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■ Abbreviation / Long Form : phyA / phytochrome A

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Total Number of Papers: 243
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Abbreviation:   phyA  (>> Co-occurring Abbreviation)
Long Form:   phytochrome A
 Abbreviation Variation
 Long Form Variation
 Pair(Abbreviation/Long Form) Variation
No. Year Title Co-occurring Abbreviation
2022 Analysis of Phytochrome-Dependent Seed Germination in Arabidopsis. LFR, VLFR
2022 Arabidopsis Circadian Clock Repress Phytochrome a Signaling. CCA1, FR, TOC1
2022 Arabidopsis Phytochromes A and B Synergistically Repress SPA1 under Blue Light. COP1, HY5, SPA1
2022 Genome-Wide Identification and Expression of FAR1 Gene Family Provide Insight Into Pod Development in Peanut (Arachis hypogaea). FAR1, qRT-PCR
2022 Phylogenetic analysis of phytochrome A gene from Lablab purpureus (L.) Sweet. FR, LprPHYA3
2022 Physiological Analysis of Phototropic Responses to Blue and Red Light in Arabidopsis. ---
2022 Phytochrome A in plants comprises two structurally and functionally distinct populations - water-soluble phyA' and amphiphilic phyA″. HIRs, LFRs, VLFRs
2022 TIME FOR COFFEE regulates phytochrome A-mediated hypocotyl growth through dawn-phased signaling. TIC, TPL
2021 Identification of the specific long-noncoding RNAs involved in night-break mediated flowering retardation in Chenopodium quinoa. CO, CRY1, ELF3, HY5, LHY, lncRNAs, NB, RAV1, SDPs, TSF
10  2021 Mutual upregulation of HY5 and TZP in mediating phytochrome A signaling. COP1, FR, HY5
11  2021 Phytochrome A elevates plant circadian-clock components to suppress shade avoidance in deep-canopy shade. ELF3, PAR, PRR7, TOC1
12  2021 Red light-induced structure changes in phytochrome A from Pisum sativum. LphyA
13  2021 The phosphatase/kinase balance affects phytochrome A and its native pools, phyA' and phyA″, in etiolated maize roots: evidence from the induction of phyA' destruction by a protein phosphatase inhibitor sodium fluoride. OA and CA, PP
14  2020 JA modulates phytochrome a signaling via repressing FHY3 activity by JAZ proteins. FR, JA
15  2020 Medicago PHYA promotes flowering, primary stem elongation and expression of flowering time genes in long days. CO-LIKE, FLC, FT-LIKE, FUL-LIKE, GI, LD, MAF, MtE1L, TOC1a
16  2020 MYB30 Is a Key Negative Regulator of Arabidopsis Photomorphogenic Development That Promotes PIF4 and PIF5 Protein Accumulation in the Light. FR, phyB, PIFs
17  2020 Phytochrome A and its Functional Manifestations in Etiolated and Far-red Light-grown Seedlings of the Wild-type Rice and its Hebiba and Cpm2 Mutants Deficient in the Defense-related Phytohormone Jasmonic Acid. JA, WT
18  2020 Reversible SUMOylation of FHY1 Regulates Phytochrome A Signaling in Arabidopsis. ASP1, FHY1, FR
19  2020 Self-transcriptional repression of the Arabidopsis NAC transcription factor ATAF2 and its genetic interaction with phytochrome A in modulating seedling photomorphogenesis. BR, CCA1, CRY1, NAC, phyB, TF
20  2020 To bloom once or more times: the reblooming mechanisms of Iris germanica revealed by transcriptome profiling. ARF, DEGs, GI, GO, KEGG, SVP
21  2019 Arabidopsis FHY1 and FHY1-LIKE Are Not Required for Phytochrome A Signal Transduction in the Nucleus. FHL, FHY1
22  2019 Characterization of phytochrome C functions in the control of de-etiolation and agronomic traits in rice. aabb, FR
23  2019 Photoreceptor Activity Contributes to Contrasting Responses to Shade in Cardamine and Arabidopsis Seedlings. ---
24  2019 Phytochrome A Regulates Carbon Flux in Dark Grown Tomato Seedlings. TCA
25  2019 Regulation of Chlorophyll Biogenesis by Phytochrome A. Chl
26  2019 The dephosphorylated S8A and S18A mutants of (oat) phytochrome A comprise its two species, phyA' and phyA'', suggesting that autophosphorylation at these sites is not involved in the phyA differentiation. ---
27  2019 The role of phytochromes in Nicotiana tabacum against Chilli veinal mottle virus. ChiVMV, phyB, TBARS, WT
28  2018 Arabidopsis phytochrome A nuclear translocation is mediated by a far-red elongated hypocotyl 1-importin complex. FHL, FHY1, FR, NLS, Pfr
29  2018 Dawn and photoperiod sensing by phytochrome A. ---
30  2018 Hinge region of Arabidopsis phyA plays an important role in regulating phyA function. ---
31  2018 Long-Day Photoperiod Enhances Jasmonic Acid-Related Plant Defense. cop1, CRY1, LD, SD
