| 1 |
RNA sequencing
(1227 times)
|
Molecular Biology
(145 times)
|
DEGs (145 times)
GO (87 times)
qRT-PCR (56 times)
|
2009 Statistical inferences for isoform expression in RNA-Seq.
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| 2 |
ribonucleic acid sequencing
(31 times)
|
Natural Science Disciplines
(4 times)
|
DEGs (7 times)
GO (2 times)
KEGG (2 times)
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2012 A normalization strategy for comparing tag count data.
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| 3 |
RNA sequencing technology
(17 times)
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Medicine
(5 times)
|
DEGs (4 times)
GO (2 times)
KEGG (2 times)
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2012 Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.
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| 4 |
RNA sequence
(10 times)
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Medicine
(3 times)
|
AFM (1 time)
ARGs (1 time)
AUC (1 time)
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2014 Successful pod infections by Moniliophthora roreri result in differential Theobroma cacao gene expression depending on the clone's level of tolerance.
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| 5 |
RNA transcriptome sequencing
(8 times)
|
Allergy and Immunology
(1 time)
|
AVMs (1 time)
BARTs (1 time)
CGH (1 time)
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2012 Application of the Gini correlation coefficient to infer regulatory relationships in transcriptome analysis.
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| 6 |
RNA-sequencing analysis
(4 times)
|
Tropical Medicine
(1 time)
|
CBM (1 time)
GST (1 time)
HPLC (1 time)
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2015 [Inhibition of replication and transcription of WSN influenza A virus by IFIT family genes].
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| 7 |
RNA sequencing data
(3 times)
|
Science
(1 time)
|
CGA (1 time)
DA (1 time)
GT43 (1 time)
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2015 Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae.
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| 8 |
Recent advances in RNA sequencing
(2 times)
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Medicine
(1 time)
|
AS (1 time)
DAS (1 time)
DE (1 time)
|
2013 Evaluating the impact of sequencing depth on transcriptome profiling in human adipose.
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| 9 |
RESULTS: Transcriptome sequencing
(2 times)
|
Tropical Medicine
(2 times)
|
Der p 1-like (1 time)
Der p 7-like (1 time)
Eur m 1-like (1 time)
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2018 Transcriptomic analysis of male and female Schistosoma mekongi adult worms.
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| 10 |
RNA shotgun sequencing
(2 times)
|
Virology
(1 time)
|
HCV (1 time)
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2018 Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma.
|
| 11 |
RNA-based next-generation sequencing
(2 times)
|
Zoology
(1 time)
|
NHPRTR (1 time)
NHPs (1 time)
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2012 The non-human primate reference transcriptome resource (NHPRTR) for comparative functional genomics.
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| 12 |
lncRNA-RNA sequencing
(1 time)
|
Zoology
(1 time)
|
BPA (1 time)
BPS (1 time)
EDC (1 time)
|
2020 Identification of novel long non-coding RNAs involved in bisphenol A induced immunotoxicity in fish primary macrophages.
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| 13 |
metabolism-related nsSNVs, next-generation transcriptome sequencing
(1 time)
|
Science
(1 time)
|
nsSNVs (1 time)
PTCR (1 time)
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2012 RNA-Seq approach for genetic improvement of meat quality in pig and evolutionary insight into the substrate specificity of animal carbonyl reductases.
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| 14 |
random hexamers and the cDNA is subsequently sequenced
(1 time)
|
Molecular Biology
(1 time)
|
smsDGE (1 time)
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2011 RNA sequencing and quantitation using the Helicos Genetic Analysis System.
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| 15 |
RcsB-regulated genes involved in swarmer cell differentiation, transcriptome sequencing
(1 time)
|
Bacteriology
(1 time)
|
5'-RACE (1 time)
qRT (1 time)
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2015 Regulation of the Min Cell Division Inhibition Complex by the Rcs Phosphorelay in Proteus mirabilis.
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| 16 |
reads present in transcriptome sequencing
(1 time)
|
Virology
(1 time)
|
HPV18 (1 time)
WXS (1 time)
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2015 HeLa nucleic acid contamination in the cancer genome atlas leads to the misidentification of human papillomavirus 18.
|
| 17 |
reads using whole transcript sequencing
(1 time)
|
Zoology
(1 time)
|
S. Typhimurium (1 time)
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2010 Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection.
|
| 18 |
Recent advances in next-generation sequencing technology allow high-throughput cDNA sequencing
(1 time)
|
Science
(1 time)
|
DEGs (1 time)
|
2014 A comparative study of techniques for differential expression analysis on RNA-Seq data.
|
| 19 |
recent massive parallel sequencing
(1 time)
|
Genetic Phenomena
(1 time)
|
HSD11B1 (1 time)
|
2017 Analysis of Purified Pancreatic Islet Beta and Alpha Cell Transcriptomes Reveals 11β-Hydroxysteroid Dehydrogenase (Hsd11b1) as a Novel Disallowed Gene.
