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Abbreviation : ChIP
Long Form : chromatin immunoprecipitation
No. Year Title Co-occurring Abbreviation
2022 Chromatin Immunoprecipitation Assays on Medulloblastoma Cell Line DAOY. MB
2022 Corticosterone-mediated regulation and functions of miR-218-5p in rat brain. CORT, GO, GR, MDD, miRNAs, PFC, RISC-IP
2022 CTPS1 promotes malignant progression of triple-negative breast cancer with transcriptional activation by YBX1. CTPS1, DFS, IHC, OS, TNBC, YBX1
2022 Curcumin improves atherosclerosis by inhibiting the epigenetic repression of lncRNA MIAT to miR-124. EZH2, HFD, HUVECs, LDL, MIAT, qRT-PCR
2022 Epigenetic regulation of ferroptosis via ETS1/miR-23a-3p/ACSL4 axis mediates sorafenib resistance in human hepatocellular carcinoma. ETS1, HCC, miRNAs, UTR
2022 HMGA2 facilitates colorectal cancer progression via STAT3-mediated tumor-associated macrophage recruitment. AOM, CRC, DSS, HMGA2, STAT3, TAMs
2022 Knockdown of hypoxia-inducible factor 1-alpha (HIF1α) interferes with angiopoietin-like protein 2 (ANGPTL2) to attenuate high glucose-triggered hypoxia/reoxygenation injury in cardiomyocytes. ANGPTL2, CCK-8, HG, HIF1A, HIF1alpha, HO-1, LDH, Nrf2
2022 LncRNA FOXP4-AS1 Promotes the Progression of Esophageal Squamous Cell Carcinoma by Interacting With MLL2/H3K4me3 to Upregulate FOXP4. ESCC, IHC, lncRNAs, qRT-PCR, RIP
2022 SUMOylation inhibition enhances dexamethasone sensitivity in multiple myeloma. DEX, GR, MM
10  2022 The suppression of pancreatic lipase-related protein 2 ameliorates experimental hepatic fibrosis in mice. BDL, HSCs, REs, SAH, SAM
11  2022 YBX1 Enhances Metastasis and Stemness by Transcriptionally Regulating MUC1 in Lung Adenocarcinoma. MUC1, YBX1
12  2021 A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells. mAbs, PBM, PCRP, TFs
13  2021 A Comprehensive Toolbox to Analyze Enhancer-Promoter Functions. NGS, RNAPII, TFs
14  2021 A direct negative feedback loop of miR-4721/FOXA1/Nanog promotes nasopharyngeal cell stem cell enrichment and metastasis. CSCs, EMSA, NPC, SP
15  2021 A genome-wide association study in Chinese identifies novel risk loci for Behcet's uveitis. BD, GWAS
16  2021 A maternal low-protein diet during gestation induces hepatic autophagy-related gene expression in a sex-specific manner in Sprague-Dawley rats. ATF4, CHOP
17  2021 A Pioneer Transcription Factor and Type I Nuclear Hormone Receptors Synergistically Activate the Bovine Herpesvirus 1 Infected Cell Protein 0 (ICP0) Early Promoter. bICP0, BoHV-1, ICP0, KLF4, NHR, NHRs
18  2021 Aberrant activation of the Hedgehog signaling pathway in granulosa cells from patients with polycystic ovary syndrome. GCs, Hh, NT, PCOS, PT
19  2021 Aberrant epigenetic alteration of PAX1 expression contributes to parathyroid tumorigenesis. BSP, PAX1, PHPT
20  2021 ACOX1, regulated by C/EBPα and miR-25-3p, promotes bovine preadipocyte adipogenesis. ACOX1, EMSA
21  2021 Activating AhR alleviates cognitive deficits of Alzheimer's disease model mice by upregulating endogenous Aβ catabolic enzyme Neprilysin. AhR, CNS, I3C, L-KN, NEP
22  2021 Activation of the clock gene TIMELESS by H3k27 acetylation promotes colorectal cancer tumorigenesis by binding to Myosin-9. CBP, CRC
23  2021 Acylglycerol kinase promotes paclitaxel resistance in nasopharyngeal carcinoma cells by regulating FOXM1 via the JAK2/STAT3 pathway. AGK, NPC
24  2021 Aged neutrophils form mitochondria-dependent vital NETs to promote breast cancer lung metastasis. Co-IP, NETs, TEM
25  2021 ALYREF Drives Cancer Cell Proliferation Through an ALYREF-MYC Positive Feedback Loop in Glioblastoma. ALYREF, CLIP, GBM, GTEx, KEGG, MYC, RBPs
