  2015 Robust elastic network model: A general modeling for precise understanding of protein dynamics. ADPs, RENM, VDOS
14  2015 Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions. ---
15  2014 A mechanistic stress model of protein evolution accounts for site-specific evolutionary rates and their relationship with packing density and flexibility. LPD, RSA
16  2014 Elastic network models capture the motions apparent within ensembles of RNA structures. PCs
17  2014 Exploring the conformational transitions of biomolecular systems using a simple two-state anisotropic network model. ---
18  2013 Elastic Network Models of Nucleic Acids Flexibility. ---
19  2013 Evaluation of Protein Elastic Network Models Based on an Analysis of Collective Motions. MD
20  2012 Are different stoichiometries feasible for complexes between lymphotoxin-alpha and tumor necrosis factor receptor 1? CRD4, LT
21  2012 Constraints imposed by the membrane selectively guide the alternating access dynamics of the glutamate transporter GltPh. ---
22  2012 Coupling between catalytic loop motions and enzyme global dynamics. PCA
23  2012 Elastic Network Models are Robust to Variations in Formalism. MD
24  2012 Elastic network normal modes provide a basis for protein structure refinement. ANM
25  2011 MAVENs: motion analysis and visualization of elastic networks and structural ensembles. ---
26  2011 Validating and improving elastic network models with molecular dynamics simulations. ---
27  2010 Approaching Elastic Network Models to Molecular Dynamics Flexibility. MD
28  2010 Optimal modeling of atomic fluctuations in protein crystal structures for weak crystal contact interactions. ADPs
29  2009 Bend-twist-stretch model for coarse elastic network simulation of biomolecular motion. BTS
30  2009 Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II. ---
31  2009 Protein elastic network models and the ranges of cooperativity. ---
32  2008 Multiscale methods for macromolecular simulations. QM/MM
33  2008 Structural flexibility in proteins: impact of the crystal environment. ---
34  2007 Markov methods for hierarchical coarse-graining of large protein dynamics. GNM
35  2005 UMass Morph Server: Macromolecular Dynamics Analyses Using Elastic Network Models. ENI, MD, NMA, UMMS