32  2018 Phytochrome A and B Negatively Regulate Salt Stress Tolerance of Nicotiana tobacum via ABA-Jasmonic Acid Synergistic Cross-Talk. ABA, EL, JA, MDA, MeJA, phyAB, phyB, WT
33  2018 TANDEM ZINC-FINGER/PLUS3 Is a Key Component of Phytochrome A Signaling. FHY1, FR
34  2018 Two native types of phytochrome A, phyA' and phyA", differ by the state of phosphorylation at the N-terminus as revealed by fluorescence investigations of the Ser/Ala mutant of rice phyA expressed in transgenic Arabidopsis. WL
35  2017 A laboratory simulation of Arabidopsis seed dormancy cycling provides new insight into its regulation by clock genes and the dormancy-related genes DOG1, MFT, CIPK23 and PHYA. CIPK23, DOG1, MFT
36  2017 Light Controls Cytokinin Signaling via Transcriptional Regulation of Constitutively Active Sensor Histidine Kinase CKI1. CKI1, HY1, LPH, MSP, TF
37  2017 Molecular mechanisms and ecological function of far-red light signalling. FHL, FHY1, PIF
38  2017 Phytochrome A Negatively Regulates the Shade Avoidance Response by Increasing Auxin/Indole Acidic Acid Protein Stability. SARs
39  2016 Characterizing Two Inter-specific Bin Maps for the Exploration of the QTLs/Genes that Confer Three Soybean Evolutionary Traits. AP2
40  2016 Deficiency in phytochrome A alters photosynthetic activity, leaf starch metabolism and shoot biomass production in tomato. ---
41  2015 In Vivo Assessment of Cold Tolerance through Chlorophyll-a Fluorescence in Transgenic Zoysiagrass Expressing Mutant Phytochrome A. ---
42  2015 Light-activated phytochrome A and B interact with members of the SPA family to promote photomorphogenesis in Arabidopsis by reorganizing the COP1/SPA complex. COP1, phyB, SPA
43  2015 Lysine 206 in Arabidopsis phytochrome A is the major site for ubiquitin-dependent protein degradation. ---
44  2015 Molecular mechanisms for mediating light-dependent nucleo/cytoplasmic partitioning of phytochrome photoreceptors. FHL, FHY1, NLSs, phyB
45  2015 Multifaceted roles of FHY3 and FAR1 in light signaling and beyond. ABA, FAR1, FHY3, FR, FRS, ROS
46  2015 Phosphorylation of CONSTANS and its COP1-dependent degradation during photoperiodic flowering of Arabidopsis. CO, COP1, CRY1, CRY2
47  2015 Photoreceptor Specificity in the Light-Induced and COP1-Mediated Rapid Degradation of the Repressor of Photomorphogenesis SPA2 in Arabidopsis. CRY1, CRY2
48  2015 Phytochrome A and B Function Antagonistically to Regulate Cold Tolerance via Abscisic Acid-Dependent Jasmonate Signaling. ABA, CBF, FR, JA
49  2015 Role of phytochromes A and B in the regulation of cell death and acclimatory responses to UV stress in Arabidopsis thaliana. phyB
50  2015 Systematic analysis of how phytochrome B dimerization determines its specificity. NBs
51  2014 Accumulation of TIP2;2 Aquaporin during Dark Adaptation Is Partially PhyA Dependent in Roots of Arabidopsis Seedlings. ---
52  2014 Arabidopsis Phytochrome A Directly Targets Numerous Promoters for Individualized Modulation of Genes in a Wide Range of Pathways. FR
53  2014 HUA ENHANCER1 is involved in posttranscriptional regulation of positive and negative regulators in Arabidopsis photomorphogenesis. CRY1, HEN1, HY5
54  2014 Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. CRY1, DFR, JA, LDOX, MeJA, phyB, UF3GT
55  2014 Photoreceptor partner FHY1 has an independent role in gene modulation and plant development under far-red light. FHY1, FR
56  2014 Phytochrome A antagonizes PHYTOCHROME INTERACTING FACTOR 1 to prevent over-activation of photomorphogenesis. PIF1, WT
57  2014 Shedding (far-red) light on phytochrome mechanisms and responses in land plants. FR, FR-HIRs
58  2013 An evolutionarily conserved signaling mechanism mediates far-red light responses in land plants. FR, HIRs
59  2013 Arabidopsis phytochrome B promotes SPA1 nuclear accumulation to repress photomorphogenesis under far-red light. COP1, FR, HY5, SPA1
60  2013 Both PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2 promote seedling photomorphogenesis in multiple light signaling pathways. COP1, HFR1, HY5, PAR1
61  2013 Conditional involvement of constitutive photomorphogenic1 in the degradation of phytochrome A. COP1, SPA
62  2013 Light perception and signalling by phytochrome A. FHY1, HIR, VLFRs
63  2013 Temperature, light and nitrate sensing coordinate Arabidopsis seed dormancy cycling, resulting in winter and summer annual phenotypes. CIPK23, DOG1, GA3ox1, MFT, NRT1.1
64  2013 Three transcription factors, HFR1, LAF1 and HY5, regulate largely independent signaling pathways downstream of phytochrome A. bHLH, bZIP
