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Abbreviation : rep-PCR
Long Form : repetitive extragenic palindromic PCR
No. Year Title Co-occurring Abbreviation
2020 Higher accuracy of genotypic identification compared to phenotyping in the diagnosis of coagulase-negative staphylococcus infection in orthopedic surgery. CoNS, NPV, PPV
2020 Phase variation in latB associated with a fatal Pasteurella multocida outbreak in captive squirrel gliders. LPS, ST, WGS, Zoo A
2019 Characterization of Phenotypic and Genotypic Diversity of Stenotrophomonas maltophilia Strains Isolated From Selected Hospitals in Iran. CLSI, MLST, TMP-SMX
2019 Epidemiological investigation of an Acinetobacter baumannii outbreak using core genome multilocus sequence typing. cgMLST, CRAB, ICU, MLST, WGS
2019 Experimental Infection of Mice with Veronaea botryosa as a Model for Human Phaeohyphomycosis. ---
2019 Genetic Relationship, Virulence Factors, Drug Resistance Profile and Biofilm Formation Ability of Vibrio parahaemolyticus Isolated From Mussel. FESEM, MARI, PCR, TEM
2019 Genomic polymorphism of Trifolium repens root nodule symbionts from heavy metal-abundant 100-year-old waste heap in southern Poland. ---
2019 Polyclonal gut colonization with extended-spectrum cephalosporin- and/or colistin-resistant Enterobacteriaceae: a normal status for hotel employees on the island of Zanzibar, Tanzania. CST-R, ESC-R, MICs
2019 Rapid and Simple Universal Escherichia coli Genotyping Method Based on Multiple-Locus Variable-Number Tandem-Repeat Analysis Using Single-Tube Multiplex PCR and Standard Gel Electrophoresis. ECOR, MLST, PFGE, ST131, STEC, VNTR, WGS
10  2018 Comparison of serological and molecular typing methods for epidemiological investigation of Tenacibaculum species pathogenic for fish. ERIC-PCR
11  2018 Dissemination of blaOXA-23, blaOXA-24, blaOXA-58, and blaNDM-1 Genes of Acinetobacter baumannii Isolates from Four Tertiary Hospitals in Thailand. CRAB, NR-AB, XDRAB
12  2018 Diversity of Class 1 Integrons, and Disruption of carO and dacD by Insertion Sequences Among Acinetobacter baumannii Isolates in Tehran, Iran. ---
13  2018 Emergence and characterization of nosocomial multidrug-resistant and extensively drug-resistant Acinetobacter baumannii isolates in Tehran, Iran. CRAB, ICU, MDR, XDR
14  2018 Impact of the ST101 clone on fatality among patients with colistin-resistant Klebsiella pneumoniae infection. ColR-Kp
15  2018 Microbial infection pattern, pathogenic features and resistance mechanism of carbapenem-resistant Gram negative bacilli during long-term hospitalization. GNB, MLST
16  2018 Transmission patterns of Streptococcus mutans demonstrated by a combined rep-PCR and MLST approach. MLST, ST
17  2017 Association Between Early Childhood Caries and Colonization with Streptococcus mutans Genotypes From Mothers. ECC, GT, M-C
18  2017 Bacterial ecology of artisanal Minas cheeses assessed by culture-dependent and -independent methods. LAB
19  2017 Distribution of the bla OXA , bla VEB-1 , and bla GES-1 genes and resistance patterns of ESBL-producing Pseudomonas aeruginosa isolated from hospitals in Tehran and Qazvin, Iran. ESBLs
20  2017 Elevated prevalence of multidrug-resistant Acinetobacter baumannii with extensive genetic diversity in the largest burn centre of northeast Iran. MDR
21  2017 Fluoroquinolone, Macrolide, and Ketolide Resistance in Haemophilus parainfluenzae from South Africa. PCR
22  2017 Molecular characterization of KPC-producing Klebsiella pneumoniae isolated from patients in a Public Hospital in Caracas, Venezuela. KPC, MLST, ST
23  2017 Molecular Characterization of Salmonella Genomic Island 1 in Proteus mirabilis Isolates from Chungcheong Province, Korea. MDR, SGI1
