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Abbreviation : iCLIP
Long Form : individual-nucleotide resolution UV cross-linking and immunoprecipitation
No. Year Title Co-occurring Abbreviation
2022 htseq-clip: a toolset for the preprocessing of eCLIP/iCLIP datasets. eCLIP
2021 A Pipeline for Analyzing eCLIP and iCLIP Data with Htseq-clip and DEWSeq. eCLIP, RBPs, SMI
2020 iCLIP analysis of RNA substrates of the archaeal exosome. circRNAs
2020 The RNA-binding profile of the splicing factor SRSF6 in immortalized human pancreatic beta-cells. ---
2019 iCLIP data analysis: A complete pipeline from sequencing reads to RBP binding sites. RBP
2019 Improved library preparation with the new iCLIP2 protocol. RBP
2019 MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network. miRNAs, PRC2, RISC
2019 RNA-Binding Proteins in the Control of LPS-Induced Macrophage Response. hnRNP K, HuR, KH, LPS, MAPK, NF-kappaB, RBPs, RNA-Seq, RRM, TLR4, TTP
2018 Characterization of cis-acting elements that control oscillating alternative splicing. AS
10  2018 HNRNPA1 promotes recognition of splice site decoys by U2AF2 in vivo. hnRNP A1, RBPs, U2AF2
11  2018 The key protein of endosomal mRNP transport Rrm4 binds translational landmark sites of cargo mRNAs. mRNP, RBPs
12  2017 ALYREF mainly binds to the 5' and the 3' regions of the mRNA in vivo. TREX
13  2017 Cellular differentiation state modulates the mRNA export activity of SR proteins. ---
14  2017 Characterization of the B Cell Transcriptome Bound by RNA-Binding Proteins with iCLIP. mRNA, RBPs
15  2016 Global identification of hnRNP A1 binding sites for SSO-based splicing modulation. SREs, SSOs
16  2016 Pairing beyond the Seed Supports MicroRNA Targeting Specificity. ChimP
17  2016 SR proteins are NXF1 adaptors that link alternative RNA processing to mRNA export. NXF1
18  2015 Drosophila Imp iCLIP identifies an RNA assemblage coordinating F-actin formation. RNPs
19  2015 Global analysis of CPSF2-mediated alternative splicing: Integration of global iCLIP and transcriptome profiling data. CPSF, SYMPK
20  2015 Improved binding site assignment by high-resolution mapping of RNA-protein interactions using iCLIP. RBPs
21  2015 Profiling the Binding Sites of RNA-Binding Proteins with Nucleotide Resolution Using iCLIP. RBPs
22  2015 Promiscuous RNA binding ensures effective encapsidation of APOBEC3 proteins by HIV-1. A3F, A3G, APOBEC3, Gag DeltaNC, gRNA, HIV-1, NC
23  2015 RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma. Msi1
24  2013 iCLIP: protein-RNA interactions at nucleotide resolution. RBPs
25  2013 NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs. ncRNAs, tRNAs
26  2010 iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. hnRNP