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■ Abbreviation / Long Form : TRAP / trp RNA-binding attenuation protein

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Total Number of Papers: 68
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Abbreviation:   TRAP  (>> Co-occurring Abbreviation)
Long Form:   trp RNA-binding attenuation protein
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No. Year Title Co-occurring Abbreviation
2021 Applications of isothermal titration calorimetry in pure and applied research from 2016 to 2020. ITC, PROTACS
2020 Population Distributions from Native Mass Spectrometry Titrations Reveal Nearest-Neighbor Cooperativity in the Ring-Shaped Oligomeric Protein TRAP. MS, NMR, nMS, Trp
2017 Enhancing titres of therapeutic viral vectors using the transgene repression in vector production (TRiP) system. TRiP
2017 Identification of a Residue (Glu60) in TRAP Required for Inducing Efficient Transcription Termination at the trp Attenuator Independent of Binding Tryptophan and RNA. Trp
2016 RNA protects a nucleoprotein complex against radiation damage. ---
2015 Characterization of TRAP-mediated regulation of the B. subtilis trp operon using in vitro transcription and transcriptional reporter fusions in vivo. ---
2015 Mechanistic Analysis of Activation of the Innate Immune Sensor PKR by Bacterial RNA. 5'-UTR, protein kinase R
2015 Probing structural dynamics of an artificial protein cage using high-speed atomic force microscopy. HS-AFM
2014 Gene regulation by substoichiometric heterocomplex formation of undecameric TRAP and trimeric anti-TRAP. AT
10  2014 Modulating TRAP-mediated transcription termination by AT during transcription of the leader region of the Bacillus subtilis trp operon. AT
11  2013 Homotropic cooperativity from the activation pathway of the allosteric ligand-responsive regulatory trp RNA-binding attenuation protein. Trp
12  2012 Influence of structural symmetry on protein dynamics. MD
13  2011 Mechanisms of allosteric gene regulation by NMR quantification of microsecond-millisecond protein dynamics. MRD, NMR
14  2010 Bacillus licheniformis Anti-TRAP can assemble into two types of dodecameric particles with the same symmetry but inverted orientation of trimers. AT
15  2010 Crystal structure of unliganded TRAP: implications for dynamic allostery. ---
16  2010 Mechanism for pH-dependent gene regulation by amino-terminus-mediated homooligomerization of Bacillus subtilis anti-trp RNA-binding attenuation protein. AT, fAT
17  2010 TRAP binding to the Bacillus subtilis trp leader region RNA causes efficient transcription termination at a weak intrinsic terminator. RNAP
18  2009 RNA and protein complexes of trp RNA-binding attenuation protein characterized by mass spectrometry. AT, ESI-MS
19  2009 The nature of the TRAP-Anti-TRAP complex. ---
20  2008 Alanine scanning mutagenesis of anti-TRAP (AT) reveals residues involved in binding to TRAP. AT, trp
21  2008 Function of the Bacillus subtilis transcription elongation factor NusG in hairpin-dependent RNA polymerase pausing in the trp leader. RNAP
22  2008 Insights into activation and RNA binding of trp RNA-binding attenuation protein (TRAP) through all-atom simulations. ---
23  2007 Dynamic allostery in the ring protein TRAP. ---
24  2007 The rate of TRAP binding to RNA is crucial for transcription attenuation control of the B. subtilis trp operon. ---
25  2006 Different modes and potencies of translational repression by sequence-specific RNA-protein interaction at the 5'-UTR. 5'-UTR, CFP, IRES, YFP
26  2006 Rounding up: Engineering 12-membered rings from the cyclic 11-mer TRAP. ---
27  2006 The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding. ---
28  2006 Thermodynamics of tryptophan-mediated activation of the trp RNA-binding attenuation protein. DSC, ITC
29  2005 Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction. AT
30  2005 Effects of tryptophan starvation on levels of the trp RNA-binding attenuation protein (TRAP) and anti-TRAP regulatory protein and their influence on trp operon expression in Bacillus subtilis. AT
31  2004 Cellular levels of trp RNA-binding attenuation protein in Bacillus subtilis. ---
32  2004 Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP. AT
33  2004 Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: the Bacillus subtilis TRAP protein. ---
34  2004 Sensing complex regulatory networks by conformationally controlled hairpin ribozymes. ---
