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Abbreviation : FFPE
Long Form : formalin-fixed paraffin-embedded
No. Year Title Co-occurring Abbreviation
2020 A novel lymphoma-associated macrophage interaction signature (LAMIS) provides robust risk prognostication in diffuse large B-cell lymphoma clinical trial cohorts of the DSHNHL. DE, DLBCL, LAMIS
2020 A novel use of random priming-based single-strand library preparation for whole genome sequencing of formalin-fixed paraffin-embedded tissue samples. DDAT, dsDNA, ssDNA, WGS
2020 Accelerated instability testing reveals quantitative mass spectrometry overcomes specimen storage limitations associated with PD-L1 immunohistochemistry. IHC, MS, PD-L1
2020 An Isothermal, Multiplex Amplification Assay for Detection and Genotyping of Human Papillomaviruses in Formalin-Fixed, Paraffin-Embedded Tissues. HPV, HR
2020 An optimized BRCA1/2 next-generation sequencing for different clinical sample types. FF, NGS, OC, PPV, VAF
2020 Assessing the diagnostic yield of targeted next-generation sequencing for melanoma and gastrointestinal tumors. CRC, GIST, NGS, TST26
2020 Biological and Clinical Significance of GATA3 Detected from TCGA Database and FFPE Sample in Bladder Cancer Patients. GATA3
2020 Biomarker recommendation for PD-1/PD-L1 immunotherapy development in pediatric cancer based on digital image analysis of PD-L1 and immune cells. DIA, TIL
2020 Characterizations of Gene Alterations in Melanoma Patients from Chinese Population. ---
10  2020 Co-occurring genetic alterations and primary EGFR T790M mutations detected by NGS in pre-TKI-treated NSCLCs. MAF, NGS, NSCLC
11  2020 Comparison between Fluorescence in-situ Hybridization (FISH), Reverse Transcriptase PCR (RT-PCR) and fragment analysis, for detection of t (X; 18) (p11; q11) translocation in synovial sarcomas. FISH, IHC, RT-PCR, SS
12  2020 Comparison between two different next generation sequencing platforms for clinical relevant gene mutation test in solid tumours. ---
13  2020 Complete response to trastuzumab and chemotherapy in recurrent urothelial bladder carcinoma with HER2 gene amplification: A case report. UBC
14  2020 Concordance in molecular genetic analysis of tumour tissue, plasma, and exhaled breath condensate samples from lung cancer patients. EBC
15  2020 Crosstalk between DNA methylation and gene expression in colorectal cancer, a potential plasma biomarker for tracing this tumor. CRC
16  2020 Detection of mRNA of Telomerase Protein in Benign Naevi and Melanomas Using RNAscope. hTERT
17  2020 Development and Validation of a Novel and Rapid Molecular Detection Method for High-Risk Human Papillomavirus in Formalin-Fixed, Paraffin-Embedded Tumor Tissue. HNSCC, HPV
18  2020 Development of Malignancy-Risk Gene Signature Assay for Predicting Breast Cancer Risk. BC, MR
19  2020 Diagnostic value of fluorescein-labeled chitinase staining in formalin-fixed and paraffin-embedded tissues of fungal disease. GMS, PAS
20  2020 DNA isolation from achieved formalin-fixed paraffin-embedded tissues in a series of 212 thyroid carcinoma cases: the influence of preanalytical factors on DNA quantity and purity. ---
21  2020 Evaluation of the Use of Formalin-Fixed and Paraffin-Embedded Archive Gastric Tissues for Microbiota Characterization Using Next-Generation Sequencing. NGS, OTUs
22  2020 Fluorescence in-situ hybridisation for TP63 rearrangements in T cell lymphomas: single-site experience of 470 patients and implications for clinical testing. BAP
23  2020 High-Plex Spatially Resolved RNA and Protein Detection Using Digital Spatial Profiling: A Technology Designed for Immuno-oncology Biomarker Discovery and Translational Research. DMD, DSP, IO, PC-oligos