65  2013 Transcriptional programs related to phytochrome A function in Arabidopsis seed germination. FR, phyB
66  2012 A short amino-terminal part of Arabidopsis phytochrome A induces constitutive photomorphogenic response. ---
67  2012 Arabidopsis phytochrome a is modularly structured to integrate the multiple features that are required for a highly sensitized phytochrome. FR, FR-HIR, N-PAS, PHY
68  2012 Degradation of Arabidopsis CRY2 is regulated by SPA proteins and phytochrome A. CRY2, SPA
69  2012 FHY3 promotes shoot branching and stress tolerance in Arabidopsis in an AXR1-dependent manner. FHY3, rev
70  2012 Light and abscisic acid signalling are integrated by MIZ1 gene expression and regulate hydrotropic response in roots of Arabidopsis thaliana. ABA
71  2012 Nuclear phytochrome A signaling promotes phototropism in Arabidopsis. PKS1, RPT2
72  2012 Overexpression of phytochrome A and its hyperactive mutant improves shade tolerance and turf quality in creeping bentgrass and zoysiagrass. SARs
73  2012 Phosphorylation of FAR-RED ELONGATED HYPOCOTYL1 is a key mechanism defining signaling dynamics of phytochrome A under red and far-red light in Arabidopsis. FHY1, FR
74  2012 Phytochrome A increases tolerance to high evaporative demand. WT
75  2012 Phytochrome signaling mechanisms. COP1, FHL, FHY1, FR, PIFs
76  2012 Protein phosphatase activity and acidic/alkaline balance as factors regulating the state of phytochrome A and its two native pools in the plant cell. ---
77  2012 Solid-state NMR spectroscopic study of chromophore-protein interactions in the Pr ground state of plant phytochrome A. ---
78  2012 The cyclophilin ROC1 links phytochrome and cryptochrome to brassinosteroid sensitivity. CRY1, phyB
79  2012 The mediator complex subunit PFT1 interferes with COP1 and HY5 in the regulation of Arabidopsis light signaling. PFT1
80  2011 Genes Encoding Callose Synthase and Phytochrome A Are Adjacent to a MAP3Kalpha-Like Gene in Beta vulgaris US H20. ---
81  2011 Light inputs shape the Arabidopsis circadian system. FR
82  2011 Metabolite Signature during Short-Day Induced Growth Cessation in Populus. PHYAOX
83  2011 Missense mutation in the amino terminus of phytochrome A disrupts the nuclear import of the photoreceptor. ---
84  2011 Photoconversion and nuclear trafficking cycles determine phytochrome A's response profile to far-red light. ---
85  2011 Phytochrome A-specific signaling in Arabidopsis thaliana. ---
86  2011 Rapid and reversible light-mediated chromatin modifications of Arabidopsis phytochrome A locus. ---
87  2010 A glutathione S-transferase regulated by light and hormones participates in the modulation of Arabidopsis seedling development. ABA, GSTs
88  2010 Alteration of PHYA expression change circadian rhythms and timing of bud set in Populus. PttPHYA
89  2010 Arabidopsis transcription factor ELONGATED HYPOCOTYL5 plays a role in the feedback regulation of phytochrome A signaling. FAR1, FHL, FHY1, HY5
90  2010 Autophosphorylation desensitizes phytochrome signal transduction. NTE
91  2010 Functional characterization of phytochrome autophosphorylation in plant light signaling. GFP, NTE, SAPs
92  2010 Jasmonate and phytochrome A signaling in Arabidopsis wound and shade responses are integrated through JAZ1 stability. COI1, FR, JA, JAZ1-GUS
93  2010 Light-regulated nuclear import and degradation of Arabidopsis phytochrome-A N-terminal fragments. DD, FR-HIR, NES, NLS, VLFR, YFP
94  2010 Luciferase and green fluorescent protein reporter genes as tools to determine protein abundance and intracellular dynamics. GFP
95  2010 Subcellular sites of the signal transduction and degradation of phytochrome A. FR-HIR, GFP
96  2010 Two coordinately regulated homologs of FLOWERING LOCUS T are involved in the control of photoperiodic flowering in soybean. FT, LD, SD
97  2009 Adaptive evolution involving gene duplication and insertion of a novel Ty1/copia-like retrotransposon in soybean. ---
98  2009 FAR-RED ELONGATED HYPOCOTYL1 and FHY1-LIKE associate with the Arabidopsis transcription factors LAF1 and HFR1 to transmit phytochrome A signals for inhibition of hypocotyl elongation. FHL, FHY1, HFR1, LAF1
99  2009 Heterotrimeric G-protein is involved in phytochrome A-mediated cell death of Arabidopsis hypocotyls. FR, G protein, ROS, WL, WT
100  2009 Mutation scanning and genotyping by high-resolution DNA melting analysis in olive germplasm. HRM