|
| 20 |
recent years, the massively parallel cDNA sequencing
(1 time)
|
Medical Informatics
(1 time)
|
---
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2017 DART: a fast and accurate RNA-seq mapper with a partitioning strategy.
|
| 21 |
recently developed to perform transcriptome sequencing
(1 time)
|
Science
(1 time)
|
---
|
2014 Microfluidic single-cell whole-transcriptome sequencing.
|
| 22 |
Recently, mRNA sequencing analysis
(1 time)
|
Virology
(1 time)
|
HuNoV (1 time)
NK (1 time)
NoV GII (1 time)
|
2021 Analysis of the Immune Responses in the Ileum of Gnotobiotic Pigs Infected with the Recombinant GII.p12_GII.3 Human Norovirus by mRNA Sequencing.
|
| 23 |
Recently, next-generation sequencing techniques at the transcriptome level
(1 time)
|
Science
(1 time)
|
CML (1 time)
PE (1 time)
SE (1 time)
|
2012 FusionFinder: a software tool to identify expressed gene fusion candidates from RNA-Seq data.
|
| 24 |
recognition test followed by PFC dissections for next-generation sequencing
(1 time)
|
Neurology
(1 time)
|
CBD (1 time)
KET (1 time)
PFC (1 time)
|
2019 Cannabidiol Improves Cognitive Impairment and Reverses Cortical Transcriptional Changes Induced by Ketamine, in Schizophrenia-Like Model in Rats.
|
| 25 |
reduced proliferative capacity, which we assessed by transcriptome sequencing
(1 time)
|
Molecular Biology
(1 time)
|
---
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2015 PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function.
|
| 26 |
regulated genes detected by the using high-throughput cDNA sequencing
(1 time)
|
Medicine
(1 time)
|
HCC (1 time)
|
2020 [Establishment and gene expression analysis of drug-resistant cell lines in hepatocellular carcinoma induced by sorafenib].
|
| 27 |
regulation, and whole-transcriptome sequencing
(1 time)
|
Genetics
(1 time)
|
lncRNAs (1 time)
|
2017 Long noncoding RNA repertoire in chicken liver and adipose tissue.
|
| 28 |
regulators by demonstrating differential allelic expression with sequencing of transcriptomes
(1 time)
|
Biology
(1 time)
|
---
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2010 Polymorphic cis- and trans-regulation of human gene expression.
|
| 29 |
relapse was sequenced using a whole-transcriptome shotgun sequencing
(1 time)
|
Hematologic Neoplasms
(1 time)
|
ALL (1 time)
AS (1 time)
|
2012 Application of the whole-transcriptome shotgun sequencing approach to the study of Philadelphia-positive acute lymphoblastic leukemia.
|
| 30 |
relative abundance data obtained by Nanostring or transcriptome sequencing
(1 time)
|
Communicable Diseases
(1 time)
|
CF (1 time)
|
2016 Use of a Multiplex Transcript Method for Analysis of Pseudomonas aeruginosa Gene Expression Profiles in the Cystic Fibrosis Lung.
|
| 31 |
relative accuracy of microarrays and transcriptome sequencing
(1 time)
|
Genetics
(1 time)
|
---
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2009 Estimating accuracy of RNA-Seq and microarrays with proteomics.
|
| 32 |
remission of EAE disease, we used Illumina deep mRNA sequencing
(1 time)
|
Neurology
(1 time)
|
APCs (1 time)
CNS (1 time)
EAE (1 time)
|
2016 Increase of Alternatively Activated Antigen Presenting Cells in Active Experimental Autoimmune Encephalomyelitis.
|
| 33 |
report the high-coverage sequencing
(1 time)
|
Tropical Medicine
(1 time)
|
---
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2015 Functional analysis of Girardia tigrina transcriptome seeds pipeline for anthelmintic target discovery.
|
| 34 |
represented in the sequence sample
(1 time)
|
Biomedical Research
(1 time)
|
---
|
2008 Mapping and quantifying mammalian transcriptomes by RNA-Seq.
|
| 35 |
resequencing, transcriptional profiling
(1 time)
|
Aging
(1 time)
|
NGS (1 time)
|
2009 Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions.
|
| 36 |
resistance as revealed by transcriptome sequencing
(1 time)
|
Microbiological Phenomena
(1 time)
|
RNAP (1 time)
|
2014 Linking system-wide impacts of RNA polymerase mutations to the fitness cost of rifampin resistance in Pseudomonas aeruginosa.