24  2020 High-Throughput Multiplex Immunohistochemical Imaging of the Tumor and Its Microenvironment. GC, mIHC, TME
25  2020 HYPERsol: High-Quality Data from Archival FFPE Tissue for Clinical Proteomics. HYPERsol
26  2020 Identifying Predictive Factors of Recurrence after Radical Resection in Gastric Cancer by RNA Immune-oncology Panel. DFS, GC, RIOP
27  2020 Immunohistochemical evidence of canine morbillivirus (canine distemper) infection in coatis (Nasua nasua) from Southern Brazil. CPV-2, IHC
28  2020 Immunoperoxidase and Immunofluorescence on Formalin-Fixed, Paraffin-Embedded Tissue Sections versus Immunofluorescence on Frozen Sections in the Assessment of Renal Biopsies. IF-F, IP-P
29  2020 Impact of different stabilization methods on RT-qPCR results using human lung tissue samples. RIN, RNL, SF, SF-OCT
30  2020 Independent prognostic value of ultra-sensitive quantification of tumor pre-treatment T790M subclones in EGFR mutated non-small cell lung cancer (NSCLC) treated by first/second generation TKI, depends on variant allele frequency (VAF): Results of the French cooperative thoracic intergroup (IFCT) biomarkers France project. CI, ddPCR, HR, NSCLC, OS, PFS, VAF
31  2020 Integrin alpha7 and Extracellular Matrix Laminin 211 Interaction Promotes Proliferation of Acute Myeloid Leukemia Cells and Is Associated with Granulocytic Sarcoma. AML, GS, ITGA7
32  2020 Microsatellite instability status is determined by targeted sequencing with MSIcall in 25 cancer types. AUC, IHC, MSI, MSI-PCR, ROC
33  2020 Molecular Analysis of Liquid-Based Cytological Specimen Using Virtually Positive Sputum with Adenocarcinoma Cells. EGFR, FRET, LBC, NGS, qPCR, TTF-1
34  2020 Multiplex Immunofluorescence Assays. ---
35  2020 Polioencephalomyelitis in Domestic Swine Associated With Porcine Astrovirus Type 3. CNS, PoAstV3, RT-qPCR
36  2020 Preclinical activity of sacituzumab govitecan (IMMU-132) in uterine and ovarian carcinosarcomas. ADC, CS, SG
37  2020 Prevalence of Epstein-Barr virus (EBV) in Iranian Breast Carcinoma Patients. BC, EBV, PCR
38  2020 Proteomic Protocols for Differential Protein Expression Analyses. LFQ, SDC, TMT
39  2020 Quantification of HER1, HER2 and HER3 by time-resolved Forster resonance energy transfer in FFPE triple-negative breast cancer samples. HER, TNBC, TR-FRET
40  2020 Quantitative Proteomics for Monitoring Renal Transplant Injury. STA, TCMR
41  2020 Quantitative real-time PCR assay with immunohistochemical evaluation of HER2/neu oncogene in breast cancer patients and its correlation with clinicopathological findings. IHC, PCR
42  2020 Rapid fully-automated assay for routine molecular diagnosis of BRAF mutations for personalized therapy of low grade gliomas. FA-PCR, LGG, SOP
43  2020 Rapid On-site Molecular Evaluation in thyroid cytopathology: A same-day cytological and molecular diagnosis. FNAs, ROME
44  2020 RCasFISH: CRISPR/dCas9-Mediated in Situ Imaging of mRNA Transcripts in Fixed Cells and Tissues. HER2, RCasFISH, smFISH, SNR
45  2020 Real-time PCR assay for detecting illicit steroid administration in veal calves allows reliable biomarker profiling of formalin-fixed, paraffin-embedded (FFPE) archival tissue samples. ---
46  2020 Reverse transcriptase multiplex ligation-dependent probe amplification in endomyocardial biopsies for the diagnosis of cardiac allograft rejection. ACR, AMR, EMB, RT-MLPA
47  2020 Sample preparation of formalin-fixed paraffin-embedded tissue sections for MALDI-mass spectrometry imaging. MALDI, S/N, SOP
48  2020 SP-A and TLR4 localization in lung tissue of SM-exposed patients. SM, SP-A, TLR4
49  2020 Spectrochemical differentiation of meningioma tumours based on attenuated total reflection Fourier-transform infrared (ATR-FTIR) spectroscopy. ATR-FTIR, CNS, PCA-LDA, PLS-DA
