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[Related PubMed/MEDLINE]
Total Number of Papers: 7782
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| No. |
Year |
Title |
Co-occurring Abbreviation |
| 1 |
2023 |
A Network Pharmacology-Based Study of Potential Targets of Angelicae Pubescentis-Herba Taxilli Compound for the Treatment of Osteoarthritis. |
GO, HT, KEGG, OA, TCMSP |
| 2 |
2023 |
A Network Pharmacology-Based Study on the Mechanism of Dibutyl Phthalate of Ocimum basilicum L. against Alzheimer's Disease through the AKT/GSK-3β Pathway. |
AD, DBP, GO, KEGG, LDH, ROS |
| 3 |
2023 |
A novel risk model based on the correlation between the expression of basement membrane genes and immune infiltration to predict the invasiveness of pituitary adenomas. |
AUC, BM, DEGs, GEO, IPAs, NIPAs, PAs, qPCR, ROC |
| 4 |
2023 |
A novel transcription factor-based signature to predict prognosis and therapeutic response of hepatocellular carcinoma. |
GO, HCC, HMGA1, KEGG, MAFG, OS, ROC, TACE, TFs |
| 5 |
2023 |
A pathway analysis-based algorithm for calculating the participation degree of ncRNA in transcriptome. |
C value, DEGs, FC, PDNT |
| 6 |
2023 |
A porcine model of early-onset scoliosis combined with thoracic insufficiency syndrome: Construction and transcriptome analysis. |
CT, DEmRNAs, EOS, TIS, TLV |
| 7 |
2023 |
A systematic review of state-of-the-art strategies for machine learning-based protein function prediction. |
--- |
| 8 |
2023 |
AFTGAN: Prediction of multi-type PPI based on attention free transformer and graph attention network. |
--- |
| 9 |
2023 |
An herbal formulation "Shenshuaifu Granule" alleviates cisplatin-induced nephrotoxicity by suppressing inflammation and apoptosis through inhibition of the TLR4/MyD88/NF-κB pathway. |
AKI, BP, BUN, GO, IHC, KEGG, PAS, SCr, SSF, TLC, TUNEL, WB |
| 10 |
2023 |
An integrative analysis of an lncRNA-mRNA competing endogenous RNA network to identify functional lncRNAs in uterine leiomyomas with RNA sequencing. |
DAVID, DEmRNAs, GO, KEGG, ULs |
| 11 |
2023 |
Analysis and identification of potential key genes in hepatic ischemia-reperfusion injury. |
Cdh3, DEGs, DElncRNAs, GPC-3, GSEA, HIRI, KRT14, Krt7, lncRNA, mRNA, MSLN, qRT-PCR, RF, Upk3b |
| 12 |
2023 |
Analysis of Long Noncoding RNAs-Related Regulatory Mechanisms in Duchenne Muscular Dystrophy Using a Disease-Related lncRNA-mRNA Pathway Network. |
DELs, DEMs, DMD, FDR |
| 13 |
2023 |
Analyzing the multi-target pharmacological mechanism of folium Artemisia argyi acting on breast cancer: a network pharmacology approach. |
CASP3, DL, EGFR, FAA, GO, KEGG, MAPK1, mTOR, MYC, OB, OMIM, STRING, TCMSP, VEGFA |
| 14 |
2023 |
Anxiolytic-like effect of Suanzaoren-Wuweizi herb-pair and evidence for the involvement of the monoaminergic system in mice based on network pharmacology. |
EPM, LDB, OFT, S-W, SWHP, TCMSP |
| 15 |
2023 |
Application value of whole exome sequencing in screening and identifying novel mutations of hypopharyngeal cancer. |
ACMG, GO, InDels, SNVs |
| 16 |
2023 |
Biobran/MGN-3, an Arabinoxylan Rice Bran, Protects against Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2): An In Vitro and In Silico Study. |
COVID-19, PLpro, SARS-CoV-2 |
| 17 |
2023 |
Bioinformatic Analysis of Genetic Factors from Human Blood Samples and Postmortem Brains in Parkinson's Disease. |
PD |
| 18 |
2023 |
Bioinformatics and Connectivity Map Analysis Suggest Viral Infection as a Critical Causative Factor of Hashimoto's Thyroiditis. |