24  2017 Molecular epidemiology of KPC-producing Klebsiella pneumoniae isolated from patients in two public hospitals in Carabobo and Zulia states, Venezuela. KPC, MLST, ST
25  2016 A cluster of KPC-2 and VIM-2-producing Klebsiella pneumoniae ST833 isolates from the pediatric service of a Venezuelan Hospital. MLST, QAC
26  2016 Antimicrobial resistance pattern and genetic correlation in Enterococcus faecium isolated from healthy volunteers. CT, PFGE, ST, VRE
27  2016 Clonal analysis of Aerococcus urinae isolates by using the repetitive extragenic palindromic PCR (rep-PCR). ---
28  2016 Diversity, community structure, and bioremediation potential of mercury-resistant marine bacteria of estuarine and coastal environments of Odisha, India. ERIC, FTIR, MRMB
29  2016 Genetic Diversity and Evidence for Transmission of Streptococcus mutans by DiversiLab rep-PCR. ---
30  2016 Genetic Relatedness of Salmonella Serovars Isolated from Catfish (Clarias gariepinus) and Tilapia (Tilapia mossambica) Obtained from Wet Markets and Ponds in Penang, Malaysia. PFGE, RAPD-PCR
31  2015 Association of blaOXA-23 and bap with the persistence of Acinetobacter baumannii within a major healthcare system. DMC
32  2015 Characterisation of extended-spectrum beta-lactamases among Klebsiella pneumoniae isolates causing bacteraemia and urinary tract infection in Mozambique. ESBL, MLST, PFGE
33  2015 Emergence of carbapenem non-susceptible multidrug resistant Acinetobacter baumannii strains of clonal complexes 103(B) and 92(B) harboring OXA-type carbapenemases and metallo-beta-lactamases in Southern India. CC, MBLs, MLST
34  2015 Field and experimental evidence of Vibrio parahaemolyticus as the causative agent of acute hepatopancreatic necrosis disease of cultured shrimp (Litopenaeus vannamei) in Northwestern Mexico. AHPND
35  2015 Genetic relatedness of commensal Escherichia coli from nursery pigs in intensive pig production in Denmark and molecular characterization of genetically different strains. ST
36  2015 Impact of therapy and strain type on outcomes in urinary tract infections caused by carbapenem-resistant Klebsiella pneumoniae. aOR, CRKP, NHSN, UTI
37  2015 In Vivo Evolution of CMY-2 to CMY-33 beta-Lactamase in Escherichia coli Sequence Type 131: Characterization of an Acquired Extended-Spectrum AmpC Conferring Resistance to Cefepime. CMY-2-Ec, CMY-33-Ec, ESAC, ESBL, pAmpC, ST131
38  2015 New hosts and genetic diversity of Flavobacterium columnare isolated from Brazilian native species and Nile tilapia. ---
39  2015 Prevalence of Acinetobacter baumannii harboring ISAba1/bla OXA-23-like family in a burn center. CRAB
40  2015 Utility of whole-cell repetitive extragenic palindromic sequence-based PCR (REP-PCR) for the rapid detection of nosocomial outbreaks of multidrug resistant organisms: experience at a tertiary care center in North India. ICUs, MDR, PSICU
41  2014 A multicentre cohort study on colonization and infection with ESBL-producing Enterobacteriaceae in high-risk patients with haematological malignancies. BSIs, ESBL-E
42  2014 Analysis of thermophilic fungal populations during phase II of composting for the cultivation of Agaricus subrufescens. DGGE
43  2014 Antibiotic resistance and OXA-type carbapenemases-encoding genes in airborne Acinetobacter baumannii isolated from burn wards. A. baumannii
44  2014 Antibiotic resistance and phylogenetic characterization of Acinetobacter baumannii strains isolated from commercial raw meat in Switzerland. CCs, MDR, STs
45  2014 Application of different molecular techniques for characterization of catalase-positive cocci isolated from sucuk. GCC, HRM, RAPD-PCR