35  2004 The interaction of RNA with TRAP: the role of triplet repeats and separating spacer nucleotides. ---
36  2003 A Mg2+-dependent RNA tertiary structure forms in the Bacillus subtilis trp operon leader transcript and appears to interfere with trpE translation control by inhibiting TRAP binding. ---
37  2003 Characterization of a trp RNA-binding attenuation protein (TRAP) mutant with tryptophan independent RNA binding activity. trp, WT
38  2003 Tandem transcription and translation regulatory sensing of uncharged tryptophan tRNA. AT
39  2002 Creating hetero-11-mers composed of wild-type and mutant subunits to study RNA binding to TRAP. ---
40  2002 Influence of induced fit in the interaction of Bacillus subtilis trp RNA-binding attenuator protein and its RNA antiterminator target oligomer. NMR
41  2002 NusA-stimulated RNA polymerase pausing and termination participates in the Bacillus subtilis trp operon attenuation mechanism invitro. ---
42  2002 Specificity of TRAP-RNA interactions: crystal structures of two complexes with different RNA sequences. ---
43  2002 The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT, recognizes the tryptophan-activated RNA binding domain of the TRAP regulatory protein. Anti-TRAP, AT
44  2002 TROSY-NMR studies of the 91kDa TRAP protein reveal allosteric control of a gene regulatory protein by ligand-altered flexibility. TROSY
45  2002 Zinc is required for assembly and function of the anti-trp RNA-binding attenuation protein, AT. AT
46  2001 Expression of the Bacillus subtilis trpEDCFBA operon is influenced by translational coupling and Rho termination factor. SD
47  2001 Posttranscription initiation control of tryptophan metabolism in Bacillus subtilis by the trp RNA-binding attenuation protein (TRAP), anti-TRAP, and RNA structure. ---
48  2001 The mechanism of RNA binding to TRAP: initiation and cooperative interactions. ---
49  2000 A Bacillus subtilis operon containing genes of unknown function senses tRNATrp charging and regulates expression of the genes of tryptophan biosynthesis. Trp
50  2000 Effects of mutations in the L-tryptophan binding pocket of the Trp RNA-binding attenuation protein of Bacillus subtilis. ---
51  2000 trp RNA-binding attenuation protein-5' stem-loop RNA interaction is required for proper transcription attenuation control of the Bacillus subtilis trpEDCFBA operon. ---
52  1999 A 5' RNA stem-loop participates in the transcription attenuation mechanism that controls expression of the Bacillus subtilis trpEDCFBA operon. ---
53  1999 Probing the TRAP-RNA interaction with nucleoside analogs. ---
54  1999 Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA. ---
55  1998 RNA structure inhibits the TRAP (trp RNA-binding attenuation protein)-RNA interaction. ---
56  1998 trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis. ---
57  1997 Alanine-scanning mutagenesis of Bacillus subtilis trp RNA-binding attenuation protein (TRAP) reveals residues involved in tryptophan binding and RNA binding. ---
58  1997 The trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis binds to unstacked trp leader RNA. ---
59  1997 The trp RNA-binding attenuation protein (TRAP) regulates the steady-state levels of transcripts of the Bacillus subtilis folate operon. LysS
60  1997 The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis. ---
61  1996 A temperature-sensitive trpS mutation interferes with trp RNA-binding attenuation protein (TRAP) regulation of trp gene expression in Bacillus subtilis. Trp
62  1996 Interaction of the trp RNA-Binding attenuation protein (TRAP) of Bacillus subtilis with RNA: effects of the number of GAG repeats, the nucleotides separating adjacent repeats, and RNA secondary structure. ---
63  1996 Kinetic and thermodynamic analysis of the interaction between TRAP (trp RNA-binding attenuation protein) of Bacillus subtilis and trp leader RNA. ---
64  1995 Interaction of the 11-subunit trp RNA-binding attenuation protein (TRAP) with its RNA target. ---
65  1995 The mtrB gene of Bacillus pumilus encodes a protein with sequence and functional homology to the trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis. ---
66  1995 Translation of trpG in Bacillus subtilis is regulated by the trp RNA-binding attenuation protein (TRAP). ---
67  1995 trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon. ---
68  1994 11-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis. ---