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[Related PubMed/MEDLINE]
Total Number of Papers: 296
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| Abbreviation |
: t-SNE |
| Long Form |
: t-distributed stochastic neighbor embedding |
|
| No. |
Year |
Title |
Co-occurring Abbreviation |
| 1 |
2023 |
A cross entropy test allows quantitative statistical comparison of t-SNE and UMAP representations. |
UMAP |
| 2 |
2023 |
BinderSpace: A package for sequence space analyses for datasets of affinity-selected oligonucleotides and peptide-based molecules. |
PCA |
| 3 |
2023 |
Characterization of diverse populations of sinoatrial node cells and their proliferation potential at single nucleus resolution. |
GO, KEGG, PCA, SAN, UMAP |
| 4 |
2023 |
Characterization of neuroendocrine regulation- and metabolism-associated molecular features and prognostic indicators with aid to clinical chemotherapy and immunotherapy of patients with pancreatic cancer. |
GSEA, PCA, ssGSEA, TIDE, TIMER |
| 5 |
2023 |
Chemical Decrosslinking-Based Peptide Characterization of Formaldehyde-Fixed Rat Pancreas Using Fluorescence-Guided Single-Cell Mass Spectrometry. |
FF, MS |
| 6 |
2023 |
Construction and validation of a prognostic model for gastrointestinal stromal tumors based on copy number alterations and clinicopathological characteristics. |
CNAB, FGA, GISTs, HR, MSI, TMB |
| 7 |
2023 |
Coupled retrieval of heavy metal nickel concentration in agricultural soil from spaceborne hyperspectral imagery. |
DR, DWT, Ni, XGBoost |
| 8 |
2023 |
Data-Driven Phenotyping of Alzheimer's Disease under Epigenetic Conditions Using Partial Volume Correction of PET Studies and Manifold Learning. |
AD, MRI, PET, PVC, RSF |
| 9 |
2023 |
Depiction of immune heterogeneity of peripheral blood from patients with type II diabetic nephropathy based on mass cytometry. |
DN, PBMC |
| 10 |
2023 |
Determination of benzo(a)pyrene in peanut oil based on Raman spectroscopy and machine learning methods. |
BaP, BPNN, PCA, PLSR, RF, SVM |
| 11 |
2023 |
Effect of distance measures on confidences of t-SNE embeddings and its implications on clustering for scRNA-seq data. |
ACC, ARI, DBSCAN, NMI |
| 12 |
2023 |
Explaining and Visualizing Embeddings of One-Dimensional Convolutional Models in Human Activity Recognition Tasks. |
HAR, XAI |
| 13 |
2023 |
FAPD: An Astringency Threshold and Astringency Type Prediction Database for Flavonoid Compounds Based on Machine Learning. |
FAPD, GBDT, GNB, GPR, kNN, MFSs, ML, RF, SGD, SHAP, SVM, SVR |
| 14 |
2023 |
Genomics data analysis via spectral shape and topology. |
--- |
| 15 |
2023 |
Get a New Perspective on EEG: Convolutional Neural Network Encoders for Parametric t-SNE. |
CNN |
| 16 |
2023 |
Identification and experimental verification of an anoikis and immune related signature in prognosis for lung adenocarcinoma. |
AIRGs, GEO, GO, KEGG, KM, LASSO, LUAD, PCA, qRT-PCR, ROC |
| 17 |
2023 |
Identification of a novel defined inflammation-related long noncoding RNA signature contributes to predicting prognosis and distinction between the cold and hot tumors in bladder cancer. |
BLCA, HRS, KEGG, LASSO, lncRNAs, LncRNAs, LRS, multi-Cox, PCA, ROC, uni-Cox |
| 18 |
2023 |
Insight into the Electronic Properties of Semiconductor Heterostructure Based on Machine Learning and First-Principles. |
DFT, SVM, XGBoost |
| 19 |
2023 |
Non-Perturbative Identification and Subtyping of Amyloidosis in Human Kidney Tissue with Raman Spectroscopy and Machine Learning. |
DBSCAN |
| 20 |
2023 |
Radiomics approach with deep learning for predicting T4 obstructive colorectal cancer using CT image. |
AUC, CT, dROI, NT4, OCC |
| 21 |
2023 |
Rapid identification and drug resistance screening of respiratory pathogens based on single-cell Raman spectroscopy. |
SCRS-D2O, XGBoost |
| 22 |
2023 |