26  2021 AMPK protects against alcohol-induced liver injury through UQCRC2 to up-regulate mitophagy. ALD, AMPK, KD, OE, ROS
27  2021 An optimized two-step chromatin immunoprecipitation protocol to quantify the associations of two separate proteins and their common target DNA. ---
28  2021 Analysis of transcriptional regulators HpaR1 and Clp regulating the expression of glycoside hydrolase-encoding gene in the Xanthomonas campestris pv. campestris. EMSA, HR, Xcc
29  2021 Androgen receptor transactivates KSHV noncoding RNA PAN to promote lytic replication-mediated oncogenesis: A mechanism of sex disparity in KS. AR, DHT, EMSA, KS, KSHV, PAN, PCR
30  2021 Angiotensin II promotes EMT of hepatocellular carcinoma cells through high mobility group protein B1 mediated by E4F1. NC, si, TFs
31  2021 Anti-metastatic effect of GV1001 on prostate cancer cells; roles of GnRHR-mediated Galphas-cAMP pathway and AR-YAP1 axis. AR, Co-IP, EMT, GnRHR, IF, PCa
32  2021 Antithetic hTERT Regulation by Androgens in Prostate Cancer Cells: hTERT Inhibition Is Mediated by the ING1 and ING2 Tumor Suppressors. AR, BAT, CRPC, nARE, PCa, SAL
33  2021 Arabidopsis SUMO E3 Ligase SIZ1 Interacts with HDA6 and Negatively Regulates HDA6 Function during Flowering. FLC, HDA6, HDAC, MAF4, PTM, SIZ1, SUMO
34  2021 Arabidopsis thaliana Mature Endosperm Dissection and Isolation of Genomic DNA from MatureSeed Tissues. ---
35  2021 Aryl hydrocarbon receptor is essential for the pathogenesis of pulmonary arterial hypertension. AhR, PAH, PH
36  2021 ATF4-mediated GDF15 suppresses LPS-induced inflammation and MUC5AC in human nasal epithelial cells through the PI3K/Akt pathway. GDF15, HNEpCs
37  2021 AtMYB32 regulates the ABA response by targeting ABI3, ABI4 and ABI5 and the drought response by targeting CBF4 in Arabidopsis. ABA, ABI3, CBF4, EMSAs
38  2021 B-Myb participated in ionizing radiation-induced apoptosis and cell cycle arrest in human glioma cells. IP, IR
39  2021 Base-resolution models of transcription-factor binding reveal soft motif syntax. CRISPR, TF
40  2021 Behavioral sensitization induced by methamphetamine causes differential alterations in gene expression and histone acetylation of the prefrontal cortex in rats. GO, KEGG, METH, PFC
41  2021 BET proteins are associated with the induction of small airway fibrosis in COPD. ASM, BET, ECM, HAT, HDAC, TGF-beta1
42  2021 Bile acids increase intestinal marker expression via the FXR/SNAI2/miR-1 axis in the stomach. BA, DCA, GC, IHC, IM, IPA, qRT-PCR
43  2021 Bmp Signaling Regulates Hand1 in a Dose-Dependent Manner during Heart Development. bHLH, BMP, OFT
44  2021 BRCA1 Antibodies Matter. Abs, BRCA1, IF, IP, IP-MS, MEFs, WB
45  2021 BRD4 PROTAC degrader ARV-825 inhibits T-cell acute lymphoblastic leukemia by targeting 'Undruggable' Myc-pathway genes. BET, PI, T-ALL
46  2021 c-Myc affects hedgehog pathway via KCNQ1OT1/RAC1: A new mechanism for regulating HSC proliferation and epithelial-mesenchymal transition. HE, HSCs
47  2021 Ca14-3-3 Interacts With CaWRKY58 to Positively Modulate Pepper Response to Low-Phosphorus Starvation. BiFC, Ca14-3-3, EMSA, LPS, MST, PHR1, VIGS
48  2021 CBX7 suppresses urinary bladder cancer progression via modulating AKR1B10-ERK signaling. AKR1B10, CBX, CBX7, UBC
49  2021 Cdc25B is transcriptionally inhibited by IER5 through the NF-YB transcription factor in irradiation-treated HeLa cells. CC
50  2021 CDCA7 Facilitates Tumor Progression by Directly Regulating CCNA2 Expression in Esophageal Squamous Cell Carcinoma. ESCC
51  2021 Cell Proliferation and Tumor Induction by Ochratoxin A in Mouse Skin and Evaluation of Cyclin D1 and Cyclooxygenase-2 Expressions. NF-kappaB, OTA, RT-PCR
