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Abbreviation : SS
Long Form : secondary structure
No. Year Title Co-occurring Abbreviation
2019 Analysis and prediction of human acetylation using a cascade classifier based on support vector machine. AC, ASA, PCP, PSSM, RC
2019 StackSSSPred: A Stacking-Based Prediction of Supersecondary Structure from Sequence. SSS
2016 A balanced secondary structure predictor. GA
2016 Protein Secondary Structure Prediction Using Deep Convolutional Neural Fields. CNF, CRF
2016 RaptorX-Property: a web server for protein structure property prediction. ACC, AUC, DISO
2015 A Deep Learning Network Approach to ab initio Protein Secondary Structure Prediction. ---
2015 The structure of the genotype-phenotype map strongly constrains the evolution of non-coding RNA. GP, ncRNA
2014 Bindings of hMRP1 transmembrane peptides with dodecylphosphocholine and dodecyl-beta-d-maltoside micelles: a molecular dynamics simulation study. DDM, DPC
2014 SVM-PB-Pred: SVM based protein block prediction method using sequence profiles and secondary structures. DSSP
10  2014 VMD-SS: A graphical user interface plug-in to calculate the protein secondary structure in VMD program. PDB
11  2011 Critical assessment of high-throughput standalone methods for secondary structure prediction. ---
12  2011 Improved prediction of palmitoylation sites using PWMs and SVM. ASA, AUC, PWMs, SVM
13  2011 Improved sequence-based prediction of strand residues. ---
14  2011 Protein 8-class secondary structure prediction using conditional neural fields. CNFs
15  2009 Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature. AUC, OBV, PDB, RF
16  2009 PROCAIN: protein profile comparison with assisting information. HMMs, MSAs
17  2008 Genomic mid-range inhomogeneity correlates with an abundance of RNA secondary structures. MRI
18  2008 Prediction of protein functional residues from sequence by probability density estimation. RSA
19  2007 Cascaded bidirectional recurrent neural networks for protein secondary structure prediction. BRNN, PSS, SOV
20  2006 Pressure denaturation of apomyoglobin: a molecular dynamics simulation study. SAS
21  2005 Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks. CN, CRNs, RWCO
22  2004 Protein family comparison using statistical models and predicted structural information. ---
23  2002 Structure motif discovery and mining the PDB. PDB