CMap, DEGs, GEO, GO, GSEA, HT |
| 19 |
2023 |
Bioinformatics Identification of Therapeutic Gene Targets for Gastric Cancer. |
DEGs, EMT, FBN1, GC, GEO, GEPIA, GO, GSCA, KM, OS |
| 20 |
2023 |
Biological Functions of Selenoprotein Glutathione Peroxidases (GPXs) and their Expression in Osteoarthritis. |
CAT, GPXs, OA, PBMCs, qRT-PCR, SOD1, SOD2 |
| 21 |
2023 |
Biological network topology features predict gene dependencies in cancer cell-lines. |
DependANT |
| 22 |
2023 |
circAR-E2E4-miR-665-STAT3 axis is a potential regulatory network in triple-negative breast cancer. |
AR, circRNAs, ncRNA, TNBC |
| 23 |
2023 |
Comparative genomics and interactomics of polyadenylation factors for the prediction of new parasite targets: Entamoeba histolytica as a working model. |
--- |
| 24 |
2023 |
Comparative Transcriptome Profiling of Cassava Tuberous Roots in Response to Postharvest Physiological Deterioration. |
DEGs, PPD |
| 25 |
2023 |
Comprehensive analysis of PTPN family expression and prognosis in acute myeloid leukemia. |
AML, CPTAC, PTPNs, qRT-PCR |
| 26 |
2023 |
Comprehensive analysis of the correlation between GSTM1 and tumor immunity in colon cancer. |
AUC, COAD, CPTAC, GSTM1, HPA |
| 27 |
2023 |
Comprehensive bulk and single-cell transcriptome profiling give useful insights into the characteristics of osteoarthritis associated synovial macrophages. |
GSVA, LASSO, OA |
| 28 |
2023 |
Comprehensive transcriptomics and proteomics analysis of Carassius auratus gills in response to Aeromonas hydrophila. |
NF-kappaB, NLR |
| 29 |
2023 |
Computed tomography-detected extramural venous invasion-related gene signature: a potential negative biomarker of immune checkpoint inhibitor treatment in patients with gastric cancer. |
CT, EMVI, GC, GEO, ICIs, MSI, PCA, TMB |
| 30 |
2023 |
Construction and validation of a prognostic model based on stage-associated signature genes of head and neck squamous cell carcinoma: a bioinformatics study. |
AUC, DEGs, GEO, GO, HNSCC, HR, KEGG, LASSO, ROC |
| 31 |
2023 |
Construction of HBV gene-related prognostic and diagnostic models for hepatocellular carcinoma. |
DEGs, HBV, HCC, RS, SVM, TIDE |
| 32 |
2023 |
Correlation between oncogene integrator complex subunit 7 and a poor prognosis in lung adenocarcinoma. |
INTS7, LUAD, RNA, TNM |
| 33 |
2023 |
CRISPR Screen Reveals BRD2/4 Molecular Glue-like Degrader via Recruitment of DCAF16. |
MGs |
| 34 |
2023 |
Deciphering cervical cancer-associated biomarkers by integrated multi-omics approach. |
Cdc45, CDCA5, CDT1, CESC, DEGs, GEO, GSEA, KM, MCM4, NUSAP1, OS, STRING |
| 35 |
2023 |
Deciphering the Mechanism of Wogonin, a Natural Flavonoid, on the Proliferation of Pulmonary Arterial Smooth Muscle Cells by Integrating Network Pharmacology and In Vitro Validation. |
GO, HIF-1alpha, KEGG, NOX4, PASMCs, PDGF-BB, PH |
| 36 |
2023 |
Dehydroeburicoic Acid, a Dual Inhibitor against Oxidative Stress in Alcoholic Liver Disease. |
ALD, DEA |
| 37 |
2023 |
Design, synthesis and biological evaluation of quercetin derivatives as novel β-catenin/B-cell lymphoma 9 protein-protein interaction inhibitors. |
BCL9 |
| 38 |
2023 |
Development of a classification model and an immune-related network based on ferroptosis in periodontitis. |
FRGs, LASSO, ROC |
| 39 |
2023 |
Discovery of Novel 3-Phenylpiperidine Derivatives Targeting the β-Catenin/B-Cell Lymphoma 9 Interaction as a Single Agent and in Combination with the Anti-PD-1 Antibody for the Treatment of Colorectal Cancer. |