Rheological Properties of Small-Molecular Liquids at High Shear Strain Rates. |
PCA |
| 23 |
2023 |
Single-cell transcriptomics reveals immune infiltrate in sepsis. |
DCs, DEGs, GSEA, NK |
| 24 |
2023 |
Structural Analysis and Classification of Low-Molecular-Weight Hyaluronic Acid by Near-Infrared Spectroscopy: A Comparison between Traditional Machine Learning and Deep Learning. |
FTIR, GA, KPCA, LMWHA, LSTM, NIR, NMR, PCA, PLS-DA, RF, SVC |
| 25 |
2023 |
Tenofovir alters the immune microenvironment of pregnant women with hepatitis B virus infection: Evidence from single-cell RNA sequencing. |
HBV, NK, PBMCs, scRNA-seq |
| 26 |
2023 |
Tissue contamination challenges the credibility of machine learning models in real world digital pathology. |
DA, GA, ML |
| 27 |
2023 |
Unsupervised Drones Swarm Characterization Using RF Signals Analysis and Machine Learning Methods. |
ICA, PCA, RF, UAVs, UMAP |
| 28 |
2023 |
Unsupervised machine learning framework for discriminating major variants of concern during COVID-19. |
PCA, UMAP |
| 29 |
2023 |
Using feature selection and Bayesian network identify cancer subtypes based on proteomic data. |
ROC, RPPA |
| 30 |
2023 |
Vascular features around the optic disc in familial exudative vitreoretinopathy: findings and their relationship to disease severity. |
FEVR, VD, VT, VW |
| 31 |
2022 |
A change of PD-1/PD-L1 expression on peripheral T cell subsets correlates with the different stages of Alzheimer's Disease. |
AD |
| 32 |
2022 |
A novel signature to guide osteosarcoma prognosis and immune microenvironment: Cuproptosis-related lncRNA. |
CRGs, CRLncs, GEO, LASSO, OS, PCA, ROC, ssGSEA |
| 33 |
2022 |
An interpretable deep learning model for classifying adaptor protein complexes from sequence information. |
APs, SHAP, UMAP |
| 34 |
2022 |
Characterizing the molecular heterogeneity of clear cell renal cell carcinoma subgroups classified by miRNA expression profile. |
ccRCC, DEGs, PCA |
| 35 |
2022 |
Classification of Breast Cancer Nottingham Prognostic Index Using High-Dimensional Embedding and Residual Neural Network. |
AUC, CNA, GSN, NPI, ResNet |
| 36 |
2022 |
Comparison of dimension reduction techniques applied to the analysis of airborne radionuclide activity concentration. |
PCA, UMAP |
| 37 |
2022 |
Comprehensive analysis of lower mitochondrial complex I expression is associated with cell metastasis of clear cell renal cell carcinoma. |
ccRCC, CI, DEGs, ETC, GSEA, GSVA, mRCC, OS, PCA, PPI, PRCC, scRNA-seq |
| 38 |
2022 |
Comprehensive immune cell analysis of human menstrual-blood-derived stem cells therapy to concanavalin A hepatitis. |
AST, Con A, IFN-gamma, IL, MenSCs, TNF-alpha |
| 39 |
2022 |
Construction and validation of a histone acetylation-related lncRNA prognosis signature for ovarian cancer. |
GSEA, GTEx, HARlncRNAs, HRD, ICGC, LASSO, lncRNA, OC, PCA, ROC |
| 40 |
2022 |
DARC: Deep adaptive regularized clustering for histopathological image classification. |
DARC |
| 41 |
2022 |
Data augmentation strategies for EEG-based motor imagery decoding. |
BCI, EEG, FID, MI |
| 42 |
2022 |
Deep convolutional neural networks for construction and demolition waste classification: VGGNet structures, cyclical learning rate, and knowledge transfer. |
--- |
| 43 |
2022 |
Deep learning and radiomics framework for PSMA-RADS classification of prostate cancer on PSMA PET. |
AUROC, PCa, PET, PSMA, PSMA-RADS |
| 44 |
2022 |
Deep learning-based classification of infectious keratitis on slit-lamp images. |
AK, BK, FK, Grad-CAM, HSK, IK, ROC |
| 45 |
2022 |
Detection of lipid efflux from foam cell models using a label-free infrared method. |
FTIR, LDL, PCA |
| 46 |
2022 |
Determining Sex-Based Differences in Inflammatory Response in an Experimental Traumatic Brain Injury Model. |
BBB, CCI |
| 47 |
2022 |