52  2021 Cells Lacking PA200 Adapt to Mitochondrial Dysfunction by Enhancing Glycolysis via Distinct Opa1 Processing. ---
53  2021 Characterization of expansin genes and their transcriptional regulation by histone modifications in strawberry. EXPs
54  2021 Chemotherapy-elicited exosomal miR-378a-3p and miR-378d promote breast cancer stemness and chemoresistance via the activation of EZH2/STAT3 signaling. BC, CCK-8, DKK3, DOX, EZH2, pCR, PTX, STAT3
55  2021 Chidamide triggers BTG1-mediated autophagy and reverses the chemotherapy resistance in the relapsed/refractory B-cell lymphoma. HDAC, RRCL
56  2021 ChIP-qPCR for Polycomb Group Proteins During Neuronal Differentiation of Human Pluripotent Stem Cells. qPCR
57  2021 Chromatin Immunoprecipitation (ChIP) to Assess Histone Marks in Auxin-treated Arabidopsis thaliana Inflorescence Tissue. ChIP-qPCR
58  2021 Chromatin Immunoprecipitation (ChIP) to Study DNA-Protein Interactions. N-ChIP
59  2021 Chromatin Immunoprecipitation and Sequencing (ChIP-seq) Optimized for Application in Caenorhabditis elegans. ChIP-seq
60  2021 Chromatin immunoprecipitation of transcription factors and histone modifications in Comma-Dbeta mammary epithelial cells. ChIP-seq
61  2021 Chromatin-Independent Interplay of NFATc1 and EZH2 in Pancreatic Cancer. EZH2, NFATc1, PDAC
62  2021 Chromosomal variations of Lycoris species revealed by FISH with rDNAs and centromeric histone H3 variant associated DNAs. CENH3, FISH
63  2021 Cigarette smoke extract promotes DNA methyltransferase 3a expression in dendritic cells, inducing Th-17/Treg imbalance via the c-Jun/allograft inflammatory factor 1 axis. AIF1, COPD, CSE, DCs, DNMT3A, iDCs, JNK
64  2021 circST6GALNAC6 suppresses bladder cancer metastasis by sponging miR-200a-3p to modulate the STMN1/EMT axis. BCa, circRNAs, EMT, FISH, IF, MS2-TRAP, RIP
65  2021 Claudin-7 deficiency promotes stemness properties in colorectal cancer through Sox9-mediated Wnt/beta-catenin signalling. Cldn7, Co-IP, CRC
66  2021 CO2 -responsive CCT protein interacts with 14-3-3 proteins and controls the expression of starch synthesis-related genes. ---
67  2021 Combination LSD1 and HOTAIR-EZH2 inhibition disrupts cell cycle processes and induces apoptosis in glioblastoma cells. GBM, lncRNAs, LSD1, PDX
68  2021 Combinatorial Analysis of AT-Rich Interaction Domain 1A and CD47 in Gastric Cancer Patients Reveals Markers of Prognosis. ARID1A, GC, qRT-PCR
69  2021 Combined Gene Expression and Chromatin Immunoprecipitation From a Single Mouse Hippocampus. TFs
70  2021 Combined genomic and proteomic approaches reveal DNA binding sites and interaction partners of TBX2 in the developing lung. HMG, NuRD
71  2021 COX2 Enhances Neovascularization of Inflammatory Tenocytes Through the HIF-1alpha/VEGFA/PDGFB Pathway. HIF-1alpha, LPS, PDGF-B, RAOEC, TSA, VEGFA
72  2021 Cross-talk between YAP and RAR-RXR Drives Expression of Stemness Genes to Promote 5-FU Resistance and Self-Renewal in Colorectal Cancer Cells. 5-FU, RA, RARE
73  2021 CTCF-silenced miR-137 contributes to EMT and radioresistance in esophageal squamous cell carcinoma. CTCF, EdU, EMT, ESCC, EZH2, miRNAs, PXN, qRT-PCR, RIP
74  2021 Curcumin Alleviates Abeta42-Induced Neuronal Metabolic Dysfunction via the Thrb/SIRT3 Axis and Improves Cognition in APPTG Mice. Abeta42, AD, APPTG, ATP, NADH, SIRT3, THRB
75  2021 Curcumin arrests G-quadruplex in the nuclear hyper-sensitive III1 element of c-MYC oncogene leading to apoptosis in metastatic breast cancer cells. hnRNP K, NHEIII1, TNBC
76  2021 Deacetylated Sp1 improves beta-glycerophosphate-induced calcification in vascular smooth muscle cells. ALP, alpha-SMA, Bcl-2, beta-GP, BMP-2, IP, Sp1, VC, VSMCs
