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Abbreviation: Ser
Appearance Frequency: 984 time(s)
Long forms: 306

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Long Form No. Long Form Research Area Co-occurring Abbreviation PubMed/MEDLINE Info. (Year, Title)
serine
(436 times)
Biochemistry
(64 times)
Thr (120 times)
Gly (65 times)
Ala (63 times)
1976 Drug-induced parkinsonism in the rat- a model for biochemical investigation of the parkinson-syndrome. III. The incorporation of D-glucose-14C(U) in amino acids of brain and liver from rats pretreated with reserpine or with phenothiazines.
Sec-tRNA
(37 times)
Biochemistry
(7 times)
Sec (18 times)
Cys (1 time)
eEF-1 (1 time)
1990 Interaction of a selenocysteine-incorporating tRNA with elongation factor Tu from E.coli.
Serrate
(32 times)
Biology
(18 times)
Dl (16 times)
DV (6 times)
fng (6 times)
1991 The Drosophila gene Serrate encodes an EGF-like transmembrane protein with a complex expression pattern in embryos and wing discs.
selenocysteine tRNA
(31 times)
Molecular Biology
(12 times)
Sec (9 times)
ser (2 times)
TBP (2 times)
1990 Selenocysteine tRNA[Ser]Sec gene is ubiquitous within the animal kingdom.
L-serine
(26 times)
Biochemistry
(8 times)
Gly (7 times)
Glu (5 times)
Asp (4 times)
1987 Synthesis, spectroscopic, mutagenic, and cytotoxicity studies of some mixed-ligand platinum(II) complexes of 2,2'-bipyridine and amino acids.
structure except for tRNA
(16 times)
DNA, Mitochondrial
(9 times)
PCGs (6 times)
DHU (5 times)
TA (2 times)
2010 [Complete mitochondrial genome sequence of Oncomelania hupensis (Gastropoda: Rissooidea)].
seryl-tRNA
(15 times)
Biochemistry
(7 times)
Sec (3 times)
Ala (2 times)
PSTK (2 times)
1975 Fluorescence studies on the interaction between yeast seryl-tRNA synthetase and its substrates.
selenocysteyl-tRNA
(11 times)
Biochemistry
(3 times)
Sec (2 times)
SecS (2 times)
ATP (1 time)
1989 Identification of a selenocysteyl-tRNA(Ser) in mammalian cells that recognizes the nonsense codon, UGA.
suppressor tRNA
(11 times)
Biochemistry
(7 times)
SerRS (2 times)
CAT (1 time)
GUS (1 time)
1992 Some properties of murine selenocysteine synthase.
10  seryl-tRNA synthetase with tRNA
(9 times)
Biochemistry
(4 times)
ser (1 time)
1973 Kinetic studies on the interaction of seryl-tRNA synthetase with tRNA(Ser) and ser-tRNA(ser) from yeast.
11  sequence Asn-X-Thr
(8 times)
Biochemistry
(5 times)
--- 1975 Glycosylation of ribonuclease A catalysed by rabbit liver extracts.
12  sequence of tRNA
(7 times)
Biochemistry
(6 times)
ORFs (1 time)
1973 Nucleotide sequence of tRNA(Ser)(3) from Escherichia coli.
13  species, tRNA
(5 times)
Biochemistry
(2 times)
cytb (1 time)
mC (1 time)
Met (1 time)
1993 A tRNA(Ser)(UCN) gene in Artemia salina mitochondrial DNA: a case of mistaken identity.
14  structure of tRNA
(5 times)
Biochemistry
(3 times)
ser (1 time)
1998 Modeling the tertiary interactions in the eukaryotic selenocysteine tRNA.
15  structure, with a unique exception of tRNA
(5 times)
Molecular Biology
(4 times)
PCGs (2 times)
CR (1 time)
Met (1 time)
2008 The complete mitogenome sequence of the Japanese oak silkmoth, Antheraea yamamai (Lepidoptera: Saturniidae).
16  seed of Herpetospermum pedunculosum
(4 times)
Biological Factors
(1 time)
ABA (1 time)
ANTH (1 time)
APX (1 time)
