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■ Search Result - Abbreviation : ChIP-seq

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Abbreviation: ChIP-seq
Appearance Frequency: 862 time(s)
Long forms: 27

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Long Form No. Long Form Research Area Co-occurring Abbreviation PubMed/MEDLINE Info. (Year, Title)
chromatin immunoprecipitation sequencing
(706 times)
Molecular Biology
(126 times)
TFs (31 times)
TF (28 times)
RNA-seq (18 times)
2008 Design and analysis of ChIP-seq experiments for DNA-binding proteins.
coupled with high-throughput sequencing
(61 times)
Biochemistry
(12 times)
ChIP (12 times)
KSHV (3 times)
TF (3 times)
2008 Integration of external signaling pathways with the core transcriptional network in embryonic stem cells.
coupled with massively parallel sequencing
(33 times)
Genetics
(9 times)
ChIP (9 times)
Pol II (2 times)
TFs (2 times)
2008 Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data.
coupled with deep sequencing
(19 times)
Molecular Biology
(6 times)
ChIP (6 times)
TFs (2 times)
AML (1 time)
2012 Genome-wide analysis of Epstein-Barr virus Rta DNA binding.
coupled with next-generation sequencing
(9 times)
Neoplasms
(2 times)
ATAC-seq (1 time)
CRE (1 time)
EBV (1 time)
2011 Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation.
ChIP followed by high-throughput sequencing
(6 times)
Science
(2 times)
AOA-2 (1 time)
CGIs (1 time)
DSBs (1 time)
2012 Condensin dysfunction in human cells induces nonrandom chromosomal breaks in anaphase, with distinct patterns for both unique and repeated genomic regions.
ChIP and high-throughput sequencing
(3 times)
Science
(2 times)
ChIP (1 time)
GATA4 (1 time)
MECs (1 time)
2011 Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.
ChIP followed by deep sequencing
(3 times)
Neoplasms
(1 time)
ChIP (1 time)
CRPC (1 time)
EHF (1 time)
2010 ERG cooperates with androgen receptor in regulating trefoil factor 3 in prostate cancer disease progression.
ChIP followed by next-generation sequencing
(2 times)
Genetics
(1 time)
ChIP (2 times)
ChIP-MS (1 time)
GRO-seq (1 time)
2014 ChIPseek, a web-based analysis tool for ChIP data.
10  Chip sequencing
(2 times)
Biotechnology
(1 time)
ChIP (1 time)
eRNAs (1 time)
GRO-seq (1 time)
2008 An integrated software system for analyzing ChIP-chip and ChIP-seq data.
11  Chromatin immunoprecipitation experiments followed by sequencing
(2 times)
Genetics
(1 time)
C. elegans (1 time)
GSEA (1 time)
2012 ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions.
12  cells using high-throughput DNA sequencing
(1 time)
Molecular Biology
(1 time)
--- 2017 Measuring Sister Chromatid Cohesion Protein Genome Occupancy in Drosophila melanogaster by ChIP-seq.
13  ChIP followed by direct sequencing of DNA fragments
(1 time)
Genetics
(1 time)
ChIP (1 time)
2008 Epigenetics meets next-generation sequencing.
14  ChIP to deep sequencing
(1 time)
Genetics
(1 time)
ChIP (1 time)
HAS (1 time)
MSL-DCC (1 time)
2013 Different chromatin interfaces of the Drosophila dosage compensation complex revealed by high-shear ChIP-seq.
15  ChIP with second generation DNA-sequencing technology
(1 time)
Cell Biology
(1 time)
ChIP (1 time)
2014 Role of ChIP-seq in the discovery of transcription factor binding sites, differential gene regulation mechanism, epigenetic marks and beyond.
16  ChIP with sequencing
(1 time)
Biological Science Disciplines
(1 time)
ChIP (1 time)
2015 A simple method for generating high-resolution maps of genome-wide protein binding.
17  ChIP with whole-genome sequencing
(1 time)
Science
(1 time)
ATAC-seq (1 time)
CAD (1 time)
caQTL (1 time)
2018 Genetic variant at coronary artery disease and ischemic stroke locus 1p32.2 regulates endothelial responses to hemodynamics.
18  Chromatin immunoprecipitation experiments followed by ultra-high-throughput sequencing
(1 time)
Molecular Biology
(1 time)
--- 2012 Computational analysis of protein-DNA interactions from ChIP-seq data.
19  chromatin immunoprecipitation sequencing technology
(1 time)
Molecular Biology
(1 time)
--- 2018 Genome-Wide Identification of Transcription Factor-Binding Sites in Quiescent Adult Neural Stem Cells.
20  chromatin landscape by immunoprecipitation sequencing
(1 time)
Cell Biology
(1 time)
lncRNA (1 time)
ncRNA (1 time)
2015 Dynamic transition of transcription and chromatin landscape during fission yeast adaptation to glucose starvation.
21  chromatin pull-down and deep sequencing
(1 time)
Microbiology
(1 time)
--- 2014 Deep sequencing of HetR-bound DNA reveals novel HetR targets in Anabaena sp. strain PCC7120.
22  co-purifying genomic DNA is then determined by massive parallel sequencing
(1 time)
Biochemistry
(1 time)
ChIP (1 time)
2015 Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments.
23  combination with high-throughput sequencing
(1 time)
Genetics
(1 time)
ChIP (1 time)
PTM (1 time)
qPCR (1 time)
2014 An improved ChIP-seq peak detection system for simultaneously identifying post-translational modified transcription factors by combinatorial fusion, using SUMOylation as an example.
24  Combining this method with high-throughput sequencing
(1 time)
Biology
(1 time)
ChIP (1 time)
2012 Chromatin Immunoprecipitation (ChIP) using Drosophila tissue.
25  conjunction with qPCR or next generation sequencing
(1 time)
Molecular Biology
(1 time)
ChIP (1 time)
N-ChIP (1 time)
2019 Native Chromatin Immunoprecipitation (N-ChIP) in Primary Cortical Rat Astrocytes.
26  coupled with DNA sequencing
(1 time)
Natural Science Disciplines
(1 time)
ENCODE (1 time)
R-ChIP (1 time)
2014 Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: identifying ChIP-quality p300 monoclonal antibodies.
27  coupled with high-throughput, next-generation DNA sequencing
(1 time)
Molecular Biology
(1 time)
ATR-X Syndrome (1 time)
ATRX (1 time)
2018 How to Tackle Challenging ChIP-Seq, with Long-Range Cross-Linking, Using ATRX as an Example.