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Total Number of Papers: 1927
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Abbreviation : OTUs
Long Form : operational taxonomic units
No. Year Title Co-occurring Abbreviation
2019 A 16S rDNA PCR-based theoretical to actual delta approach on culturable mock communities revealed severe losses of diversity information. MBCs
2019 A different gut microbiome linked to inflammation found in cirrhotic patients with and without hepatocellular carcinoma. HCC, IL-6, TNF-alpha
2019 A leafless epiphytic orchid, Taeniophyllum glandulosum Blume (Orchidaceae), is specifically associated with the Ceratobasidiaceae family of basidiomycetous fungi. ---
2019 A prospective study to examine the association of the urinary and fecal microbiota with prostate cancer diagnosis after transrectal biopsy of the prostate using 16sRNA gene analysis. GS, PC
2019 A single ectomycorrhizal plant root system includes a diverse and spatially structured fungal community. ECM
2019 Alterations of the Mice Gut Microbiome via Schistosoma japonicum Ova-Induced Granuloma. ---
2019 Antibiotic supplement in feed can perturb the intestinal microbial composition and function in Pacific white shrimp. ARGs, CIP, CTRL, SUL
2019 Arbuscular mycorrhizal fungi in soil, roots and rhizosphere of Medicago truncatula: diversity and heterogeneity under semi-arid conditions. AMF, pNTX, SE, VTX
2019 Ascaris suum infection was associated with a worm-independent reduction in microbial diversity and altered metabolic potential in the porcine gut microbiome. ---
10  2019 Assessing the Microbiota of Black Soldier Fly Larvae (Hermetia illucens) Reared on Organic Waste Streams on Four Different Locations at Laboratory and Large Scale. ---
11  2019 Assessment of the Diversity of Fungal Community Composition Associated With Vachellia pachyceras and Its Rhizosphere Soil From Kuwait Desert. ITS, LSU
12  2019 Bacterial communities of three plant species from Pb-Zn contaminated sites and plant-growth promotional benefits of endophytic Microbacterium sp. (strain BXGe71). EB, HM
13  2019 Bacterial community analysis of marine recirculating aquaculture system bioreactors for complete nitrogen removal established from a commercial inoculum. ---
14  2019 Bacterial community pattern along the sediment seafloor of the Arctic fjorden (Kongsfjorden, Svalbard). ---
15  2019 Bacterial community structure and functional diversity in subsurface seawater from the western coastal ecosystem of the Arabian Sea, India. AWCD, BOD, CCA, DO, PCA, TC, TDS, TIC, TOC
16  2019 Bacterial Diversity in Replicated Hydrogen Sulfide-Rich Streams. ---
17  2019 Bacterial release from pipe biofilm in a full-scale drinking water distribution system. HNA, UF
18  2019 Beyond the visual: using metabarcoding to characterize the hidden reef cryptobiome. ARMS
19  2019 Biological ball filters regulate bacterial communities in marron (Cherax cainii) culture system. LEfSe
20  2019 Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations. ---
21  2019 Characterisation of the Pacific Oyster Microbiome During a Summer Mortality Event. ---
22  2019 Characteristics of microbial communities and intestinal pathogenic bacteria for migrated Larus ridibundus in southwest China. PFGE
23  2019 Characterization of Bacterial Communities in Breeding Waters of Anopheles darlingi in Manaus in the Amazon Basin Malaria-Endemic Area. ---
24  2019 Characterization of the gut microbiota of invasive Agrilus mali Matsumara (Coleoptera: Buprestidae) using high-throughput sequencing: uncovering plant cell-wall degrading bacteria. ---
25  2019 Characterization of the otic bacterial microbiota in dogs with otitis externa compared to healthy individuals. ---
26  2019 Circulating levels of the anti-oxidant indoleproprionic acid are associated with higher gut microbiome diversity. IPA
27  2019 Co-occurrence Networks Among Bacteria and Microbial Eukaryotes of Lake Baikal During a Spring Phytoplankton Bloom. ---
28  2019 Commercial formulation amendment transiently affects the microbial composition but not the biogas production of a full scale methanogenic UASB reactor. COD, T-RFLP, UASB
29  2019 Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California. ---
30  2019 Community structures and genomic features of undesirable white colony-forming yeasts on fermented vegetables. WCFYs
31  2019 Comparison of the fecal microbiota of two free-ranging Chinese subspecies of the leopard (Panthera pardus) using high-throughput sequencing. ---