2007 Anti-inflammatory and free radical scavenging activities of ethanol extracts of three seeds used as "Bolengguazi".
17  sericin
(4 times)
Molecular Biology
(1 time)
CSG (1 time)
GAP-43 (1 time)
Gly (1 time)
1990 Cloning and characterization of the highly polymorphic Ser2 gene of Bombyx mori.
18  specific tRNA
(4 times)
Molecular Biology
(2 times)
Trm44 (1 time)
1994 Escherichia coli seryl-tRNA synthetase recognizes tRNA(Ser) by its characteristic tertiary structure.
19  stem of tRNA
(4 times)
Biochemistry
(2 times)
ASL (1 time)
mC (1 time)
Psi (1 time)
1992 [The identification of the sites of tRNA(Ser)(GCU) interaction in bovine liver with homologous aminoacyl-tRNA-synthetase by the chemical modification method].
20  Schizandrer
(3 times)
Biochemistry
(3 times)
DDB (3 times)
Sin (3 times)
Sol (3 times)
1982 Pharmacological properties of dibenzo[a,c]cyclooctene derivatives isolated from Fructus Schizandrae chinensis. II. Induction of phenobarbital-like hepatic monooxygenases.
21  secondary structures but tRNA
(3 times)
Biochemistry
(2 times)
Met (1 time)
2002 The minimal tRNA: unique structure of Ascaris suum mitochondrial tRNA(Ser)(UCU) having a short T arm and lacking the entire D arm.
22  single tRNA
(3 times)
Molecular Biology
(1 time)
m7G (1 time)
mtDNA (1 time)
1994 The 2.9 A crystal structure of T. thermophilus seryl-tRNA synthetase complexed with tRNA(Ser).
23  O-phospho-l-seryl-tRNA
(2 times)
Biochemistry
(1 time)
PLP (1 time)
SecS (1 time)
2007 Structure and catalytic mechanism of eukaryotic selenocysteine synthase.
24  Schizosaccharomyces pombe tRNA
(2 times)
Biochemistry
(2 times)
ICR (1 time)
Met (1 time)
RNase P (1 time)
1989 Interaction of yeast transcription factor IIIC with dimeric Schizosaccharomyces pombe tRNA(Ser)-tRNA(Met) genes.
25  selenate reductase
(2 times)
Biochemistry
(1 time)
CV (1 time)
DPV (1 time)
serD (1 time)
2000 Cloning and sequencing of the genes encoding the periplasmic-cytochrome B-containing selenate reductase of Thauera selenatis.
26  sequence of tobacco chloroplast genes for tRNA
(2 times)
Botany
(1 time)
--- 1986 DNA sequences of tobacco chloroplast genes for tRNA(Ser) (GGA), tRNA (Thr) (UGU), tRNA (Leu) (UAA), tRNA (Phe) (GAA): the tRNA (Leu) gene contains a 503 bp intron.
27  serenoa repens
(2 times)
Chemistry
(1 time)
LUTS (2 times)
BPH (1 time)
CMI (1 time)
2017 Survivin and NAIP in Human Benign Prostatic Hyperplasia: Protective Role of the Association of Serenoa repens, Lycopene and Selenium from the Randomized Clinical Study.
28  Sereny test
(2 times)
Bacteriology
(1 time)
Igr (2 times)
Inv (2 times)
1986 Isolation, characterization, and mapping of Tn5 insertions into the 140-megadalton invasion plasmid defective in the mouse Sereny test in Shigella flexneri 2a.
29  serine to cognate tRNA
(2 times)
Chemistry Techniques, Analytical
(1 time)
hsSerRS (1 time)
SerRS (1 time)
2010 Crystallization and preliminary X-ray diffraction analysis of human cytosolic seryl-tRNA synthetase.
30  serotonin reuptake inhibitor, sertraline
(2 times)
Brain
(1 time)
Cav-1 (1 time)
CRF (1 time)
GEnCs (1 time)
1991 Pharmacology of locus coeruleus spontaneous and sensory-evoked activity.
31  serum creatinine
(2 times)
Complementary Therapies
(1 time)
CRP (2 times)
ALB (1 time)
ALD (1 time)
2015 [Effect of Shenkang Injection on Kidney Function in Hypertensive Renal Damage Rats].
