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Abbreviation : rep-PCR
Long Form : repetitive sequence-based polymerase chain reaction
No. Year Title Co-occurring Abbreviation
2020 Genotyping and plant-derived glycan utilization analysis of Bifidobacterium strains from mother-infant pairs. B. bifidum, B. breve, B. longum, B. pseudolongum, B.pseudocatenulatum
2020 Isolation, identification, and selection of strains as candidate probiotics and starters for fermentation of Swedish legumes. BSH, GIT, LAB, MALDI-TOF MS
2020 Occurrence and Identification of Pectobacterium carotovorum subsp. brasiliensis and Dickeya dianthicola Causing Blackleg in some Potato Fields in Serbia. MLSA
2020 Selecting rep-PCR markers to source track fecal contamination in Laguna Lake, Philippines. ARCC, MST
2019 Antibiotic and quaternary ammonium compound resistance in Escherichia coli from calves at the beginning of the -fattening period in Switzerland (2017). PCR, QAC
2019 Evaluation of Methicillin-Resistant Staphylococcus aureus Carriage and High Livestock Production Areas in North Carolina through Active Case Finding at a Tertiary Care Hospital. MLST, MRSA, NC, NM-MRSA
2019 Genotypic Classification of Staphylococcus aureus and Bacillus cereus from Korean Slaughterhouses Using Semiautomated Repetitive Sequence-Based Polymerase Chain Reaction. CCARM, KCCM
2019 High acquisition rate of extended-spectrum beta-lactamase-producing Enterobacteriaceae among French military personnel on mission abroad, without evidence of inter-individual transmission. ESBL-E, SNP, WGS
2019 High genetic diversity of Vibrio parahaemolyticus isolated from tidal water and mud of southern coast of South Korea. ---
10  2018 Coagulase-Negative Staphylococci Isolated from Human Bloodstream Infections Showed Multidrug Resistance Profile. CNS, SCCmec
11  2018 Rapid monitoring of vancomycin-resistant Enterococcus faecium in hospital departments by repetitive element palindromic polymerase chain reaction. MLST, VRE
12  2018 Severe infections caused by multidrug-resistant non-fermentative bacilli in southern Poland. BSIs, ICUs, MDR, MDROs, PDR, XDR
13  2018 Taxonomic Repositioning of Xanthomonas campestris pv. viticola (Nayudu 1972) Dye 1978 as Xanthomonas citri pv. viticola (Nayudu 1972) Dye 1978 comb. nov. and Emendation of the Description of Xanthomonas citri pv. anacardii to Include Pigmented Isolates Pathogenic to Cashew Plant. ANI, MLSA, TETRA
14  2017 An Outbreak of Burkholderia cepacia Complex Infections Associated with Contaminated Liquid Docusate. CF
15  2017 Characterization of Molecular Identity and Pathogenicity of Rice Blast Fungus in Hunan Province of China. Avr, CDS, ML
16  2017 Distribution and Molecular Characterization of Campylobacter Species at Different Processing Stages in Two Poultry Processing Plants. CFUs
17  2017 Diversity of Serratia marcescens Strains Associated with Cucurbit Yellow Vine Disease in Georgia. CYVD, MLSA
18  2017 Molecular characterization and genetic relatedness of clinically Acinetobacter baumanii isolates conferring increased resistance to the first and second generations of tetracyclines in Iran. BMD, MIC
19  2016 Comparative Fingerprinting of the Human Microbiota in Diabetes and Cardiovascular Disease. ---
20  2016 Comparison of Whole-Genome Sequencing and Molecular-Epidemiological Techniques for Clostridium difficile Strain Typing. PFGE
21  2016 Prevalence of Major Methicillin-Resistant Staphylococcus aureus Clones in Korea Between 2001 and 2008. CC, DL, MLST, MRSA, SCCmec
22  2016 Prevalence, Seasonal Occurrence, and Antimicrobial Resistance of Salmonella spp. Isolates Recovered from Chicken Carcasses Sampled at Major Poultry Processing Plants of South Korea. ESBL
23  2016 Prolonged outbreak of clonal MDR Pseudomonas aeruginosa on an intensive care unit: contaminated sinks and contamination of ultra-filtrate bags as possible route of transmission? ICU, OR
