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Abbreviation : TEs
Long Form : transposable elements
No. Year Title Co-occurring Abbreviation
2019 A re-annotation of the Anopheles darlingi mobilome. ---
2019 A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster. ---
2019 Active DNA Demethylation in Plants. BER
2019 An intriguing relationship between teleost Rex3 retroelement and environmental temperature. ---
2019 Anaphase-promoting complex/cyclosome regulates RdDM activity by degrading DMS3 in Arabidopsis. APC/C, Pol V, RdDM
2019 Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs. lncRNA
2019 Bioinformatic analysis of regulation of natural antisense transcripts by transposable elements in human mRNA. NATs
2019 Birth, School, Work, Death, and Resurrection: The Life Stages and Dynamics of Transposable Element Proliferation. ---
2019 CG Hypomethylation Leads to Complex Changes in DNA Methylation and Transpositional Burst of Diverse Transposable Elements in Callus Cultures of Rice. mCG
10  2019 Characterization of the satellitome in lower vascular plants: the case of the endangered fern Vandenboschia speciosa. satDNA
11  2019 Chromosome Mapping of H1 and H4 Histones in Parodontidae (Actinopterygii: Characiformes): Dispersed and/or Co-Opted Transposable Elements? ERV, ORF
12  2019 Comparative effect of allopolyploidy on transposable element composition and gene expression between Gossypium hirsutum and its two diploid progenitors. siRNAs
13  2019 Crosstalk between epigenetic silencing and infection bytobacco rattle virus in Arabidopsis. TRV
14  2019 Development of High-Density SNP Markers and Their Application in Evaluating Genetic Diversity and Population Structure in Elaeis guineensis. LD, SLAF-seq, SNPs
15  2019 DeviaTE: Assembly-free analysis and visualization of mobile genetic element composition. ---
16  2019 Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes. ---
17  2019 Diseases of the nERVous system: retrotransposon activity in neurodegenerative disease. ERVs, HERVs
18  2019 Distribution and Characteristics of Transposable Elements in the Mulberry Genome. ---
19  2019 Diversification of small RNA amplification mechanisms for targeting transposon-related sequences in ciliates. IESs
20  2019 Diversification of Transposable Elements in Arthropods and Its Impact on Genome Evolution. ArTEdb, LTR, TIRs
21  2019 Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects. ---
22  2019 DNA methylome analysis provides evidence that the expansion of the tea genome is linked to TE bursts. ---
23  2019 DNA transposon invasion and microsatellite accumulation guide W chromosome differentiation in a Neotropical fish genome. ---
24  2019 Does the Presence of Transposable Elements Impact the Epigenetic Environment of Human Duplicated Genes? ---
25  2019 Dynamic Interactions Between the Genome and an Endogenous Retrovirus: Tirant in Drosophila simulans Wild-Type Strains. ERVs
26  2019 Dynamic Patterns of Transcript Abundance of Transposable Element Families in Maize. ---
27  2019 Dynamic regulation of chromatin topology and transcription by inverted repeat-derived small RNAs in sunflower. Cots, IR
28  2019 Effects of assisted reproductive technologies on transposon regulation in the mouse pre-implanted embryo. ARTs
29  2019 Elimination of a Retrotransposon for Quenching Genome Instability in Modern Rice. LTR
30  2019 Endo-siRNAs regulate early embryonic development by inhibiting transcription of long terminal repeat sequence in pig†. dsRNA, endo-siRNA, ERVs, LTRs
31  2019 Endo-siRNAs repress expression of SINE1B during invitro maturation of porcine oocyte. endo-siRNAs, GV stage, IVM, KD, SINE1B
32  2019 Evidence of developmental escape from transcriptional gene silencing in MESSI retrotransposons. LTR
33  2019 Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. TF
34  2019 Expansion of a core regulon by transposable elements promotes Arabidopsis chemical diversity and pathogen defense. ICN
35  2019 Expansion of the fatty acyl reductase gene family shaped pheromone communication in Hymenoptera. FARs
36  2019 Fine-Grained Analysis of Spontaneous Mutation Spectrum and Frequency in Arabidopsis thaliana. MA, SNM
37  2019 Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells. ---
38  2019 Genome Size Evolution: Small Transposons with Large Consequences. ---
39  2019 Genome Size Reversely Correlates With Host Plant Range in Helicoverpa Species. ---
40  2019 Genome-wide identification and analysis of the WUSCHEL-related homeobox (WOX) gene family in allotetraploid Brassica napus reveals changes in WOX genes during polyploidization. HB, WGT, WOX
41  2019 Genome-Wide Identification of Microsatellites and Transposable Elements in the Dromedary Camel Genome Using Whole-Genome Sequencing Data. ERVK, LTR, MAS, SSRs
42  2019 Genome-wide variation in nucleotides and retrotransposons in alpine populations of Arabis alpina (Brassicaceae). SNPs
43  2019 Genomic Plasticity Mediated by Transposable Elements in the Plant Pathogenic Fungus Colletotrichum higginsianum. Ch
44  2019 Giant Transposons in Eukaryotes: Is Bigger Better? ---
45  2019 Global Methylomic and Transcriptomic Analyses Reveal the Broad Participation of DNA Methylation in Daily Gene Expression Regulation of Populus trichocarpa. DMRs
46  2019 Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot. HT
47  2019 Heterochromatin evolution in Arachis investigated through genome-wide analysis of repetitive DNA. satDNAs
48  2019 Heterogeneity of transposon expression and activation of the repressive network in human fetal germ cells. ---
49  2019 Heterogeneous transposable elements as silencers, enhancers and targets of meiotic recombination. ---
50  2019 Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs. hESCs, KRAB