32  seven-base-pair tRNA
(2 times)
Chemistry Techniques, Analytical
(2 times)
--- 2006 Crystallization and preliminary X-ray diffraction analysis of a tRNASer acceptor-stem microhelix.
33  showed that the tRNA
(2 times)
Cell Biology
(1 time)
ASL (1 time)
Psi (1 time)
1990 Selenocysteine tRNA[Ser]Sec gene is ubiquitous within the animal kingdom.
34  simple identity elements in tRNA
(2 times)
Biochemistry
(2 times)
--- 2007 Superposition of a tRNASer acceptor stem microhelix into the seryl-tRNA synthetase complex.
35  since tRNA
(2 times)
Biochemistry
(2 times)
--- 1991 Selenium induces changes in the selenocysteine tRNA[Ser]Sec population in mammalian cells.
36  spacer sequence between the tRNA
(2 times)
Insects
(1 time)
PCGs (1 time)
2010 The complete mitochondrial genome of the fall webworm, Hyphantria cunea (Lepidoptera: Arctiidae).
37  stem/loop of tRNA
(2 times)
Biochemistry
(1 time)
Psi (1 time)
SerRS (1 time)
tRNA (1 time)
1993 Contributions of discrete tRNA(Ser) domains to aminoacylation by E.coli seryl-tRNA synthetase: a kinetic analysis using model RNA substrates.
38  structure of Ascaris suum mitochondrial tRNA
(2 times)
Biochemistry
(1 time)
--- 2002 The minimal tRNA: unique structure of Ascaris suum mitochondrial tRNA(Ser)(UCU) having a short T arm and lacking the entire D arm.
39  structures of two Escherichia coli tRNA
(2 times)
Biochemistry
(2 times)
--- 2009 The 1.2A crystal structure of an E. coli tRNASer)acceptor stem microhelix reveals two magnesium binding sites.
40  suggest that the tRNA
(2 times)
Cell Biology
(1 time)
AdMLP (1 time)
pol (1 time)
Sec (1 time)
1997 Cross-competition for TATA-binding protein between TATA boxes of the selenocysteine tRNA[Ser]Sec promoter and RNA polymerase II promoters.
41  suggested that tRNA
(2 times)
Genetics
(1 time)
BPV-1 (1 time)
CHO (1 time)
GFPs (1 time)
1992 Expression of variant nuclear Arabidopsis tRNA(Ser) genes and pre-tRNA maturation differ in HeLa, yeast and wheat germ extracts.
42  system for the nonuniversal CUG
(2 times)
Microbiology
(2 times)
ble (1 time)
tef1 (1 time)
2002 A transformation system for the nonuniversal CUG(Ser) codon usage species Candida rugosa.
43  system. tRNA
(2 times)
Biochemistry
(2 times)
m7G (1 time)
mt (1 time)
1998 7-Methylguanosine at the anticodon wobble position of squid mitochondrial tRNA(Ser)GCU: molecular basis for assignment of AGA/AGG codons as serine in invertebrate mitochondria.
44  (S)-serine
(1 time)
Chemistry
(1 time)
SAL (1 time)
2012 Modelling the site of bromide binding in vanadate-dependent bromoperoxidases.
45  5'-strands of the tRNA
(1 time)
Chemistry Techniques, Analytical
(1 time)
--- 2007 tRNASer acceptor stem: conformation and hydration of a microhelix in a crystal structure at 1.8 A resolution.
46  alanine-serine
(1 time)
Physiology
(1 time)
GUS (1 time)
2001 Sequence architecture downstream of the initiator codon enhances gene expression and protein stability in plants.
47  amber-suppressing tRNA
(1 time)
Genetics
(1 time)
--- 1993 Expression of a Drosophila melanogaster amber suppressor tRNA(Ser) in Caenorhabditis elegans.
48  Asp-serine
(1 time)
Pharmacology
(1 time)
Asp (1 time)
2016 N+1 Engineering of an Aspartate Isomerization Hotspot in the Complementarity-Determining Region of a Monoclonal Antibody.
49  Cys-to-serine
(1 time)
Biochemistry
(1 time)
APE1 (1 time)
BER (1 time)
Cys (1 time)
2022 Cysteine Oxidation to Sulfenic Acid in APE1 Aids G-Quadruplex Binding While Compromising DNA Repair.
50  D-Ala-D-Ser or UDP-MurNAc-pentapeptide
(1 time)
Biochemistry
(1 time)
Ala (1 time)
2002 Purification and characterization of VanXY(C), a D,D-dipeptidase/D,D-carboxypeptidase in vancomycin-resistant Enterococcus gallinarum BM4174.