46  2014 Clonal relationship and differentiation among Mycobacterium abscessus isolates as determined using the semiautomated repetitive extragenic palindromic sequence PCR-based DiversiLab system. DL, MLST
47  2014 Molecular epidemiology of Acinetobacter baumannii in Iran: endemic and epidemic spread of multiresistant isolates. SGs, STs
48  2014 Shiga-toxin genes and genetic diversity of Escherichia coli isolated from pasteurized cow milk in Brazil. ERIC-PCR
49  2014 Surveillance of carbapenem-resistant Klebsiella pneumoniae: tracking molecular epidemiology and outcomes through a regional network. CI, CR, OR
50  2014 Thermolongibacillus altinsuensis gen. nov., sp. nov. and Thermolongibacillus kozakliensis sp. nov., aerobic, thermophilic, long bacilli isolated from hot springs. ---
51  2013 Characterization of fecal extended-spectrum-beta-lactamase-producing Escherichia coli in a remote community during a long time period. ESBL-E
52  2013 Does virulence assessment of Vibrio anguillarum using sea bass (Dicentrarchus labrax) larvae correspond with genotypic and phenotypic characterization? RAPD
53  2013 Dynamics and diversity of Escherichia coli in animals and system management of the manure on a commercial farrow-to-finish pig farm. ---
54  2013 Emergence of extensively drug-resistant Haemophilus parainfluenzae in Switzerland. XDR
55  2013 Molecular characterization of Streptococcus agalactiae strains isolated from fishes in Malaysia. RAPD
56  2013 Population structure of clinical and environmental Vibrio parahaemolyticus from the Pacific Northwest coast of the United States. MLST
57  2013 Prevalence and genetic characterization of Vibrio vulnificus in raw seafood and seawater in Malaysia. ERIC-PCR
58  2013 Retraction note to: Repetitive extragenic palindromic PCR (REP-PCR) as a method used for bulking process detection in activated sludge. ---
59  2013 Study of the carbapenem resistance mechanisms in clinical isolates of Acinetobacter baumannii: comparison of burn and non-burn strains. ---
60  2013 [Identification of lactic acid bacteria in commercial yogurt and their antibiotic resistance]. ARGs, LAB
61  2012 Discrimination of probiotic Lactobacillus strains for poultry by repetitive sequenced-based PCR fingerprinting. ERIC-PCR
62  2012 Identification of dairy lactic acid bacteria by tRNAAla-23S rDNA-RFLP. LAB, RAPD
63  2012 Isolation and characterisation of a bacterial strain degrading the herbicide sulcotrione from an agricultural soil. ARDRA
64  2012 Longitudinal epidemiology of multidrug-resistant (MDR) Acinetobacter species in a tertiary care hospital. MDR
65  2011 Acinetobacter baumannii isolates from pets and horses in Switzerland: molecular characterization and clinical data. MLST, ST
66  2011 An investigation of the subtype diversity of clinical isolates of Irish Clostridium difficile ribotypes 027 and 078 by repetitive-extragenic palindromic PCR. ---
67  2011 Intraspecific genetic variability of Edwardsiella tarda strains from cultured turbot. ERIC-PCR, PCR, RAPD
68  2011 Outcomes and genetic relatedness of carbapenem-resistant enterobacteriaceae at Detroit medical center. CRE, OR, PCR
69  2011 Repetitive extragenic palindromic PCR (REP-PCR) as a method used for bulking process detection in activated sludge. ---
70  2011 Surface microbial consortia from Livarot, a French smear-ripened cheese. ---
71  2011 The effect of gamma-Fe2O3 nanoparticles on Escherichia coli genome. E. coli, FCM, MNPs, TEM
72  2010 Characterization of strains unlike Mesorhizobium loti that nodulate lotus spp. in saline soils of Granada, Spain. ---
73  2010 Distribution and diversity of Escherichia coli populations in the South Nation River drainage basin, eastern Ontario, Canada. ---
74  2010 Diversity of Escherichia coli strains producing extended-spectrum beta-lactamases in Spain: second nationwide study. ESBL
