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■ Abbreviation / Long Form : ST / sequence type

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Abbreviation:   ST  (>> Co-occurring Abbreviation)
Long Form:   sequence type
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No. Year Title Co-occurring Abbreviation
2021 A Case Report of Bacterial Meningitis Caused by an Emerging Strain of Penicillin-Resistant Non-Vaccine Serotype 10A. gPRSP, NIID
2021 A community-acquired Legionnaires' disease outbreak caused by Legionella pneumophila serogroup 2: an uncommon event, Italy, August to October 2018. LD, Lp2, UAT
2021 A multisite genomic epidemiology study of Clostridioides difficile infections in the USA supports differential roles of healthcare versus community spread for two common strains. SNV
2021 A new MALDI-TOF approach for the quick sequence type identification of Legionella pneumophila. MSP, SBT
2021 A Nosocomial Outbreak of Invasive Listeriosis in An Italian Hospital: Epidemiological and Genomic Features. L. monocytogenes
2021 A Sequence Type 23 Hypervirulent Klebsiella pneumoniae Strain Presenting Carbapenem Resistance by Acquiring an IncP1 bla KPC-2 Plasmid. COPD, CR-hvKP, Inc
2021 Accurate detection of oxacillin-resistant Staphylococcus lugdunensis by use of agar dilution. CDD, MLST, OAD, ORSL
2021 Acquiring high expression of suilysin enable non-epidemic Streptococccus suis to cause streptococcal toxic shock-like syndrome (STSLS) through NLRP3 inflammasome hyperactivation. S. suis, SLY, STSLS
2021 Antibiotic Resistance and Biofilm Production Capacity in Clostridioides difficile. C. difficile
10  2021 Antibiotic Treatment Regimes as a Driver of the Global Population Dynamics of a Major Gonorrhea Lineage. ESCs
11  2021 Antimicrobial Resistance and Genetic Lineages of Staphylococcus aureus from Wild Rodents: First Report of mecC-Positive Methicillin-Resistant S. aureus (MRSA) in Portugal. IEC, MRSA
12  2021 Antimicrobial resistance and interspecies gene transfer in Campylobacter coli and Campylobacter jejuni isolated from food animals, poultry processing, and retail meat in North Carolina, 2018-2019. AMR, GBS, NARMS
13  2021 Antimicrobial susceptibility, serotype distribution, virulence profile and molecular typing of piliated clinical isolates of pneumococci from east coast, Peninsular Malaysia. MDR, MLST, PCVs
14  2021 Antimicrobial-Resistant Escherichia coli Strains and Their Plasmids in People, Poultry, and Chicken Meat in Laos. AMR, cgST, WGS
15  2021 Biofilm production ability and other microbiological features of Streptococcus canis. AMR, BPA, SCM
16  2021 Bloodstream Infections Caused by Extended-Spectrum Beta-Lactamase-Producing Escherichia coli in Patients with Liver Cirrhosis. BSIs, ESBL-EC, NESBLEC
17  2021 Carbapenemase IncF-borne blaNDM-5 gene in the E. coli ST167 high-risk clone from canine clinical infection, Italy. ---
18  2021 Ceftolozane/Tazobactam Resistance and Mechanisms in Carbapenem-Nonsusceptible Pseudomonas aeruginosa. C/T, CNSPA, WGS
19  2021 Changing characteristics of S. aureus bacteremia caused by PVL-negative, MRSA strain over 11 years. MIC, MRSA, RR
20  2021 Characteristics of Salmonella From Chinese Native Chicken Breeds Fed on Conventional or Antibiotic-Free Diets. ---
21  2021 Characterization of a new multidrug-resistant Brazilian K. pneumoniae isolate and 172 Klebsiella spp. sequenced strains: Genomic island, multilocus sequence typing and capsule locus dataset. MIS, NCBI, PIs, RIs
22  2021 Characterization of an NDM-5-producing hypervirulent Klebsiella pneumoniae sequence type 65 clone from a lung transplant recipient. NDM
23  2021 Characterization of Arcobacter spp. Isolated from human diarrheal, non-diarrheal and food samples in Thailand. AST, MLST