51  D-stem of the tRNA
(1 time)
Molecular Biology
(1 time)
mt (1 time)
1991 Cloning and analysis of five mitochondrial tRNA-encoding genes from the fungus Beauveria bassiana.
52  extra-sequence, the binding mode of tRNA
(1 time)
Chemistry Techniques, Analytical
(1 time)
hsSerRS (1 time)
2010 Crystallization and preliminary X-ray diffraction analysis of human cytosolic seryl-tRNA synthetase.
53  genes--Serrate
(1 time)
Biology
(1 time)
vg (1 time)
Wg (1 time)
1995 Serrate and wingless cooperate to induce vestigial gene expression and wing formation in Drosophila.
54  insulin-stimulated protein kinase B phosphorylation
(1 time)
Cardiology
(1 time)
PLAT (1 time)
RBAI (1 time)
2017 Repeated Binge-Like Alcohol Intoxication: Depot-Specific Adipose Tissue Immuno-Metabolic Dysregulation.
55  L-serine residue esterbonded to tRNA
(1 time)
Science
(1 time)
--- 1990 In vitro synthesis of selenocysteinyl-tRNA(UCA) from seryl-tRNA(UCA): involvement and characterization of the selD gene product.
56  length-specific in tRNA
(1 time)
Biochemistry
(1 time)
Sec (1 time)
1994 Selenocysteine tRNA and serine tRNA are aminoacylated by the same synthetase, but may manifest different identities with respect to the long extra arm.
57  non-suppressing wild-type Drosophila tRNA
(1 time)
Genetics
(1 time)
--- 1993 Expression of a Drosophila melanogaster amber suppressor tRNA(Ser) in Caenorhabditis elegans.
58  O-phosphohomo-serine
(1 time)
Physiology
(1 time)
Met (1 time)
Thr (1 time)
TS (1 time)
2001 Antisense inhibition of threonine synthase leads to high methionine content in transgenic potato plants.
59  ochre-suppressing tRNA
(1 time)
Cell Biology
(1 time)
--- 2000 Suppression of nonsense mutations in cell culture and mice by multimerized suppressor tRNA genes.
60  phospho-serine
(1 time)
Physiology
(1 time)
co-IP (1 time)
COS (1 time)
PEPC (1 time)
2008 Coimmunopurification of phosphorylated bacterial- and plant-type phosphoenolpyruvate carboxylases with the plastidial pyruvate dehydrogenase complex from developing castor oil seeds.
61  Pro-Ser-Cys-Cys-Cys-Thr-Lys-Pro-Thr
(1 time)
Virology
(1 time)
HBsAg (1 time)
1981 Localization of a hepatitis B surface antigen determinant deduced from results of chemical modifications.
62  Saccharomyces cerevisiae gene encoding minor (AGY)tRNA
(1 time)
Biochemistry
(1 time)
--- 1988 Structure of a Saccharomyces cerevisiae gene encoding minor (AGY)tRNA(Ser).
63  Saccharomyces cerevisiae tRNA
(1 time)
Biochemistry
(1 time)
--- 1994 Yeast serine isoacceptor tRNAs: variations of their content as a function of growth conditions and primary structure of the minor tRNA(Ser)GCU.
64  Saccharomyces cerevisiae, that eukaryotic tRNA
(1 time)
Molecular Biology
(1 time)
--- 1987 Nucleotide sequences of three tRNA(Ser) from Drosophila melanogaster reading the six serine codons.
65  same as that in the natural tRNA
(1 time)
Nucleic Acids
(1 time)
--- 2012 A Concept for Selection of Codon-Suppressor tRNAs Based on Read-Through Ribosome Display in an In Vitro Compartmentalized Cell-Free Translation System.
66  same germinal tRNA
(1 time)
Thyroid Diseases
(1 time)
Sec (1 time)
ser (1 time)
2021 Inherited Selenocysteine Transfer RNA Mutation: Clinical and Hormonal Evaluation of 2 Patients.
67  same way as tRNA
(1 time)
Biochemistry
(1 time)
--- 1994 Yeast serine isoacceptor tRNAs: variations of their content as a function of growth conditions and primary structure of the minor tRNA(Ser)GCU.