32  2019 Comparison of the Intestinal Microbial Community in Ducks Reared Differently through High-Throughput Sequencing. ---
33  2019 Composition of gut microbiota and its association with body mass index and lifestyle factors in a cohort of 7-18 years old children from the American Gut Project. BMI
34  2019 Coupling between taxonomic and functional diversity in protistan coastal communities. ---
35  2019 Coupling growth kinetics modeling with machine learning reveals microbial immigration impacts and identifies key environmental parameters in a biological wastewater treatment process. ---
36  2019 Cover cropping can be a stronger determinant than host crop identity for arbuscular mycorrhizal fungal communities colonizing maize and soybean. AMF, CLAM test
37  2019 Cryptic Diversity, but to What Extent? Discordance Between Single-Locus Species Delimitation Methods Within Mainland Anoles (Squamata: Dactyloidae) of Northern Central America. COI
38  2019 Cyanobiont diversity in six Azolla spp. and relation to Azolla-nutrient profiling. ---
39  2019 Daily Consumption of Orange Juice from Citrus sinensis L. Osbeck cv. Cara Cara and cv. Bahia Differently Affects Gut Microbiota Profiling as Unveiled by an Integrated Meta-Omics Approach. ---
40  2019 Deciphering the Assembly Processes of the Key Ecological Assemblages of Microbial Communities in Thirteen Full-Scale Wastewater Treatment Plants. AS
41  2019 Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils. ---
42  2019 Distribution patterns of dinoflagellate communities along the Songhua River. RDA, TDS
43  2019 Diversity and community of methanogens in the large intestine of finishing pigs. GWP, mcrA, VFAs
44  2019 Diversity and composition of the gut microbiota of Atlantic salmon (Salmo salar) farmed in Irish waters. ---
45  2019 Diversity of photosynthetic picoeukaryotes in eutrophic shallow lakes as assessed by combining flow cytometry cell-sorting and high throughput sequencing. FTP, PPE
46  2019 Diversity of the microbial community and cultivable protease-producing bacteria in the sediments of the Bohai Sea, Yellow Sea and South China Sea. BHS, CCA, NGS, SCS, YS
47  2019 DMSC: A Dynamic Multi-Seeds Method for Clustering 16S rRNA Sequences Into OTUs. MCC, MCS, NGS, NMI
48  2019 Does birth mode modify associations of maternal pre-pregnancy BMI and gestational weight gain with the infant gut microbiome? ---
49  2019 Dynamics of the gut microbiota in developmental stages of Litopenaeus vannamei reveal its association with body weight. KM
50  2019 Effect of Mucine 4 and Fucosyltransferase 1 genetic variants on gut homoeostasis of growing healthy pigs. FUT1, MUC4, PNA, UEA
51  2019 Effects of dietary supplementation with essential oils and organic acids on the growth performance, immune system, fecal volatile fatty acids, and microflora community in weaned piglets. VFAs
52  2019 Effects of metal and metalloid pollutants on the microbiota composition of feces obtained from twelve commercial pig farms across China. ---
53  2019 Emerging from the ice-fungal communities are diverse and dynamic in earliest soil developmental stages of a receding glacier. SSD
54  2019 Endophytic Bacterial Communities Associated with Roots and Leaves of Plants Growing in Chilean Extreme Environments. AD, PAT
55  2019 Endophytic Communities of Transgenic Poplar Were Determined by the Environment and Niche Rather Than by Transgenic Events. ---
56  2019 Evaluation and entomopathogenicity of gut bacteria associated with dauer juveniles of Oscheius chongmingensis (Nematoda: Rhabditidae). ---
57  2019 Experimental evaluation on the applicability of necrobiome analysis in forensic veterinary science. ---
58  2019 Explore mediated co-varying dynamics in microbial community using integrated local similarity and liquid association analysis. eLSA
59  2019 Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs. FE
60  2019 Exposure to Titanium Dioxide Nanoparticles During Pregnancy Changed Maternal Gut Microbiota and Increased Blood Glucose of Rat. GD, PICRUSt
61  2019 Feeding Essential Oils to Neonatal Holstein Dairy Calves Results in Increased Ruminal Prevotellaceae Abundance and Propionate Concentrations. EO, SCFA
62  2019 Functional Genes and Bacterial Communities During Organohalide Respiration of Chloroethenes in Microcosms of Multi-Contaminated Groundwater. 16S rRNA
63  2019 Fungi Originating From Tree Leaves Contribute to Fungal Diversity of Litter in Streams. ---
64  2019 Gut microbiota composition and bone mineral loss-epidemiologic evidence from individuals in Wuhan, China. BMD, rRNA