24  2021 Characterization of bla NDM-5-harbouring Klebsiella pneumoniae sequence type 11 international high-risk clones isolated from clinical samples in Yangon General Hospital, a tertiary-care hospital in Myanmar. ---
25  2021 Characterization of Burkholderia cepacia complex from environment influenced by human waste. Bcc
26  2021 Characterization of fosfomycin resistance and molecular epidemiology among carbapenem-resistant Klebsiella pneumoniae strains from two tertiary hospitals in China. CRKP, IS
27  2021 Characterization of the emerging multidrug-resistant Salmonella enterica serotype Kentucky ST314 in China. PMQR, QRDR, S. Kentucky, SGI1
28  2021 Circulation of Extended-Spectrum Beta-Lactamase-Producing Escherichia coli of Pandemic Sequence Types 131, 648, and 410 Among Hospitalized Patients, Caregivers, and the Community in Rwanda. E. coli, ESBL, MDR, VAGs
29  2021 Clinical and bacterial features of Group B streptococci with reduced penicillin susceptibility from respiratory specimens: a case-control study. PRGBS, PSGBS
30  2021 Clinical and molecular characterization of the first culture-confirmed pediatric fulminant meningococcemia case caused by a serogroup Y clonal complex 23 strain in China. CC, MPVs
31  2021 Clinical and Molecular Findings of Infections Caused by Extended-Spectrum β-Lactamase-Producing Enterobacterales in Patients with Solid Tumors: A Single-Center Study. ESBL-E, MLST, PCR
32  2021 Clonal CTX-M-15-Producing Escherichia coli ST-949 Are Present in German Surface Water. ESBL
33  2021 Cluster of S. maltophilia among patients with respiratory tract infections at an intensive care unit. ICUs, WGS
34  2021 Colonization dynamics of Klebsiella pneumoniae in the pet animals and human owners in a single household. GI
35  2021 Comparative Genomic Analysis Provides Insights into the Evolution and Genetic Diversity of Community-Genotype Sequence Type 72 Staphylococcus aureus Isolates. CA-MRSA, MGEs, MSSA
36  2021 Comparative genomics of MRSA strains from human and canine origins reveals similar virulence gene repertoire. MRSA
37  2021 Comparative Virulence and Genomic Analysis of Streptococcus suis Isolates. ---
38  2021 Complete genome resources for Xylella fastidiosa strains AlmaEM3 and BB08-1 reveal prophage-associated structural variation among blueberry-infecting strains. ---
39  2021 Cytotoxicity, Intracellular Replication, and Contact-Dependent Pore Formation of Genotyped Environmental Legionella pneumophila Isolates from Hospital Water Systems in the West Bank, Palestine. LD, SBT, SRBCs
40  2021 Detection of a New Resistance-Mediating Plasmid Chimera in a blaOXA-48-Positive Klebsiella pneumoniae Strain at a German University Hospital. Inc
41  2021 Detection, spread and phylogeny of meticillin-resistant Staphylococcus aureus sequence type 45 in Taiwan. CGMH, MRSA, TSAR, WGS
42  2021 Dissemination of different sequence types lineages harboring bla CTX-M-15 among uropathogenic Escherichia coli in Kerman, Iran. MLST, UPEC, UTIs
43  2021 Dissemination of novel Tn7 family transposons carrying genes for synthesis and uptake of fimsbactin siderophores among Acinetobacter baumannii isolates. GC1
44  2021 Distinct clonal lineages and within-host diversification shape invasive Staphylococcus epidermidis populations. ackA
45  2021 Distribution of Virulence Factors and Resistance Determinants in Three Genotypes of Staphylococcus argenteus Clinical Isolates in Japan. ---
46  2021 Distribution of virulence genes and the molecular epidemiology of Streptococcus pyogenes clinical isolates by emm and multilocus sequence typing methods. GAS, MLST, PCR
47  2021 Does an Antibiotic Stewardship Applied in a Pig Farm Lead to Low ESBL Prevalence? ESBL, PBRT
48  2021 Draft genome sequences and resistome analysis of multidrug-resistant mcr-1-harbouring Escherichia coli isolated from pre-harvest poultry in Lebanon. MDR, WGS