Ab, BCL9, CRC |
| 40 |
2023 |
Disease-Gene Networks of Skin Pigmentation Disorders and Reconstruction of Protein-Protein Interaction Networks. |
--- |
| 41 |
2023 |
Effects of RFRP‑3 on an ovariectomized estrogen‑primed rat model and HEC‑1A human endometrial carcinoma cells. |
DEPs, Gna, GnIH, GO, GPR147, KEGG, LC, MS/MS, OEP, RFRP-3 |
| 42 |
2023 |
Evaluation of the proteomic landscape of HPV E7‑induced alterations in human keratinocytes reveal therapeutically relevant pathways for cervical cancer. |
CC, HaCaT, HPV, PGK1 |
| 43 |
2023 |
Exploration of comorbidity mechanisms and potential therapeutic targets of rheumatoid arthritis and pigmented villonodular synovitis using machine learning and bioinformatics analysis. |
DEGs, GEO, LASSO, PVNS, RA, RF, ssGSEA, WGCNA |
| 44 |
2023 |
Exploring the immunomodulatory effects and mechanisms of Xinjiang fermented camel milk-derived bioactive peptides based on network pharmacology and molecular docking. |
GO |
| 45 |
2023 |
Exploring the mechanism by which aqueous Gynura divaricata inhibits diabetic foot based on network pharmacology, molecular docking and experimental verification. |
DF, GD, GO, KEGG, TCMIP |
| 46 |
2023 |
Exploring the mechanisms underlying the therapeutic effect of the drug pair Rhubarb-Coptis in diabetic nephropathy using network pharmacology and molecular docking analysis. |
DAVID, DN, GO, KEGG, OMIM, STRING, TCMSP, TTD |
| 47 |
2023 |
Exploring the Potential Mechanism of Artemisinin and Its Derivatives in the Treatment of Osteoporosis Based on Network Pharmacology and Molecular Docking. |
ARE, ARM, ARS, ART, DHA, OP |
| 48 |
2023 |
FAS-mediated circRNA-miRNA-mRNA Crosstalk Network Regulates Immune Cell Infiltration in Cerebral Infarction. |
CI, circRNAs, mRNAs |
| 49 |
2023 |
Feasibility and mechanism analysis of Reduning in the prevention of sepsis-induced pulmonary fibrosis. |
AMs, CLP, MAPK, TCM |
| 50 |
2023 |
Gamma-Aminobutyric Acid Type A Receptor Subunit Pi is a potential chemoresistance regulator in colorectal cancer. |
CRC, DEGs, GEO, HPA, qPCR, STRING |
| 51 |
2023 |
Glycine Decarboxylase Suppresses the Renal Cell Carcinoma Growth and Regulates Its Gene Expressions and Functions. |
CCK-8, GLDC, GO, HPLC, KEGG, MS/MS, PCR, RCC |
| 52 |
2023 |
High throughput sequencing revealed enhanced cell cycle signaling in SLE patients. |
CCK-8, GO, KEGG, qRT-PCR, SLE |
| 53 |
2023 |
Identification and Analysis of Potential Immune-Related Biomarkers in Endometriosis. |
DEGs, DEIRGs, DETFs, GEO, GO, ImmPort, IRG, KEGG, qRT-PCR, ROC |
| 54 |
2023 |
Identification and clinical validation of key genes as the potential biomarkers in colorectal adenoma. |
CRA, CRC, DEGs, GEO |
| 55 |
2023 |
Identification and validation of immune cells and hub genes alterations in recurrent implantation failure: A GEO data mining study. |
ART, ceRNA, DEGs, GEO, lmQCM, lncRNAs, miRNAs, RIF, ssGSEA, WGCNA |
| 56 |
2023 |
Identification and validation of oxidative stress and immune-related hub genes in Alzheimer's disease through bioinformatics analysis. |
AD, DEGs, DEOSGs, TFs, WGCNA |
| 57 |
2023 |
Identification of abnormally methylated differentially expressed genes in chronic periodontitis by integrated bioinformatics analysis. |
--- |
| 58 |
2023 |
Identification of Comorbidities, Genomic Associations, and Molecular Mechanisms for COVID-19 Using Bioinformatics Approaches. |
DEGs, GEO |
| 59 |
2023 |
Identification of Differentially Expressed Genes Particularly Associated with Immunity in Uremia Patients by Bioinformatic Analysis. |