68  Schechter and Berger nomenclature, comprise a P2-GlyAla
(1 time)
Biochemistry
(1 time)
--- 2011 Substrate specificity of Staphylococcus aureus cysteine proteases--Staphopains A, B and C.
69  Schizosaccharomyces pombe IPTase modifies three different cy-tRNAs
(1 time)
Molecular Biology
(1 time)
i6A37 (1 time)
IPTases (1 time)
Tyr (1 time)
2016 Lack of tRNA-i6A modification causes mitochondrial-like metabolic deficiency in S. pombe by limiting activity of cytosolic tRNATyr, not mito-tRNA.
70  Sec gene in vivo, had no effect on tRNA
(1 time)
Biochemistry
(1 time)
--- 1996 Analysis of the selenocysteine tRNA[Ser]Sec gene transcription in vitro using Xenopus oocyte extracts.
71  Sec to form O-phosphoseryl-tRNA
(1 time)
Environmental Health
(1 time)
ATP (1 time)
Sec (1 time)
SecS (1 time)
2007 New developments in selenium biochemistry: selenocysteine biosynthesis in eukaryotes and archaea.
72  Sec-specific tRNA, tRNA
(1 time)
Chemistry
(1 time)
BAT (1 time)
ELMOD2 (1 time)
GSTA3 (1 time)
2021 Adaptive Thermogenesis in a Mouse Model Lacking Selenoprotein Biosynthesis in Brown Adipocytes.
73  Secisbp2-deficient hepatocytes than in tRNA
(1 time)
Metabolism
(1 time)
Nrf2 (1 time)
Sec (1 time)
2013 Secisbp2 is essential for embryonic development and enhances selenoprotein expression.
74  Secisbp2-deficient than in tRNA
(1 time)
Metabolism
(1 time)
Nrf2 (1 time)
Sec (1 time)
2013 Secisbp2 is essential for embryonic development and enhances selenoprotein expression.
75  second copy, resulting in the arrangement tRNA
(1 time)
Biochemistry
(1 time)
--- 2013 The complete mitochondrial genome of the mountainous duskywing, Erynnis montanus (Lepidoptera: Hesperiidae): a new gene arrangement in Lepidoptera.
76  second residue
(1 time)
Cell Biology
(1 time)
--- 1988 A single amino acid determinant of the membrane localization of lipoproteins in E. coli.
77  second residue of the Lys-Thr
(1 time)
Biochemistry
(1 time)
PBPs (1 time)
1994 The mechanism of action of DD-peptidases: the role of Threonine-299 and -301 in the Streptomyces R61 DD-peptidase.
78  Second, tRNA
(1 time)
Molecular Biology
(1 time)
bp (1 time)
mtDNA (1 time)
PCR (1 time)
2008 The complete mitochondrial genome structure of snow leopard Panthera uncia.
79  secondary structure of wild-type mt-tRNA
(1 time)
Chemistry
(1 time)
--- 2015 Noncanonical secondary structure stabilizes mitochondrial tRNA(Ser(UCN)) by reducing the entropic cost of tertiary folding.
80  Secondly, hydrated
(1 time)
Biology
(1 time)
NPF (1 time)
SA (1 time)
Thr (1 time)
2018 Molecular understanding of the interaction of amino acids with sulfuric acid in the presence of water and the atmospheric implication.
81  secretion caused rapid MLC
(1 time)
Hematology
(1 time)
MLCK (1 time)
2010 Differential phosphorylation of myosin light chain (Thr)18 and (Ser)19 and functional implications in platelets.
82  SecS uses the product of PSTK, O-phosphoseryl-tRNA
(1 time)
Environmental Health
(1 time)
ATP (1 time)
Sec (1 time)
SecS (1 time)
2007 New developments in selenium biochemistry: selenocysteine biosynthesis in eukaryotes and archaea.
83  seems to be relatively relaxed toward tertiary elements of tRNA
(1 time)
Molecular Biology
(1 time)
SerRSs (1 time)
2006 Shuffling of discrete tRNASer regions reveals differently utilized identity elements in yeast and methanogenic archaea.