49  2021 Dynamic changes in otopathogens colonizing the nasopharynx and causing acute otitis media in children after 13-valent (PCV13) pneumococcal conjugate vaccination during 2015-2019. AOM, Hi, Mcat, MEF, NP, Spn
50  2021 EHEC O111:H8 strain and norovirus GII.4 Sydney [P16] causing an outbreak in a daycare center, Brazil, 2019. EHEC, HC, HUS
51  2021 Emergence of carbapenem-resistant Klebsiella pneumoniae harbouring bla OXA-48-like genes in China. ---
52  2021 Emergence of Hybrid Resistance and Virulence Plasmids Harboring New Delhi Metallo-β-Lactamase in Klebsiella pneumoniae in Russia. CR-hvKp, NDM
53  2021 Emergence of Invasive Serotype Ib Sequence Type 10 Group B Streptococcus Disease in Chinese Infants Is Driven by a Tetracycline-Sensitive Clone. GBS
54  2021 Emergence of the New KPC-49 Variant Conferring an ESBL Phenotype with Resistance to Ceftazidime-Avibactam in the ST131-H30R1 Escherichia coli High-Risk Clone. ESBL
55  2021 Emergence of transferable ceftazidime-avibactam resistance in KPC-producing Klebsiella pneumoniae due to a novel CMY AmpC β-lactamase in China. CAZ/AVI, KPC, N346I, S1-PFGE, WGS
56  2021 Emerging carbapenem-resistant Klebsiella pneumoniae sequence type 16 causing multiple outbreaks in a tertiary hospital in southern Vietnam. ---
57  2021 Emerging SARS-CoV-2 diversity revealed by rapid whole genome sequence typing. CCs
58  2021 Emerging SARS-CoV-2 Diversity Revealed by Rapid Whole-Genome Sequence Typing. CCs
59  2021 Environmental Exposure of Wild Carnivores to Zoonotic Pathogens: Leptospira Infection in the First Free Living Wolf (Canis lupus Linnaeus, 1758) Found Dead in the Friuli Venezia Giulia Region. MLST, PCR
60  2021 Environmental Surveillance and Characterization of Antibiotic Resistant Staphylococcus aureus at Coastal Beaches and Rivers on the Island of Hawai'i. CC, MLST, MRSA, MSSA, WGS
61  2021 Epidemic Potential of Escherichia coli O16:H41-ST131: Compared with Pandemic O25b:H30-ST131 Lineage. E. coli
62  2021 Epidemiological typing of methicillin resistant Staphylococcus aureus recovered from patients attending a maternity hospital in Ireland 2014-2019. NMRSARL
63  2021 Epidemiology of the Staphylococcus aureus CA-MRSA USA300 in Belgium. ACME, MRSA, NA, PVL
64  2021 ESBL-producing Klebsiella pneumoniae in a University hospital: Molecular features, diffusion of epidemic clones and evaluation of cross-transmission. ---
65  2021 Evolution of Sequence Type 4821 Clonal Complex Hyperinvasive and Quinolone-Resistant Meningococci. IMD
66  2021 Exotic dried fruits caused Salmonella Agbeni outbreak with severe clinical presentation, Norway, December 2018 to March 2019. CT, WGS
67  2021 Feedborne Salmonella enterica Serovar Jerusalem Outbreak in Different Organic Poultry Flocks in Switzerland and Italy Linked to Soya Expeller. WGS
68  2021 Feline Otitis Externa Caused by Methicillin-Resistant Staphylococcus aureus with Mixed Hemolytic Phenotype and Overview of Possible Genetic Backgrounds. AST, MRSA, OE, WGS
69  2021 First genome sequence of Aeromonas hydrophilia novel sequence type 658 strain isolated from livestock in South Africa. WGS
70  2021 First report of cryptococcosis due to Cryptococcus gattii sensu stricto VGI in an Ivorian HIV negative patient. CSF, MLST
71  2021 Frequency, Local Dynamics, and Genomic Characteristics of ESBL-Producing Escherichia coli Isolated From Specimens of Hospitalized Horses. 5DG, EC, ESBL, P/G, PAP, SSG
72  2021 Function and distribution of the conjugative plasmid pLM1686 in foodborne Listeria monocytogenes in China. ---
73  2021 Genetic and phenotypic diversity of methicillin-resistant Staphylococcus aureus among Japanese inpatients in the early 1980s. HA-MRSA, MSSA, SCCmec
74  2021 Genetic diversity and pathogenic potential of Shiga toxin-producing Escherichia coli (STEC) derived from German flour. STEC, VAGs, WGS