DEGs, FOXD3, IRF7, ISRE, POU6F1 |
| 60 |
2023 |
Identification of Differentially Expressed Proteins in Rats with Early Subacute Spinal Cord Injury Using an iTRAQ-based Quantitative Analysis. |
CNS, DEPs, GO, iTRAQ, KEGG, SCI |
| 61 |
2023 |
Identification of ferroptosis‑associated genes in chronic kidney disease. |
CKD, DFGs, GO, HSP, KEGG, RT-q, SLC2A1 |
| 62 |
2023 |
Identification of FGF13 as a Potential Biomarker and Target for Diagnosis of Impaired Glucose Tolerance. |
GO, IGT, KEGG, ND, T2DM |
| 63 |
2023 |
Identification of hub genes correlated with the initiation and development in chronic kidney disease via bioinformatics analysis. |
CKD, DEGs, GO, UUO |
| 64 |
2023 |
Identification of immune associated potential molecular targets in proliferative diabetic retinopathy. |
DR, HG, HRMECs, NVMs, PDR, qRT-PCR |
| 65 |
2023 |
Identification of Immune Infiltration and the Potential Biomarkers in Diabetic Peripheral Neuropathy through Bioinformatics and Machine Learning Methods. |
DEGs, DPN, GEO, LASSO, SVM-RFE |
| 66 |
2023 |
Identification of Key Biomarkers and Candidate Molecules in Non-Small-Cell Lung Cancer by Integrated Bioinformatics Analysis. |
DEGs, NSCLC, PD-1 |
| 67 |
2023 |
Identification of key ferroptosis genes in diabetic retinopathy based on bioinformatics analysis. |
DEFRGs, DR, GEO |
| 68 |
2023 |
Identification of Lipocalin 2 as a Ferroptosis-Related Key Gene Associated with Hypoxic-Ischemic Brain Damage via STAT3/NF-κB Signaling Pathway. |
ANN, DEGs, HIBD, LCN2, PI, RF, SVM-RFE, TEM |
| 69 |
2023 |
Identification of Oxidative Stress-Related Biomarkers in Diabetic Kidney Disease. |
DEGs, DKD, GEO, GO, KEGG, MCODE, ROC, ROS, TF, WGCNA |
| 70 |
2023 |
Identification of potential biomarkers for papillary thyroid carcinoma by comprehensive bioinformatics analysis. |
DEGs, GO, KEGG, PTC |
| 71 |
2023 |
Identification of Potential Differentially-Methylated/Expressed Genes in Chronic Obstructive Pulmonary Disease. |
COPD, ROC |
| 72 |
2023 |
Identification of potential prognostic biomarkers in vulval squamous cell carcinoma based on human papillomavirus infection Status-Analysis of GSE183454. |
GEO, TME, VSCC |
| 73 |
2023 |
Identification of potential target genes of honokiol in overcoming breast cancer resistance to tamoxifen. |
AUC, DEGs, EGFR, GO, Hon, KEGG, MCF-7, ROC, TAM |
| 74 |
2023 |
Identification of prognosis-related gene features in low-grade glioma based on ssGSEA. |
DEGs, GO, KEGG, LASSO, LGG, OS, ssGSEA, TCRS |
| 75 |
2023 |
Identification of TAC1 Associated with Alzheimer's Disease Using a Robust Rank Aggregation Approach. |
AD, DEGs, RRA |
| 76 |
2023 |
Identification of the osteoarthritis signature gene PDK1 by machine learning and its regulatory mechanisms on chondrocyte autophagy and apoptosis. |
DEGs, LASSO, OA, SVM-RFE, WGCNA |
| 77 |
2023 |
Identification of the potential biomarkers associated with circadian rhythms in heart failure. |
CGDB, DEGs, HF, ROC, RT-PCR |
| 78 |
2023 |
Identifying the mechanisms and molecular targets of Hongjingtian injection on treatment of TGFβ1-induced HK-2 cells: coupling network pharmacology with experimental verification. |
CKD, HJT, KEGG, qPCR, TCMSP, TIF, WB |
| 79 |
2023 |
Improvement of obesity by Liupao tea is through the IRS-1/PI3K/AKT/GLUT4 signaling pathway according to network pharmacology and experimental verification. |
EA, EGCG, FAS, GA, GLUT4, HPLC, IL-6, IR, IRS-1, LC-MS, LT, LTWE, PI3K-AKT, PPARgamma, TNF |