24  2016 Selection of strains for shiitake production in axenic substrate. ---
25  2016 The clinical and molecular epidemiology of pre-transplant vancomycin-resistant enterococci colonization among liver transplant recipients. CI, VRE
26  2016 Water Sources in a Zoological Park Harbor Genetically Diverse Strains of Clostridium Perfringens Type A with Decreased Susceptibility to Metronidazole. ---
27  2015 Assessment of two multilocus sequence typing (MLST) schemes available for Streptococcus mutans. MLST, ST
28  2015 Could the DiversiLab semi-automated repetitive-sequence-based PCR be an acceptable technique for typing isolates of Pseudomonas aeruginosa? An answer from our experience and a review of the literature. DL, PFGE
29  2015 Evaluation of repetitive element polymerase chain reaction for surveillance of methicillin-resistant Staphylococcus aureus at a large academic medical center and community hospitals. DL, MRSA, PFGE
30  2015 First Report of Bacterial Blight of Crucifers Caused by Pseudomonas cannabina pv. alisalensis in Minnesota on Arugula (Eruca vesicaria subsp. sativa). KMB
31  2015 Genetic relatedness of clinical and environmental Acinetobacter baumanii isolates from an intensive care unit outbreak. ICU
32  2015 Investigation of clonal relationships of K. pneumoniae isolates from neonatal intensive care units by PFGE and rep-PCR. DL, NICU, PFGE
33  2015 Investigation of the relationship between virulence factors and genotype of Candida spp. isolated from blood cultures. NAC
34  2014 Bacteroides isolated from four mammalian hosts lack host-specific 16S rRNA gene phylogeny and carbon and nitrogen utilization patterns. ---
35  2014 Clonal comparison of Acinetobacter strains isolated from intensive care patients and the intensive care unit environment. ICUs
36  2014 Diversity of Dickeya Strains Collected from Pineapple Plants and Irrigation Water in Hawaii. mAbs
37  2014 Emergence of extended-spectrum beta-lactamase-producing Escherichia coli in catheter-associated urinary tract infection in neurogenic bladder patients. CAUTI, ESBL
38  2014 First description of OXA-48-producing Escherichia coli and the pandemic clone ST131 from patients hospitalised at a military hospital in Algeria. ESBL, MLST, ST
39  2014 French regional surveillance program of carbapenemase-producing Gram-negative bacilli: results from a 2-year period. CPE, CRGNB, MLST
40  2014 Pseudo-outbreak of Klebsiella oxytoca spontaneous bacterial peritonitis attributed to contamination of multidose vials of culture medium supplement. ---
41  2013 A Pseudomonas syringae diversity survey reveals a differentiated phylotype of the pathovar syringae associated with the mango host and mangotoxin production. BAN, RAPD-PCR
42  2013 Comparative genotyping of Streptococcus mutans by repetitive extragenic palindromic polymerase chain reaction and multilocus sequence typing. GG, MLST
43  2013 Genetic and virulence variability among Erwinia tracheiphila strains recovered from different cucurbit hosts. DAI
44  2013 Molecular typing of Paenibacillus larvae strains isolated from Bulgarian apiaries based on repetitive element polymerase chain reaction (Rep-PCR). P. larvae
45  2013 Strains of Pseudomonas syringae pv. syringae from pea are phylogenetically and pathogenically diverse. MLST
46  2013 The relationship between the new taxonomy of Streptococcus bovis and its clonality to colon cancer, endocarditis, and biliary disease. MIC, PCR-RFLP
47  2013 [Diversity of culturable filamentous bacteria in the activated sludge from A2O wastewater treatment process]. ---
48  2012 Bacterial Leaf Spot of Radicchio (Cichorium intybus) is caused by Xanthomonas hortorum. MLST
49  2012 Discrimination of probiotic Lactobacillus strains for poultry by repetitive sequenced-based PCR fingerprinting. ERIC-PCR