75  2021 Genetic relatedness of multidrug resistant Escherichia coli isolated from humans, chickens and poultry environments. AMR, E. coli, LBM, MDR, MLST, SNPs, WGS
76  2021 Genome Analysis of a Historical Shigella dysenteriae Serotype 1 Strain Carrying a Conserved Stx Prophage Region. SD1, Stx
77  2021 Genome profiling of fluoroquinolone-resistant uropathogenic Escherichia coli isolates from Brazil. UPEC, UTIs
78  2021 Genome-Based Analysis of a Sequence Type 1049 Hypervirulent Klebsiella pneumoniae Causing Bacteremic Neck Abscess. hvKP, KL
79  2021 Genome-wide methylome analysis of two strains belonging to the hypervirulent Neisseria meningitidis serogroup W ST-11 clonal complex. SMRT
80  2021 Genomic Analysis of Antibiotic-Resistant and -Susceptible Escherichia coli Isolated from Bovine Sources in Maputo, Mozambique. ARGs, ST Cplxs
81  2021 Genomic and Phenotypic Analysis of Linezolid-Resistant Staphylococcus epidermidis in a Tertiary Hospital in Innsbruck, Austria. ---
82  2021 Genomic characterization of carbapenem-non-susceptible Pseudomonas aeruginosa in Singapore. CNPA
83  2021 Genomic data reveals the emergence of an IncQ1 small plasmid carrying blaKPC-2 in Escherichia coli of the pandemic sequence type 648. SNPs
84  2021 Genomic epidemiology of group B streptococci spanning 10 years in an Irish maternity hospital, 2008-2017. CC, cgMLST, GBS
85  2021 Genomic evolution and virulence association of Clostridioides difficile sequence type 37 (ribotype 017) in China. ---
86  2021 Genomic features and antimicrobial resistance patterns of Shiga toxin-producing Escherichia coli strains isolated from food in Chile. LAA, STEC
87  2021 Genomic surveillance, characterization and intervention of a polymicrobial multidrug-resistant outbreak in critical care. CRAB, MDR, WGS
88  2021 Genotypic diversity of Iranian Cryptococcus neoformans using multilocus sequence typing (MLST) and susceptibility to antifungals. MLST
89  2021 Global prevalence and molecular characterization of extended-spectrum β-lactamase producing-Escherichia coli in dogs and cats - A scoping review and meta-analysis. AMR, ESBL-E. coli
90  2021 Group B streptococcal colonization in elderly women. GBS
91  2021 High-risk clones of extended-spectrum β-lactamase-producing Klebsiella pneumoniae isolated from the University Hospital Establishment of Oran, Algeria (2011-2012). ARGs, CRISPR-Cas, ESBL-KP, MLST, PFGE, PMQR, WGS
92  2021 Identification, HPG2 Sequence Analysis, and Antimicrobial Susceptibility of Avibacterium paragallinarum Isolates Obtained from Outbreaks of Infectious Coryza in Commercial Layers in Sonora State, Mexico. AVP, IC, MIC
93  2021 Infection with capsular genotype K1-ST23 hypervirulent Klebsiella pneumoniae isolates in Japan after a stay in East Asia: Two cases and a literature review. hvKp
94  2021 Insights about the epidemiology of Salmonella Typhimurium isolates from different sources in Brazil using comparative genomics. S. Typhimurium, SNP
95  2021 Institutional outbreak involving multiple clades of IMP-producing Enterobacter cloacae complex sequence type 78 at a cancer center in Tokyo, Japan. ECC, SNP
96  2021 Large Increase in Azithromycin-Resistant Neisseria gonorrhoeae in Northern Spain. MSM
97  2021 Longitudinal non-cystic fibrosis trends of pulmonary Mycobacterium abscessus disease from 2010 to 2017: spread of the "globally successful clone" in Asia. CF, MAB, MAB-A, MAB-B, MAB-m
98  2021 Meningitis and brain abscess formation caused by Cronobacter malonaticus sequence type 440 in a full-term neonate. ---
99  2021 Methicillin-Resistant Staphylococcus aureus Clonal Complex 398 as a Major MRSA Lineage in Dogs and Cats in Thailand. CC, MRSA, SCCmec
100  2021 Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home. MDROs