| 80 |
2023 |
Infiltration of LPAR5+ macrophages in osteosarcoma tumor microenvironment predicts better outcomes. |
TME |
| 81 |
2023 |
Inhibitors of Keap1-Nrf2 protein-protein interaction reduce estrogen responsive gene expression and oxidative stress in estrogen receptor-positive breast cancer. |
ER, Nrf2 |
| 82 |
2023 |
Integrated bioinformatics-based identification of potential diagnostic biomarkers associated with atopic dermatitis. |
DEGs, GEO, GO, KEGG |
| 83 |
2023 |
Integrative analyses of radiation-related genes and biomarkers associated with breast cancer. |
GEO, GO, GSEA, HPA |
| 84 |
2023 |
Integrative analysis of microRNA-320a-related genes in osteoarthritis cartilage. |
DAVID, DEGs, GO, KEGG, OA |
| 85 |
2023 |
Integrative Bioinformatics Analysis of mRNA Expression Profiles of Mice to Explore the Key Genes Involved in Crim1 Mutation-Induced Congenital Cataracts. |
CC, DEGs |
| 86 |
2023 |
Integrative Multiomics and Regulatory Network Analyses Uncovers the Role of OAS3, TRAFD1, miR-222-3p, and miR-125b-5p in Hepatitis E Virus Infection. |
CHEV, DEGs, FFL, HEV, IFN, OAS3, TF, TRAFD1, WGCN |
| 87 |
2023 |
iTRAQ-based proteomic analysis unveils ACSL4 as a novel potential regulator of human endometrial receptivity. |
DEPs, RIF |
| 88 |
2023 |
Knockdown of carboxypeptidase A4 (CPA4) inhibits gastric cancer cell progression via cell cycle arrest and apoptosis. |
AGS cell line, CPA4, EMT, MAPK, mTOR, PI3K, qRT-PCR |
| 89 |
2023 |
Learning the protein language of proteome-wide protein-protein binding sites via explainable ensemble deep learning. |
EDLM, PPIs |
| 90 |
2023 |
Ligand-Based Drug Design of Novel Antimicrobials against Staphylococcus aureus by Targeting Bacterial Transcription. |
MDRSA, MRSA |
| 91 |
2023 |
Lnc-TMEM132D-AS1 as a potential therapeutic target for acquired resistance to osimertinib in non-small-cell lung cancer. |
ENTPD1, lncRNAs, NSCLC |
| 92 |
2023 |
LRRC superfamily expression in stromal cells predicts the clinical prognosis and platinum resistance of ovarian cancer. |
CAFs, HGSC, LRRC, OC |
| 93 |
2023 |
Mechanism of immune infiltration in synovial tissue of osteoarthritis: a gene expression-based study. |
DEGs, WGCNA |
| 94 |
2023 |
Network analysis of anti-inflammatory phytochemicals and omics data for Rheumatoid arthritis. |
MAPK, MCODE, RA |
| 95 |
2023 |
Network Pharmacology and Experimental Validation to Explore the Molecular Mechanisms of Compound Huangbai Liquid for the Treatment of Acne. |
CHL, GO, KEGG, TCM |
| 96 |
2023 |
Optimization of protein removal process of Lonicera japonica polysaccharide and its immunomodulatory mechanism in cyclophosphamide-induced mice by metabolomics and network pharmacology. |
BBD, CTX, IL-2, LJP, RSM, TCA |
| 97 |
2023 |
Pharmacological Mechanism of Sancao Yuyang Decoction in the Treatment of Oral Mucositis Based on Network Pharmacology and Experimental Validation. |
GO, KEGG, OM, SCYYD |
| 98 |
2023 |
Phosphoproteomic analysis identifies differentially expressed phosphorylation sites that affect muscle fiber type in pigs. |
DEPSs |
| 99 |
2023 |
Poly(I:C)-exposed zebrafish shows autism-like behaviors which are ameliorated by fabp2 gene knockout. |
ASD, DEGs, fabp2, GO, KEGG, MIA, vil1 |
| 100 |
2023 |
Potential Therapeutic Mechanism of Scutellaria baicalensis Georgi against Ankylosing Spondylitis Based on a Comprehensive Pharmacological Model. |
AS, DEGs, GO, KEGG, SBG |
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