84  seen in many other metazoan mt tRNA
(1 time)
Molecular Biology
(1 time)
mtDNA (1 time)
2006 The mitochondrial genome of the Korean hairstreak, Coreana raphaelis (Lepidoptera: Lycaenidae).
85  selectively recognizes tRNA
(1 time)
Molecular Biology
(1 time)
--- 1994 Escherichia coli seryl-tRNA synthetase recognizes tRNA(Ser) by its characteristic tertiary structure.
86  selenophosphate to initiate attack on the proposed aminoacrylyl-tRNA
(1 time)
Biochemistry
(1 time)
PLP (1 time)
SecS (1 time)
2007 Structure and catalytic mechanism of eukaryotic selenocysteine synthase.
87  selenoprotein synthesis by selenocysteine tRNA
(1 time)
Biochemistry
(1 time)
Sec (1 time)
2000 Inhibition of selenoprotein synthesis by selenocysteine tRNA[Ser]Sec lacking isopentenyladenosine.
88  selenoproteins in neurons by genetic inactivation of the tRNA
(1 time)
Biology
(1 time)
CR (1 time)
GPX4 (1 time)
PV (1 time)
2009 Neuronal selenoprotein expression is required for interneuron development and prevents seizures and neurodegeneration.
89  selenoproteins through tRNA
(1 time)
Biochemistry
(1 time)
LPS (1 time)
Se (1 time)
2021 Selenium-dependent metabolic reprogramming during inflammation and resolution.
90  selenoproteins to a lesser extent than inactivation of tRNA
(1 time)
Biochemistry
(1 time)
SECIS (1 time)
2014 Impaired selenoprotein expression in brain triggers striatal neuronal loss leading to co-ordination defects in mice.
91  Selonsertib
(1 time)
Pharmacology
(1 time)
ASK1 (1 time)
OA (1 time)
2021 Selonsertib Alleviates the Progression of Rat Osteoarthritis: An in vitro and in vivo Study.
92  separated domains of SctRNA
(1 time)
Molecular Biology
(1 time)
SerRSs (1 time)
2006 Shuffling of discrete tRNASer regions reveals differently utilized identity elements in yeast and methanogenic archaea.
93  sequence analyses found a duplication of the tRNA
(1 time)
Biochemistry
(1 time)
mt (1 time)
SNP (1 time)
TMS (1 time)
2011 Comparative whole genome sequencing reveals phenotypic tRNA gene duplication in spontaneous Schizosaccharomyces pombe La mutants.
94  sequence analysis of cDNA clones for tRNA
(1 time)
Biochemistry
(1 time)
--- 2000 Addition of non-genomically encoded nucleotides to the 3'-terminus of maize mitochondrial mRNAs: truncated rps12 mRNAs frequently terminate with CCA.
95  sequence and length variations shown within tRNA
(1 time)
Biochemistry
(1 time)
--- 1990 Conversion of aminoacylation specificity from tRNA(Tyr) to tRNA(Ser) in vitro.
96  Sequence and unusual 3' flanking region of the rat tRNA
(1 time)
Molecular Biology
(1 time)
nt (1 time)
1995 Sequence and unusual 3' flanking region of the rat tRNA[Ser]Sec gene.
97  sequence apolar-Xaa-Xaa-Xaa-Gly-Xaa-Xaa-Yaa-Xaa-Gly-LYs-Thr
(1 time)
Biochemistry
(1 time)
--- 1986 The primary structure of the alpha subunit of human elongation factor 1. Structural aspects of guanine-nucleotide-binding sites.
98  sequence CGA corresponding to the codon UCG, indicating that tRNA
(1 time)
Biochemistry
(1 time)
--- 1994 Unique structure of new serine tRNAs responsible for decoding leucine codon CUG in various Candida species and their putative ancestral tRNA genes.
99  sequence change, in the mitochondrial tRNA
(1 time)
Otolaryngology
(1 time)
--- 1995 Mitochondrial mutation associated with nonsyndromic deafness.
100  sequence CHO is consistent with the general formula Asn-X-Thr
(1 time)
Biochemistry
(1 time)
--- 1985 Halobacterial flagellins are sulfated glycoproteins.