50  2020 Src Kinase Is Biphosphorylated at Y416/Y527 and Activates the CUB-Domain Containing Protein 1/Protein Kinase C delta Pathway in a Subset of Triple-Negative Breast Cancers. CDCP1, FOXA1, PKCdelta, SFKs, TNBC
51  2020 Standardization of the preanalytical phase of DNA extraction from fixed tissue for next-generation sequencing analyses. NGS
52  2020 Structural Studies of Epithelial Mesenchymal Transition Breast Tissues. EMT, SAXS
53  2020 Systematic evaluation of PAXgene tissue fixation for the histopathological and molecular study of lung cancer. FNAs, NGS, PFPE
54  2020 Targeted deep sequencing of cell-free DNA in serous body cavity fluids with malignant, suspicious, and benign cytology. cfDNA, NGS
55  2020 The complexity of screening PMS2 in DNA isolated from formalin-fixed paraffin-embedded material. MMR, PSVs
56  2020 The Detection and Association of Canine Papillomavirus with Benign and Malignant Skin Lesions in Dogs. CPV, HPV, IHC, PV, SCCs
57  2020 The Search for Molecular Markers in a Gene-Orphan Case Study of a Pediatric Spinal Cord Pilocytic Astrocytoma. ---
58  2020 Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: comparison of gene expression profiling approaches. FF
59  2020 Use of a plasma test for verifying epidermal growth factor receptor gene (EGFR) mutations in fluid samples from non-small cell lung cancer patients. EGFR, EGFR-TKIs, NSCLC
60  2020 Using RNA Sequencing to Characterize the Tumor Microenvironment. ---
61  2020 Using the Chemical Noise Background in MALDI Mass Spectrometry Imaging for Mass Alignment and Calibration. MALDI-MSI, TOF
62  2020 Validating a targeted next-generation sequencing assay and profiling somatic variants in Chinese non-small cell lung cancer patients. MAF, NGS, NSCLC
63  2019 A 40-Marker Panel for High Dimensional Characterization of Cancer Immune Microenvironments by Imaging Mass Cytometry. ---
64  2019 A Case of Metastatic Biliary Tract Cancer Diagnosed Through Identification of an IDH1 Mutation. BTCs, ctDNA
65  2019 A Clinically Applicable Gene-Expression Classifier Reveals Intrinsic and Extrinsic Contributions to Consensus Molecular Subtypes in Primary and Metastatic Colon Cancer. mCRC
66  2019 A combined gene expression tool for parallel histological prediction and gene fusion detection in non-small cell lung cancer. AC, LCNEC, NSCLC, SqCC, SSP
67  2019 A comparative analysis of RNA sequencing methods with ribosome RNA depletion for degraded and low-input total RNA from formalin-fixed and paraffin-embedded samples. ---
68  2019 A direct immunohistochemistry (IHC) method improves the intraoperative diagnosis of breast papillary lesions including breast cancer. IHC, SMMHC
69  2019 A Method to Reuse Archived H&E Stained Histology Slides for a Multiplex Protein Biomarker Analysis. ---
70  2019 A Multigene Assay Determines Risk of Recurrence in Patients with Triple-Negative Breast Cancer. DFS, MHCII, TNBC
71  2019 A Multiplex Quantitative Reverse Transcription Polymerase Chain Reaction Assay for the Detection of KIAA1549-BRAF Fusion Transcripts in Formalin-Fixed Paraffin-Embedded Pilocytic Astrocytomas. cDNA, PAs, qRT-PCR
72  2019 A New and Simple TRG Multiplex PCR Assay for Assessment of T-cell Clonality: A Comparative Study from the EuroClonality Consortium. TRG
73  2019 A novel genomic panel as an adjunctive diagnostic tool for the characterization and profiling of breast Fibroepithelial lesions. FAs, FELs, PTs
74  2019 A Novel Predictor Tool of Biochemical Recurrence after Radical Prostatectomy Based on a Five-MicroRNA Tissue Signature. BCR, miRNAs, PCa, RP