51  2019 Host-transposon interactions: conflict, cooperation, and cooption. ---
52  2019 Impact of polymorphic transposable elements on linkage disequilibrium along chromosomes. LD
53  2019 Impact of transposable elements in the architecture of genes of the human parasite Schistosoma mansoni. ---
54  2019 In silico determination of transposon-derived miRNAs and targets in Aegilops species. GO, KEGG
55  2019 Insertion of a chimeric retrotransposon sequence in mouse Axin1 locus causes metastable kinky tail phenotype. cL1
56  2019 Investigation of Hanwoo-specific structural variations using whole-genome sequencing data. SVs
57  2019 Isolation and Characterization of Interspersed Repeated Sequences in the Common Lizard, Zootoca vivipara, and Their Conservation in Squamata. ---
58  2019 LINE-2 transposable elements are a source of functional human microRNAs and target sites. miRNAs
59  2019 LIONS: analysis suite for detecting and quantifying transposable element initiated transcription from RNA-seq. ---
60  2019 Long-read direct RNA sequencing by 5'-Cap capturing reveals the impact of Piwi on the widespread exonization of transposable elements in locusts. ---
61  2019 Maelstrom regulates spermatogenesis of the silkworm, Bombyx mori. MAEL
62  2019 Massive Changes of Genome Size Driven by Expansions of Non-autonomous Transposable Elements. SINEs
63  2019 Monitoring the interplay between transposable element families and DNA methylation in maize. ---
64  2019 Natural depletion of histone H1 in sex cells causes DNA demethylation, heterochromatin decondensation and transposon activation. VC
65  2019 Non-coding RNA Transcription in Tetrahymena Meiotic Nuclei Requires Dedicated Mediator Complex-Associated Proteins. MED, MIC, ncRNA
66  2019 Novel Insights into Plant Genome Evolution and Adaptation as Revealed through Transposable Elements and Non-Coding RNAs in Conifers. ---
67  2019 Nuclear RNA export factor variant initiates piRNA-guided co-transcriptional silencing. NXF, Panx, piRNA
68  2019 On the Importance to Acknowledge Transposable Elements in Epigenomic Analyses. ---
69  2019 On the Population Dynamics of Junk: A Review on the Population Genomics of Transposable Elements. SNPs
70  2019 Patterns of transposable element variation and clinality in Drosophila. ---
71  2019 Population Genome Sequencing of the Scab Fungal Species Venturia inaequalis, Venturia pirina, Venturia aucupariae and Venturia asperata. SNP
72  2019 Population-specific dynamics and selection patterns of transposable element insertions in European natural populations. DrosEU
73  2019 Prevalence of plasmid-borne benzalkonium chloride resistance cassette bcrABC and cadmium resistance cadA genes in nonpathogenic Listeria spp. isolated from food and food-processing environments. BC
74  2019 Rapid evolution of piRNA pathway and its transposon targets in Japanese flounder (Paralichthys olivaceus). piRNA
75  2019 Regulation of transposable elements by DNA modifications. 5mC
76  2019 RepetDB: a unified resource for transposable element references. ---
77  2019 Retrotransposons in Plant Genomes: Structure, Identification, and Classification through Bioinformatics and Machine Learning. ---
78  2019 RNAi-dependent Polycomb repression controls transposable elements in Tetrahymena. IESs, ncRNA
79  2019 Simultaneous TE Analysis of 19 Heliconiine Butterflies Yields Novel Insights into Rapid TE-Based Genome Diversification and Multiple SINE Births and Deaths. ---
80  2019 Single-cell CAS-seq reveals a class of short PIWI-interacting RNAs in human oocytes. os-piRNAs, piRNAs
81  2019 SQuIRE reveals locus-specific regulation of interspersed repeat expression. SQuIRE
82  2019 Stress-driven transposable element de-repression dynamics and virulence evolution in a fungal pathogen. ---
83  2019 T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data. ---
84  2019 Targeted deletion of rice retrotransposon Tos17 via CRISPR/Cas9. LTR
85  2019 TE studies in Japan: the fourth Japanese meeting on host-transposon interactions. NIG
86  2019 TERAD: Extraction of transposable element composition from RADseq data. ddRADseq, RAD-seq
87  2019 The first draft genomes of the ant Formica exsecta, and its Wolbachia endosymbiont reveal extensive gene transfer from endosymbiont to host. HGTs, HGTs
88  2019 The Genome of Blue-Capped Cordon-Bleu Uncovers Hidden Diversity of LTR Retrotransposons in Zebra Finch. LTR, MY, MYA
89  2019 The genomic determinants of adaptive evolution in a fungal pathogen. ---
90  2019 The Hsp70 chaperone is a major player in stress-induced transposable element activation. piRNAs
91  2019 The impact of transposable element activity on therapeutically relevant human stem cells. CNVs
92  2019 The impact of transposable elements in adaptive evolution. ---
93  2019 The interactome of KRAB zinc finger proteins reveals the evolutionary history of their functional diversification. KRAB
94  2019 The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.). FISH, LTR, REs
95  2019 The NRPD1 N-terminus contains a Pol IV-specific motif that is critical for genome surveillance in Arabidopsis. Pol IV, siRNAs, WT
96  2019 The nucleolar transcriptome regulates Piwi shuttling between the nucleolus and the nucleoplasm. OSC, pol
97  2019 The RNA Helicase BELLE Is Involved in Circadian Rhythmicity and in Transposons Regulation in Drosophila melanogaster. ---
98  2019 The RNA-binding protein ILF3 binds to transposable element sequences in SINEUP lncRNAs. Alu, AS, ED, ILF3, lncRNA, SINE, Uch-L1
99  2019 The Role of Gene Conversion between Transposable Elements in Rewiring Regulatory Networks. ---
100  2019 The role of transposable elements in the evolution of aluminium resistance in plants. Al, OAs