50  2012 Genetic diversity among Curtobacterium flaccumfaciens pv. flaccumfaciens populations in the American high plains. AFLP, PFGE
51  2012 Identification of a novel Acinetobacter baumannii clone in a US hospital outbreak by multilocus polymerase chain reaction/electrospray-ionization mass spectrometry. BICU, PFGE
52  2012 Molecular epidemiology of Enterococcus sp. isolated in a university hospital in Algeria. CC, MLST, ST, VRE
53  2012 Outbreak analysis and typing of MRSA isolates by automated repetitive-sequence-based PCR in a region with multiple strain types causing epidemics. MRSA, PFGE
54  2012 Pathogenic and genetic diversity of Xanthomonas translucens pv. undulosa in North Dakota. BLS, IS
55  2012 Pseudomonas aeruginosa respiratory tract infections associated with contaminated ultrasound gel used for transesophageal echocardiography - Michigan, December 2011-January 2012. BHS, FDA, ICU, NHSN
56  2012 Raman spectroscopic analysis of the clonal and horizontal spread of CTX-M-15-producing Klebsiella pneumoniae in a neonatal intensive care unit. ESBL, NICUs
57  2012 Use of Escherichia coli BOX-PCR fingerprints to identify sources of fecal contamination of water bodies in the State of Sao Paulo, Brazil. BST
58  2011 Analysis of bacterial community in bulking sludge using culture-dependent and -independent approaches. ---
59  2011 Analysis of mechanisms involved in reduced susceptibility to ciprofloxacin in Salmonella enterica serotypes Typhi and Paratyphi A isolates from travellers to Southeast Asia. MICs, QRDR
60  2011 Differentiation of banding patterns between Streptococcus mutans and Streptococcus sobrinus isolates in rep-PCR using ERIC primer. ---
61  2011 Discrimination of Scedosporium prolificans against Pseudallescheria boydii and Scedosporium apiospermum by semiautomated repetitive sequence-based PCR. ---
62  2011 Endemic Acinetobacter baumannii in a New York hospital. MDR
63  2011 Evaluation of MALDI-TOF MS as a tool for high-throughput dereplication. MALDI-TOF MS
64  2011 Genetic diversity of plaque mutans streptococci with rep-PCR. MS
65  2011 Molecular and epidemiological analysis of nosocomial carbapenem-resistant Klebsiella spp. using repetitive extragenic palindromic-polymerase chain reaction and matrix-assisted laser desorption/ionization-time of flight. ESBL, MALDI-TOF
66  2011 Orally administered colistin leads to colistin-resistant intestinal flora and fails to prevent faecal colonisation with extended-spectrum beta-lactamase-producing enterobacteria in hospitalised newborns. ESBL-E
67  2011 Polyphasic Characterization of Pigmented Strains of Xanthomonas Pathogenic to Cashew Trees. ---
68  2011 [Genotyping of nosocomial methicillin-resistant Staphylococcus aureus strains isolated from clinical specimens by rep-PCR]. ICU, MRSA
69  2010 Association of mycobacteria in recirculating aquaculture systems and mycobacterial disease in fish. ---
70  2010 Detection of strain variation in isolates of Rhodococcus equi from an affected foal using repetitive sequence-based polymerase chain reaction. LNs
71  2010 Interstrain variability in the virulence of Aspergillus fumigatus and Aspergillus terreus in a Toll-deficient Drosophila fly model of invasive aspergillosis. ---
72  2010 Repetitive element-polymerase chain reaction for genotyping of clinical and environmental isolates of Legionella spp. SG
73  2010 Susceptibility patterns and molecular epidemiology of multidrug-resistant Acinetobacter baumannii strains from three military hospitals in China. MDRAB, MICs
74  2009 Analysis of the pan genome of Campylobacter jejuni isolates recovered from poultry by pulsed-field gel electrophoresis, multilocus sequence typing (MLST), and repetitive sequence polymerase chain reaction (rep-PCR) reveals different discriminatory capabilities. BOX-PCR, ERIC-PCR, i.e., clades, MLST, PFGE