75  2019 A practical approach to enrich intact tryptic N-glycopeptides through size exclusion chromatography and hydrophilicity (SELIC) using an acrylamide-agarose composite gel system. SELIC
76  2019 A practical strategy for immunofluorescent detecting multiple targets in mouse tissues without restrictions on the host specious resources of the primary antibodies. IF
77  2019 A preliminary study of microRNA expression in different types of primary melanoma. miRNAs
78  2019 A recommended and verified procedure for in situ tryptic digestion of formalin-fixed paraffin-embedded tissues for analysis by matrix-assisted laser desorption/ionization imaging mass spectrometry. MALDI IMS
79  2019 A Single-Tube, EuroClonality-Inspired, TRG Clonality Multiplex PCR Aids Management of Patients with Enteropathic Diseases, including from Formaldehyde-Fixed, Paraffin-Embedded Tissues. ---
80  2019 A study of detection and comparison of immunofluorescence on formalin-fixed paraffin-embedded tissue with fresh frozen renal biopsy specimen. IF-P
81  2019 A tailored molecular profiling programme for children with cancer to identify clinically actionable genetic alterations. ctDNA, NGS
82  2019 Aberrant expression and high-frequency mutations of SHARPIN in nonmelanoma skin cancer. BCC, KA, NMSC, SCC
83  2019 Aberrant expression of ADAM9 in ovarian cancer and its clinical significance. ADAM9, DFS, OC, OS
84  2019 Absence of EGFR C797S Mutation in Tyrosine Kinase Inhibitor-Naive Non-Small Cell Lung Cancer Tissues. NSCLC, TKIs
85  2019 Active Organic Solvent-Free Paraffin Removal is the Key to Standardizing Extraction of Biomolecules from FFPE Tissues. AFA
86  2019 Aldolase B impairs DNA mismatch repair and induces apoptosis in colon adenocarcinoma. ALDOB, dMMR, MMR, MSI, MSS, OS
87  2019 Aligning the Aligners: Comparison of RNA Sequencing Data Alignment and Gene Expression Quantification Tools for Clinical Breast Cancer Research. GO, NGS
88  2019 All-Exon TP53 Sequencing and Protein Phenotype Analysis Accurately Predict Clinical Outcome after Surgical Treatment of Head and Neck Squamous Cell Carcinoma. HNSCC
89  2019 An Exceptional Case of Liver-Restricted High-Grade B-Cell Lymphoma in a Patient with Clinical History of HBV and HCV Coinfections. PHLs
90  2019 An Improved NGS Library Construction Approach Using DNA Isolated from Human Cancer Formalin-Fixed Paraffin-Embedded Samples. NGS
91  2019 An Introduction to the Performance of Immunohistochemistry. eds, IHC
92  2019 Analysis of BRCAness with multiplex ligation-dependent probe amplification using formalin-fixed and paraffin-embedded pancreatic ductal adenocarcinoma tissue obtained via endoscopic ultrasound-guided fine-needle aspiration biopsy. EUS-FNAB, MLPA, PDAC
93  2019 Analysis of mRNA, miRNA, and DNA in Bone Cells by RT-qPCR and In Situ Hybridization. CISH, DIG, miRNAs, RT-qPCR
94  2019 Analysis of NTRK expression in gastric and esophageal adenocarcinoma (AGE) with pan-TRK immunohistochemistry. NTRK
95  2019 Analytical Evaluation of an NGS Testing Method for Routine Molecular Diagnostics on Melanoma Formalin-Fixed, Paraffin-Embedded Tumor-Derived DNA. NGS
96  2019 Analytical Validation of Multiplex Biomarker Assay to Stratify Colorectal Cancer into Molecular Subtypes. CMS, CRCA, CRCs
97  2019 Applicability of eucalyptus wood waste extracts for the histological staining of connective tissue. RT
98  2019 Archive Mining Brings to Light a 25-Year Old Astrovirus Encephalitis Case in a Sheep. BoAstV-CH15, OvAstV-CH16
99  2019 Are formalin-fixed and paraffin-embedded tissues fit for proteomic analysis? ---
100  2019 Array Comparative Genomic Hybridization Analysis Reveals Significantly Enriched Pathways in Canine Oral Melanoma. aCGH, cMM, CNAs, COM, hMM