Development of an effective clustering algorithm for older fallers. |
MELoR, PCA |
| 48 |
2022 |
DGCyTOF: Deep learning with graphic cluster visualization to predict cell types of single cell mass cytometry data. |
CyTOF, FA, ICA, PCA, UMAP |
| 49 |
2022 |
Discovery of new drug indications for COVID-19: A drug repurposing approach. |
HAC, OPTICS |
| 50 |
2022 |
Ectasia Risk Model: A Novel Method Without Cut-off Point Based on Artificial Intelligence Improves Detection of Higher-Risk Eyes. |
AI |
| 51 |
2022 |
Effective Multimodal Encoding for Image Paragraph Captioning. |
MEG |
| 52 |
2022 |
Environmental risks and sphingolipid signatures in adult asthma and its phenotypic clusters: a multicentre study. |
NHIRD, PAHs, PM2.5, T2DM |
| 53 |
2022 |
Evaluation of feature projection techniques in object grasp classification using electromyogram signals from different limb positions. |
EMG, LDA, PCA, SRELM |
| 54 |
2022 |
Explainable artificial intelligence approach in combating real-time surveillance of COVID19 pandemic from CT scan and X-ray images using ensemble model. |
AI, CNN, DT, GNB, Grad-CAM, KNN, LR, RF, SVM |
| 55 |
2022 |
Explainable Artificial Intelligence-Based IoT Device Malware Detection Mechanism Using Image Visualization and Fine-Tuned CNN-Based Transfer Learning Model. |
DEX, DL, Grad-CAM |
| 56 |
2022 |
Exploring biomarkers and transcriptional factors in type 2 diabetes by comprehensive bioinformatics analysis on RNA-Seq and scRNA-Seq data. |
DEGs, GEO, GO, KEGG, LASSO, PCA, ROC, scRNA, T2D, TFs |
| 57 |
2022 |
Fingerprints of Element Concentrations in Infective Endocarditis Obtained by Mass Spectrometric Imaging and t-Distributed Stochastic Neighbor Embedding. |
IE, LA-ICP-MS |
| 58 |
2022 |
Fuzzy Information Discrimination Measures and Their Application to Low Dimensional Embedding Construction in the UMAP Algorithm. |
PaCMAP, UMAP |
| 59 |
2022 |
High-Dimensional Analysis Reveals Distinct Endotypes in Patients With Idiopathic Inflammatory Myopathies. |
CITRUS, CyTOF, IIM, MEM, PBMCs |
| 60 |
2022 |
Identification and Characterization of Short-Term Motor Patterns in Rest Tremor of Individuals with Parkinson's Disease. |
HC, PD, STMPs |
| 61 |
2022 |
Identification and exploration of the pyroptosis-related molecular subtypes of breast cancer by bioinformatics and machine learning. |
BRCA, NMF |
| 62 |
2022 |
Identification and Validation of a Hypoxia-Immune-Based Prognostic mRNA Signature for Oral Squamous Cell Carcinoma. |
LASSO, OS, OSCC, ssGSEA |
| 63 |
2022 |
Identification and Validation of Immune Markers in Coronary Heart Disease. |
CHD, PBMCs, ssGSEA, WGCNA |
| 64 |
2022 |
Identification of coumarin-based food additives using terahertz spectroscopy combined with manifold learning and improved support vector machine. |
DE, GWO, PCA, SVM, THz, THz-TDS |
| 65 |
2022 |
Identification of Prognostic Genes in Hepatocellular Carcinoma. |
GEO, HCC, NMF, TSCs |
| 66 |
2022 |
Integrating nonlinear analysis and machine learning for human induced pluripotent stem cell-based drug cardiotoxicity testing. |
hiPSC, hiPSC-CMs |
| 67 |
2022 |
Looseness Identification of Track Fasteners Based on Ultra-Weak FBG Sensing Technology and Convolutional Autoencoder Network. |
CAE |
| 68 |
2022 |
Manifold Alignment Aware Ants: A Markovian Process for Manifold Extraction. |
MC |
| 69 |
2022 |
Novel insight on predicting prognosis of gastric cancer based on inflammation. |
GC, GEO, GSEA, IRG, LASSO, PCA, ROC, TME |
| 70 |
2022 |
Odorant receptors in cancer. |
ORs |
| 71 |
2022 |
Panoramic Manifold Projection (Panoramap) for Single-Cell Data Dimensionality Reduction and Visualization. |
NLDR, UMAP |
| 72 |
2022 |
Pediatric spinal pilocytic astrocytomas form a distinct epigenetic subclass from pilocytic astrocytomas of other locations and diffuse leptomeningeal glioneuronal tumours. |