75  2010 Evaluation of repetitive extragenic palindromic-polymerase chain reaction and denatured gradient gel electrophoresis in identifying Salmonella serotypes isolated from processed turkeys. DGGE
76  2010 Molecular characterization of lactic acid bacteria recovered from natural fermentation of beet root and carrot Kanji. ARDRA, LAB
77  2010 Molecular intraspecific characterization of Photobacterium damselae ssp. damselae strains affecting cultured marine fish. ERIC-PCR, RAPD
78  2010 Repetitive extragenic palindromic PCR (REP-PCR) as an alternative method for detection of bulking in activated sludge. IOD
79  2010 Repetitive extragenic palindromic PCR for study of Streptococcus mutans diversity and transmission in human populations. PFGE
80  2010 Structure and diversity of arsenic resistant bacteria in an old tin mine area of Thailand. ars, DGGE
81  2010 [Analysis of acquired resistance genes in Stenotrophomonas maltophilia]. TMP/SMX
82  2009 Antibiotic resistance determinants in nosocomial strains of multidrug-resistant Acinetobacter baumannii. MDR
83  2009 Antifungal activity of strains of lactic acid bacteria isolated from a semolina ecosystem against Penicillium roqueforti, Aspergillus niger and Endomyces fibuliger contaminating bakery products. FPs, LAB
84  2009 Application of a clustering-based peak alignment algorithm to analyze various DNA fingerprinting data. ARDRA, DGGE, RISA
85  2009 Genetic characterization of Streptococcus phocae strains isolated from Atlantic salmon, Salmo salar L., in Chile. ERIC-PCR, PFGE, RAPD
86  2009 REP-PCR tracking of the origin and spread of airborne Staphylococcus aureus in and around chicken house. ---
87  2009 Source identification of airborne Escherichia coli of swine house surroundings using ERIC-PCR and REP-PCR. ERIC-PCR, RCS
88  2008 Comparison of pulsed-field gel electrophoresis and three rep-PCR methods for evaluating the genetic relatedness of Stenotrophomonas maltophilia isolates. ERIC-PCR, PFGE
89  2008 Genotyping of different Pseudomonas aeruginosa morphotypes arising from the lower respiratory tract of a patient taken to an Intensive Care Unit. FAFLP, ICU
90  2007 Efficacy of enterocin AS-48 against bacilli in ready-to-eat vegetable soups and purees. ---
91  2007 Evaluation of different DNA-based fingerprinting methods for typing Photobacterium damselae ssp. piscicida. ERIC-PCR, RAPD-PCR
92  2007 Genetic relatedness of Escherichia coli isolates in interstitial water from a Lake Huron (Canada) beach. ---
93  2007 Temporal dynamics and impact of manure storage on antibiotic resistance patterns and population structure of Escherichia coli isolates from a commercial swine farm. ---
94  2006 Bacillus endospores isolated from granite: close molecular relationships to globally distributed Bacillus spp. from endolithic and extreme environments. ---
95  2006 Bacterial Canker Caused by Clavibacter michiganensis subsp. michiganensis on Tomato in the Baja California Peninsula of Mexico. PCR, SCM
96  2006 Campylobacter spp. subtype analysis using gel-based repetitive extragenic palindromic-PCR discriminates in parallel fashion to flaA short variable region DNA sequence analysis. SVR
97  2006 Genetic distinctions among clinical and environmental strains of Vibrio vulnificus. ---
98  2006 Genetic relatedness between Listeria monocytogenes isolates from seafood and humans using PFGE and REP-PCR. PFGE
99  2006 REP-PCR analysis of Pasteurella multocida isolates from wild and domestic animals in India. ---
100  2005 Application of molecular methods to demonstrate species and strain evolution of acetic acid bacteria population during wine production. ERIC-PCR, RFLP