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Abbreviation : ET
Long Form : evolutionary trace
No. Year Title Co-occurring Abbreviation
2018 Computational genome-wide identification of heat shock protein genes in the bovine genome. HSPs, sHSP
2016 Intramolecular allosteric communication in dopamine D2 receptor revealed by evolutionary amino acid covariation. D2R, GPCRs
2016 UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures. ---
2015 Determinants of endogenous ligand specificity divergence among metabotropic glutamate receptors. L-SOP, mGluRs
2015 Targeting the adaptability of heterogeneous aneuploids. ---
2014 Amino acid sequence and structural comparison of BACE1 and BACE2 using evolutionary trace method. BACE1, BACE2
2014 Prediction and redesign of protein-protein interactions. PPI
2013 Recent advances in functional region prediction by using structural and evolutionary information - Remaining problems and future extensions. ---
2012 An evolutionary conservation-based method for refining and reranking protein complex structures. ---
10  2012 Evolutionary trace for prediction and redesign of protein functional sites. ---
11  2011 Evolutionary traces decode molecular mechanism behind fast pace of myosin XI. ---
12  2011 Separation of recombination and SOS response in Escherichia coli RecA suggests LexA interaction sites. ---
13  2011 The pyrokinin/ pheromone biosynthesis-activating neuropeptide (PBAN) family of peptides and their receptors in Insecta: evolutionary trace indicates potential receptor ligand-binding domains. PBAN
14  2010 A combination of evolutionary trace method, molecular surface accessibility and hydrophobicity analysis to design a high hydrophobicity laccase. PAHs
15  2010 An angiotensin II type 1 receptor activation switch patch revealed through evolutionary trace analysis. Ang II
16  2010 Evolution: a guide to perturb protein function and networks. ---
17  2010 Evolutionary trace analysis of CYP51 family: implication for site-directed mutagenesis and novel antifungal drug design. CaCYP51
18  2010 Evolutionary trace annotation of protein function in the structural proteome. ETA, GO, SG
19  2010 Sequence and structure continuity of evolutionary importance improves protein functional site discovery and annotation. ETA
20  2009 Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates. ETA
21  2009 Identification of functionally important residues/domains in membrane proteins using an evolutionary approach coupled with systematic mutational analysis. ---
22  2009 Joint evolutionary trees: a large-scale method to predict protein interfaces based on sequence sampling. iJET, JET
23  2009 Molecular modeling and epitopes mapping of human adenovirus type 3 hexon protein. ELISA, HAdV, NT, RET, SAS
24  2009 Quasispecies dynamics and molecular evolution of human norovirus capsid P region during chronic infection. ACR, HBGA
25  2008 De-orphaning the structural proteome through reciprocal comparison of evolutionarily important structural features. ETA
26  2008 Evolutionary trace analysis at the ligand binding site of laccase. ---
27  2007 Docking of protein molecular surfaces with evolutionary trace analysis. ---
28  2006 Binding site prediction of galanin peptide using evolutionary trace method. ---
29  2006 ET viewer: an application for predicting and visualizing functional sites in protein structures. ETV
30  2006 Rank information: a structure-independent measure of evolutionary trace quality that improves identification of protein functional sites. RI
31  2005 Algorithms for structural comparison and statistical analysis of 3D protein motifs. MA
32  2005 Correlated evolutionary pressure at interacting transcription factors and DNA response elements can guide the rational engineering of DNA binding specificity. ---
33  2005 Entropy and oligomerization in GPCRs. ---
34  2005 Evolutionary trace-based peptides identify a novel asymmetric interaction that mediates oligomerization in nuclear receptors. GCNF, TRIF
35  2005 Rod and cone opsin families differ in spectral tuning domains but not signal transducing domains as judged by saturated evolutionary trace analysis. SET
36  2004 Evolutionary epitopes of Hsp90 and p23: implications for their interaction. ---
37  2004 Evolutionary trace analysis of ionotropic glutamate receptor sequences and modeling the interactions of agonists with different NMDA receptor subunits. NMDA
38  2004 Evolutionary trace of G protein-coupled receptors reveals clusters of residues that determine global and class-specific functions. GPCR
39  2004 Exploring structural features of the interaction between the scorpion toxinCnErg1 and ERG K+ channels. ---
40  2002 JEvTrace: refinement and variations of the evolutionary trace in JAVA. MSA
41  2001 Dimerization of G-protein-coupled receptors. GPCR, RGS
42  2001 Prediction and confirmation of a site critical for effector regulation of RGS domain activity. RGS
43  2001 Transmission/disequilibrium test meets measured haplotype analysis: family-based association analysis guided by evolution of haplotypes. MHA, TDT
44  2000 A regulator of G protein signaling interaction surface linked to effector specificity. RGS
45  1996 Evolutionarily conserved Galphabetagamma binding surfaces support a model of the G protein-receptor complex. ---