77  2021 Deacetylation of FOXO4 by Sirt1 stabilizes chondrocyte extracellular matrix upon activating SOX9. CH, ECM, OA
78  2021 DEC1 negatively regulates CYP2B6 expression by binding to the CYP2B6 promoter region ascribed to IL-6-induced downregulation of CYP2B6 expression in HeLa cells. DEC1, IL-6
79  2021 Deficient H2A.Z deposition is associated with genesis of uterine leiomyoma. ATAC, HiChIP, ULs
80  2021 Detection of H3K4me3 Identifies NeuroHIV Signatures, Genomic Effects of Methamphetamine and Addiction Pathways in Postmortem HIV+ Brain Specimens that Are Not Amenable to Transcriptome Analysis. pol
81  2021 Determination of DNA lesion bypass using a ChIP-based assay. ---
82  2021 Determining the kinetics of break-induced replication (BIR) by the assay for monitoring BIR elongation rate (AMBER). AMBER, BIR, DSB, PCR
83  2021 Dexamethasone suppresses immune evasion by inducing GR/STAT3 mediated downregulation of PD-L1 and IDO1 pathways. CMap, DEGs, ICIs
84  2021 Dicer-independent snRNA/snoRNA-derived nuclear RNA 3 regulates tumor-associated macrophage function by epigenetically repressing inducible nitric oxide synthase transcription. AGO, DCs, iNOS, LNA, RT-qPCR, sdnRNAs, sRNAs, TAMs
85  2021 Dickkopf-1 promotes Vascular Smooth Muscle Cell proliferation and migration through upregulating UHRF1 during Cyclic Stretch application. AAC, DKK1, UHRF1, VSMC
86  2021 Dihydromyricetin reverses MRP2-induced multidrug resistance by preventing NF-kappaB-Nrf2 signaling in colorectal cancer cell. CRC, DMY, MDR, OXA, VCR
87  2021 DNMT1-induced miR-378a-3p silencing promotes angiogenesis via the NF-kappaB signaling pathway by targeting TRAF1 in hepatocellular carcinoma. CCK-8, DNMT1, HCC, MVD, TRAF1
88  2021 Dnmt3a is downregulated by Stat5a and mediates G0/G1 arrest by suppressing the miR-17-5p/Cdkn1a axis in Jak2V617F cells. CMPNs, GAS, qPCR
89  2021 Down-regulated microRNA-199a-3p enhances osteogenic differentiation of bone marrow mesenchymal stem cells by targeting Kdm3a in ovariectomized rats. ARS, MSCs
90  2021 Downregulation of SELENBP1 enhances oral squamous cell carcinoma chemoresistance through KEAP1-NRF2 signaling. 5-FU, OSCC, qPCR, SELENBP1, SRB, UTR
91  2021 Dysregulated MDR1 by PRDM1/Blimp1 Is Involved in the Doxorubicin Resistance of Non-Germinal Center B-Cell-Like Diffuse Large B-Cell Lymphoma. DLBCL, DOX, non-GCB, PCR
92  2021 Effect of m6A methyltransferase METTL3 -mediated MALAT1/E2F1/AGR2 axis on adriamycin resistance in breast cancer. GTEx, m6A, qRT-PCR
93  2021 Efficacy of 125I seed implantation combined with intermittent hormonal therapy on moderate- and high-risk non-metastatic prostate cancer. CRC, IRF-1, lncRNA, miR, PVT1-214, qRT-PCR
94  2021 EGCG protects against myocardial I/RI by regulating lncRNA Gm4419-mediated epigenetic silencing of the DUSP5/ERK1/2 axis. EF, EGCG, FS, I/RI, IF, RIP, TEM
95  2021 EHD3 positively regulated by NR5A1 participates in testosterone synthesis via endocytosis. EHD3
96  2021 ELF1 Transcription Factor Enhances the Progression of Glioma via ATF5 promoter. ATF5, ELF1
97  2021 ELF3 activated by a superenhancer and an autoregulatory feedback loop is required for high-level HLA-C expression on extravillous trophoblasts. ATAC-seq, EVTs, siRNAs
98  2021 ELF5 inhibits the proliferation and invasion of breast cancer cells by regulating CD24. ---
99  2021 Emetine suppresses SARS-CoV-2 replication by inhibiting interaction of viral mRNA with eIF4E. IBV, SARS-CoV-2
100  2021 Emodin Attenuated the Kidney Damage of High-Fat-Diet Mice via the Upregulation of Glucagon-Like Peptide-1 Receptor. GLP-1, LDL-C, PPARgamma