75  2009 Distribution of genital Lactobacillus strains shared by female sex partners. ---
76  2009 Genetic diversity and host range variation of Ralstonia solanacearum strains entering North America. ---
77  2009 Reliability of Pseudomonas aeruginosa semi-automated rep-PCR genotyping in various epidemiological situations. CF, PFGE-SpeI
78  2009 Use of repetitive element palindromic PCR (rep-PCR) for the epidemiologic discrimination of foodborne pathogens. PCR, REP
79  2008 Use of the DiversiLab semiautomated repetitive-sequence-based polymerase chain reaction for epidemiologic analysis on Acinetobacter baumannii isolates in different Italian hospitals. ---
80  2008 [In vitro activities of colistin combinations against Pseudomonas aeruginosa isolated from the intensive care unit]. ICU
81  2007 Evaluation of repetitive extragenic palindromic-PCR for discrimination of fecal Escherichia coli from humans, and different domestic- and wild-animals. ---
82  2007 Genetic Analysis of Pyricularia grisea Population by rep-PCR During Development of Resistance to Scytalone Dehydratase Inhibitors of Melanin Biosynthesis. SDH
83  2007 Identifying fecal sources in a selected catchment reach using multiple source-tracking tools. MST
84  2006 Clinical evaluation of repetitive sequence-based polymerase chain reaction using the Diversi-Lab System for strain typing of vancomycin-resistant enterococci. ARUP, PFGE, VRE
85  2006 First Report of Bacterial Leaf Spot of Italian Dandelion (Cichorium intybus) Caused by a Pseudomonas syringae Pathovar in California. ---
86  2006 Outbreak of methicillin-resistant Staphylococcus aureus colonization and infection in a neonatal intensive care unit epidemiologically linked to a healthcare worker with chronic otitis. HCWs, MRSA, NICU
87  2006 Phenotypic and Genetic Diversity in Strains of Common Blight Bacteria (Xanthomonas campestris pv. phaseoli and X. campestris pv. phaseoli var. fuscans) in a Secondary Center of Diversity of the Common Bean Host Suggests Multiple Introduction Events. CBB, RAPD
88  2005 First Report of Leaf Necrosis Caused by Pseudomonas viridiflava on Melon Seedlings in Italy. ---
89  2004 Bacterial Blight on Arugula, a New Disease Caused by Pseudomonas syringae pv. Alisalensis in California. ---
90  2004 Genetic Diversity and Pathogenic Variation of Common Blight Bacteria (Xanthomonas campestris pv. phaseoli and X. campestris pv. phaseoli var. fuscans) Suggests Pathogen Coevolution with the Common Bean. CBB, RFLP
91  2004 Molecular genotyping of methicillin-resistant Staphylococcus aureus strains in a teaching hospital in Turkey. MRSA, PFGE
92  2003 Characterization of Erwinia Populations from Nursery Retention Ponds and Lakes Infecting Ornamental Plants in Florida. ---
93  2003 Diversity Among Strains of Xanthomonas campestris pv. vitians from Lettuce. ---
94  2003 Evidence of transmission of Burkholderia cepacia, Burkholderia multivorans and Burkholderia dolosa among persons with cystic fibrosis. CF
95  2003 Genotyping of Serratia marcescens Strains Associated with Cucurbit Yellow Vine Disease by Repetitive Elements-Based Polymerase Chain Reaction and DNA-DNA Hybridization. CYVD, RBR
96  2003 Interactions Between Strains of 2,4-Diacetylphloroglucinol-Producing Pseudomonas fluorescens in the Rhizosphere of Wheat. 2,4-DAPG
97  2002 Clonal clustering and colonization factors among thermolabile and porcine thermostable enterotoxin-producing Escherichia coli. CFs, CS20, ETEC
98  2002 Prevalence of Listeria monocytogenes during production and postharvest processing of cabbage. ---
99  2001 Genetic Diversity of Japanese Strains of Ralstonia solanacearum. ---
100  2000 Bacterial Leaf Spot of Leafy Crucifers in Oklahoma Caused by Pseudomonas syringae pv. maculicola. ---