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Abbreviation : SCA
Long Form : statistical coupling analysis
No. Year Title Co-occurring Abbreviation
2019 Spectral analysis of molecular dynamics simulations on PDZ: MD sectors. MD
2019 Statistical coupling analysis uncovers sites crucial for the proton transfer in laccase Lac15. ---
2018 Coevolution-based inference of amino acid interactions underlying protein function. DCS
2018 H/D exchange mass spectrometry and statistical coupling analysis reveal a role for allostery in a ferredoxin-dependent bifurcating transhydrogenase catalytic cycle. FBEB, Fd, HDX-MS, Nfn
2018 Statistical Coupling Analysis-Guided Library Design for the Discovery of Mutant Luciferases. ---
2017 A self-consistent structural perturbation approach for determining the magnitude and extent of allosteric coupling in proteins. ---
2017 An evolution-based strategy for engineering allosteric regulation. REACH
2017 Dependence of prevalence of contiguous pathways in proteins on structural complexity. ---
2017 Evolutionary Covariance Combined with Molecular Dynamics Predicts a Framework for Allostery in the MutS DNA Mismatch Repair Protein. MD, MMR
10  2016 Evolution-Based Functional Decomposition of Proteins. pySCA
11  2015 Protein sectors: statistical coupling analysis versus conservation. ---
12  2015 Structural mechanism for signal transduction in RXR nuclear receptor heterodimers. HDX, NMR, NRs, PPAR, RXR, TR
13  2013 A conserved interdomain communication pathway of pseudosymmetrically distributed residues affects substrate specificity of the fungal multidrug transporter Cdr1p. ABC, PDR
14  2013 Helices 2 and 3 are the initiation sites in the PrP(C) → PrP(SC) transition. ---
15  2013 Molecular dynamics simulations and statistical coupling analysis reveal functional coevolution network of oncogenic mutations in the CDKN2A-CDK6 complex. ---
16  2013 The Global Sequence Signature algorithm unveils a structural network surrounding heavy chain CDR3 loop in Camelidae variable domains. ---
17  2012 Directed evolution to re-adapt a co-evolved network within an enzyme. cat, GA, PA
18  2012 Identification of residues involved in water versus glycerol selectivity in aquaporins by differential residue pair co-evolution. AQPs, MIP, MSAs
19  2012 Interaction signatures stabilizing the NAD(P)-binding Rossmann fold: a structure network approach. ---
20  2011 Identification of distant co-evolving residues in antigen 85C from Mycobacterium tuberculosis using statistical coupling analysis of the esterase family proteins. ---
21  2011 Identification of functional motions in the adenylate kinase (ADK) protein family by computational hybrid approaches. ADK, MD, NMA, SCA.NMA
22  2010 Correlation analysis for protein evolutionary family based on amino acid position mutations and application in PDZ domain. CMCA, MSA
23  2010 Crystal structure and statistical coupling analysis of highly glycosylated peroxidase from royal palm tree (Roystonea regia). MES, RPTP
24  2010 Reciprocally coupled residues crucial for protein kinase Pak2 activity calculated by statistical coupling analysis. AID, PKA
25  2009 On the accuracy of inferring energetic coupling between distant sites in protein families from evolutionary imprints: illustrations using lattice model. DMC, MSA, SPM
26  2009 Systematic structural studies of iron superoxide dismutases from human parasites and a statistical coupling analysis of metal binding specificity. SODs
27  2008 An integrated system for studying residue coevolution in proteins. ELSC
28  2008 Coevolving residues of (beta/alpha)(8)-barrel proteins play roles in stabilizing active site architecture and coordinating protein dynamics. IGPS, MD
29  2006 Ligand recognition by vitamin D receptor: total alanine scanning mutational analysis of the residues lining the ligand binding pocket of vitamin D receptor. ASMA, hVDR, LBP, NRs
30  2006 Structure-based identification of small molecule binding sites using a free energy model. ---
31  2005 Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis. MD
32  2004 Structural determinants of allosteric ligand activation in RXR heterodimers. ---
33  2003 Allosteric determinants in guanine nucleotide-binding proteins. ---