|
| 37 |
resistance, transcriptome sequencing
(1 time)
|
Drug Therapy
(1 time)
|
---
|
2018 Broad-Spectrum Adaptive Antibiotic Resistance Associated with Pseudomonas aeruginosa Mucin-Dependent Surfing Motility.
|
| 38 |
resolution than microarrays, next-generation sequencing of mRNA
(1 time)
|
Molecular Biology
(1 time)
|
---
|
2013 Calculating sample size estimates for RNA sequencing data.
|
| 39 |
resolution using mRNA sequencing
(1 time)
|
Molecular Biology
(1 time)
|
ChIP-Seq (1 time)
NGS (1 time)
|
2017 Systems Biology Analyses in Chicken: Workflow for Transcriptome and ChIP-Seq Analyses Using the Chicken Skin Paradigm.
|
| 40 |
response to chronic cigarette smoking using massive parallel mRNA sequencing
(1 time)
|
Genetics
(1 time)
|
SAE (1 time)
|
2012 RNA-Seq quantification of the human small airway epithelium transcriptome.
|
| 41 |
resulting transcriptome was analyzed by deep sequencing
(1 time)
|
Chemistry
(1 time)
|
EJC (1 time)
|
2016 The Exon Junction Complex Controls the Efficient and Faithful Splicing of a Subset of Transcripts Involved in Mitotic Cell-Cycle Progression.
|
| 42 |
results detailing targeted mRNA sequencing
(1 time)
|
Environmental Exposure
(1 time)
|
AAF (1 time)
CRE (1 time)
FFPE (1 time)
|
2020 Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens.
|
| 43 |
RESULTS: We used a massively parallel mRNA sequencing platform
(1 time)
|
Genetics
(1 time)
|
AS (1 time)
ID (1 time)
IRESes (1 time)
|
2013 Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing.
|
| 44 |
rice and Burkholderia glumae, we used transcriptomics via next-generation sequencing
(1 time)
|
Genetics
(1 time)
|
---
|
2014 Transcriptomic dissection of the rice-Burkholderia glumae interaction.
|
| 45 |
river water as control, and high-throughput mRNA sequencing
(1 time)
|
Genetics
(1 time)
|
ADW (1 time)
|
2016 De novo assembly and analysis of changes in the protein-coding transcriptome of the freshwater shrimp Paratya australiensis (Decapoda: Atyidae) in response to acid sulfate drainage water.
|
| 46 |
RNA depletion library preparations, followed byRNA sequencing
(1 time)
|
Neoplasms
(1 time)
|
DE (1 time)
GS (1 time)
lncRNAs (1 time)
|
2018 Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers.
|
| 47 |
RNA high-throughput sequencing
(1 time)
|
Toxicology
(1 time)
|
miRNAs (1 time)
RT (1 time)
|
2021 Analysis of the microRNA and mRNA expression profile of ricin toxin-treated RAW264.7 cells reveals that miR-155-3p suppresses cell inflammation by targeting GAB2.
|
| 48 |
RNA of laser-dissected ASM was sequenced
(1 time)
|
Pulmonary Medicine
(1 time)
|
ASM (1 time)
|
2013 Glucocorticoid-induced changes in gene expression of airway smooth muscle in patients with asthma.
|
| 49 |
RNA was sequenced
(1 time)
|
Genetic Phenomena
(1 time)
|
---
|
2017 Triportheus albus Cope, 1872 in the Blackwater, Clearwater, and Whitewater of the Amazon: A Case of Phenotypic Plasticity?
|
| 50 |
RNA was used for high-throughput, sequencing-based transcriptomic analysis
(1 time)
|
Molecular Biology
(1 time)
|
AhR (1 time)
BPD (1 time)
|
2014 The genome-wide transcriptional response to neonatal hyperoxia identifies Ahr as a key regulator.
|
| 51 |
RNA, and RNA-sequencing
(1 time)
|
Science
(1 time)
|
LAM (1 time)
|
2012 A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing.
|
| 52 |
RNA-sequencing-based
(1 time)
|
Chemistry
(1 time)
|
aCTSC (1 time)
CTSCs (1 time)
GO (1 time)
|
2021 Transcriptional Profiling of Cardiac Cells Links Age-Dependent Changes in Acetyl-CoA Signaling to Chromatin Modifications.
|
| 53 |
RpoE-dependent genes using transcriptome sequencing
(1 time)
|
Bacteriology
(1 time)
|
ECF (1 time)
TCSs (1 time)
|
2014 Haemophilus ducreyi RpoE and CpxRA appear to play distinct yet complementary roles in regulation of envelope-related functions.
|
| 54 |
short-read massively-parallel sequencing
(1 time)
|
Neoplasms
(1 time)
|
HPV (1 time)
OT (1 time)
|
2013 Oral cavity tumors in younger patients show a poor prognosis and do not contain viral RNA.
|
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