DLGNT, LGG, MAPK, PA, WHO |
| 73 |
2022 |
Polygenic risk modeling of tumor stage and survival in bladder cancer. |
GED, UMAP |
| 74 |
2022 |
Potential Blood DNA Methylation Biomarker Genes for Diagnosis of Liver Fibrosis in Patients With Biopsy-Proven Non-alcoholic Fatty Liver Disease. |
BDM, NAFLD, TSS |
| 75 |
2022 |
Preseason multiple biomechanics testing and dimension reduction for injury risk surveillance in elite female soccer athletes: short-communication. |
KPCA, PCA, UMAP |
| 76 |
2022 |
Prioritizing risk genes as novel stratification biomarkers for acute monocytic leukemia by integrative analysis. |
AML, FAB |
| 77 |
2022 |
Protein succinylation associated with the progress of hepatocellular carcinoma. |
HCC, NMF |
| 78 |
2022 |
PyRAT: An Open-Source Python Library for Animal Behavior Analysis. |
PyRAT |
| 79 |
2022 |
Shape-aware stochastic neighbor embedding for robust data visualisations. |
HD, PHATE, UMAP |
| 80 |
2022 |
Similar color analysis based on deep learning (SCAD) for multiplex digital PCR via a single fluorescent channel. |
dPCR, SCAD, ViT |
| 81 |
2022 |
Single-cell RNA Seq reveals cellular landscape-specific characteristics and potential etiologies for adolescent idiopathic scoliosis. |
AIS, CPC, GO, MSC, scRNA-seq |
| 82 |
2022 |
Single-Cell Sequencing Revealed Pivotal Genes Related to Prognosis of Myocardial Infarction Patients. |
MI, WGCNA |
| 83 |
2022 |
Spatiotemporal and kinematic characteristics augmentation using Dual-GAN for ankle instability detection. |
CAI, Dual-GAN, FCN, LSTM |
| 84 |
2022 |
Spectral clustering of single cells using Siamese nerual network combined with improved affinity matrix. |
CNN, scRNA-seq |
| 85 |
2022 |
Stain-free Gram staining classification of pathogens via single-cell Raman spectroscopy combined with machine learning. |
GBM, GN, GP, GS, HCA, k-NN, LDA, SVM |
| 86 |
2022 |
The involvement of high succinylation modification in the development of prostate cancer. |
NMF, PCa |
| 87 |
2022 |
The Structure of Social Networks and Its Link to Higher Education Students' Socio-Emotional Loneliness During COVID-19. |
--- |
| 88 |
2022 |
Understanding Attraction, Behavior, and Identity in the Asexual Community. |
--- |
| 89 |
2022 |
Unsupervised classification of voltammetric data beyond principal component analysis. |
PCA, UMAP |
| 90 |
2022 |
User Profiling to Enhance Clinical Assessment and Human-Robot Interaction: A Feasibility Study. |
NMDS, SARs |
| 91 |
2022 |
Using Global t-SNE to Preserve Intercluster Data Structure. |
g-SNE |
| 92 |
2022 |
Very High Resolution Species Distribution Modeling Based on Remote Sensing Imagery: How to Capture Fine-Grained and Large-Scale Vegetation Ecology With Convolutional Neural Networks? |
SDMs, VHR |
| 93 |
2022 |
Visual Clustering of Transcriptomic Data from Primary and Metastatic Tumors-Dependencies and Novel Pitfalls. |
UMAP |
| 94 |
2021 |
A Comparison for Dimensionality Reduction Methods of Single-Cell RNA-seq Data. |
scRNA-seq, UMAP |
| 95 |
2021 |
A Novel Recurrent Neural Network to Classify EEG Signals for Customers' Decision-Making Behavior Prediction in Brand Extension Scenario. |
BP, EEG, ICA, LSTM, PCA, SVM |
| 96 |
2021 |
A t-SNE Based Classification Approach to Compositional Microbiome Data. |
DT, LR, SVM |
| 97 |
2021 |
An Efficient Dual-Hierarchy t-SNE Minimization. |
--- |
| 98 |
2021 |
An integrated deep learning model for motor intention recognition of multi-class EEG Signals in upper limb amputees. |
EEG, LSTM, SAE |
| 99 |
2021 |
Application of Uniform Manifold Approximation and Projection (UMAP) in spectral imaging of artworks. |
UMAP |
| 100 |
2021 |
Assessing single-cell transcriptomic variability through density-preserving data visualization. |
UMAP |
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