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Abbreviation : UMIs
Long Form : unique molecular identifiers
No. Year Title Co-occurring Abbreviation
2019 amplimap: a versatile tool to process and analyze targeted NGS data. NGS
2019 Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods. miRNA
2019 Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model. GLM-PCA, scRNA-Seq
2019 High efficiency error suppression for accurate detection of low-frequency variants. NGS
2019 How to design a single-cell RNA-sequencing experiment: pitfalls, challenges and perspectives. scRNA-seq
2019 Measurable residual disease monitoring for patients with acute myeloid leukemia following hematopoietic cell transplantation using error corrected hybrid capture next generation sequencing. AML, CHIP, HCT, MRD, NGS, STR
2019 smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers. ---
2019 Studying Cancer Heterogeneity by Single-Cell RNA Sequencing. scRNA-seq
2018 AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing. ---
10  2018 Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers. PCR
11  2018 Rapid and highly-specific generation of targeted DNA sequencing libraries enabled by linking capture probes with universal primers. cfDNA, FFPE, LTC, NGS
12  2018 Single-cell RNA Sequencing of Fluorescently Labeled Mouse Neurons Using Manual Sorting and Double In Vitro Transcription with Absolute Counts Sequencing (DIVA-Seq). DIVA-Seq, FACS
13  2018 TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers. NGS
14  2018 Unbiased quantification of immunoglobulin diversity at the DNA level with VDJ-seq. ---
15  2018 zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs. BCs, scRNA-seq
16  2017 Batch effects and the effective design of single-cell gene expression studies. iPSC, scRNA-seq
17  2017 Comparative Analysis of Single-Cell RNA Sequencing Methods. scRNA-seq
18  2017 CRISPR-UMI: single-cell lineage tracing of pooled CRISPR-Cas9 screens. sgRNAs
19  2017 CRISPR/Cas9 screening using unique molecular identifiers. RSLs
20  2017 Gene length and detection bias in single cell RNA sequencing protocols. mESCs, scRNA-seq
21  2017 MAGERI: Computational pipeline for molecular-barcoded targeted resequencing. ---
22  2017 Single-cell mRNA isoform diversity in the mouse brain. ---
23  2017 UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy. ---
24  2016 High-quality full-length immunoglobulin profiling with unique molecular barcoding. Ig
25  2016 PeakXus: comprehensive transcription factor binding site discovery from ChIP-Nexus and ChIP-Exo experiments. SNP, TF
26  2016 The impact of amplification on differential expression analyses by RNA-seq. FDR
27  2016 TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens. ---
28  2016 UMI-4C for quantitative and targeted chromosomal contact profiling. ---
29  2015 Q-RRBS: a quantitative reduced representation bisulfite sequencing method for single-cell methylome analyses. Q-RRBS, RRBS
30  2011 Counting absolute numbers of molecules using unique molecular identifiers. ---