65  2019 Harnessing microfluidic streak plate technique to investigate the gut microbiome of Reticulitermes chinensis. MSP
66  2019 High throughput cultivation-based screening on porous aluminum oxide chips allows targeted isolation of antibiotic resistant human gut bacteria. SDD
67  2019 High-throughput sequencing approach in analysis of microbial communities colonizing natural gas pipelines. ---
68  2019 Host plant phylogeny and geographic distance strongly structure Betulaceae-associated ectomycorrhizal fungal communities in Chinese secondary forest ecosystems. EM
69  2019 Impact of Aquaculture Practices on Intestinal Bacterial Profiles of Pacific Whiteleg Shrimp Litopenaeus vannamei. ---
70  2019 Impact of Introduction of Arbuscular Mycorrhizal Fungi on the Root Microbial Community in Agricultural Fields. AM
71  2019 Impact of planktonic low nucleic acid-content bacteria to bacterial community structure and associated ecological functions in a shallow lake. HNA, LNA
72  2019 Impact of solids residence time on community structure and nutrient dynamics of mixed phototrophic wastewater treatment systems. HRT, SRT
73  2019 Impacts of Arsenic and Antimony Co-Contamination on Sedimentary Microbial Communities in Rivers with Different Pollution Gradients. ---
74  2019 Long-term application of organic fertilization causes the accumulation of antibiotic resistome in earthworm gut microbiota. ARGs, MGEs, pRDA
75  2019 Manipulating redox conditions to enhance in situ bioremediation of RDX in groundwater at a contaminated site. MWs, RDX, WG
76  2019 Metabarcoding for stomach-content analyses of Pygmy devil ray (Mobula kuhlii cf. eregoodootenkee): Comparing tissue and ethanol preservative-derived DNA. ---
77  2019 Metagenomic assessment of body surface bacterial communities of the sea urchin, Tripneustes gratilla. ---
78  2019 Metagenomic Characterization of Bacterial Communities on Ready-to-Eat Vegetables and Effects of Household Washing on their Diversity and Composition. RTE
79  2019 Metagenomic comparison of the rectal microbiota between rhesus macaques (Macaca mulatta) and cynomolgus macaques (Macaca fascicularis). LPS, PICRUSt
80  2019 Metagenomic data of fungal community in Kongsfjorden, Arctic using Illumina next generation sequencing. ITS, SRA
81  2019 Methanogenic Archaea dominate mature heartwood habitats of Eastern Cottonwood (Populus deltoides). ---
82  2019 Microbial assessments of soil with a 40-year history of reclaimed wastewater irrigation. ---
83  2019 Microbial characterisation of the edible grasshopper Ruspolia differens in raw condition after wild-harvesting in Uganda. ---
84  2019 Microbial Ecology of the Western Gull (Larus occidentalis). ACE
85  2019 Microbiota in non-flooded and flooded rice culms. ---
86  2019 Microorganism's adaptation of Crucian carp may closely relate to its living environments. ---
87  2019 Mycobiome Diversity in Traditionally Prepared Starters for Alcoholic Beverages in India by High-Throughput Sequencing Method. HTS
88  2019 Nasal Resistome Development in Infants With Cystic Fibrosis in the First Year of Life. CF
89  2019 Neutral Processes Drive Seasonal Assembly of the Skin Mycobiome. ---
90  2019 New insights from uncultivated genomes of the global human gut microbiome. ---
91  2019 Nitrification inhibitors effectively target N2 O-producing Nitrosospira spp. in tropical soil. AOB, AOB, DCD, NIs, WFPS
92  2019 Nitrogen- and phosphorus-starved Triticum aestivum show distinct belowground microbiome profiles. ---
93  2019 Overall Dietary Quality Relates to Gut Microbiota Diversity and Abundance. IDQ
94  2019 Patterns of bacterial and archaeal communities in sediments in response to dam construction and sewage discharge in Lhasa River. ---
95  2019 Performance and dynamic characteristics of microbial communities in multi-stage anaerobic reactors treating gibberellin wastewater. COD, IC, PCoA, UASB
96  2019 Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem. ITS2
97  2019 Phylogenetic diversity of sulfate-reducing bacteria of sediments of Chilika Lake, India, determined through analysis of the dissimilatory sulfite reductase (dsr AB) gene. SRB
98  2019 Polyphosphate-accumulating organisms in full-scale tropical wastewater treatment plants use diverse carbon sources. EBPR, GAOs, PAO, VFAs, WWTPs
99  2019 Potential pathogen communities in highly polluted river ecosystems: Geographical distribution and environmental influence. NCR
100  2019 Predicting clinical outcomes of cirrhosis patients with hepatic encephalopathy from the fecal microbiome. AHE, HE