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■ Search Result - Abbreviation : RNA-Seq

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Abbreviation: RNA-Seq
Appearance Frequency: 1614 time(s)
Long forms: 53

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Long Form No. Long Form Research Area Co-occurring Abbreviation PubMed/MEDLINE Info. (Year, Title)
RNA sequencing
(1523 times)
Molecular Biology
(166 times)
DEGs (205 times)
GO (107 times)
KEGG (71 times)
2009 Statistical inferences for isoform expression in RNA-Seq.
RNA sequencing technology
(20 times)
Medicine
(5 times)
DEGs (6 times)
GO (2 times)
KEGG (2 times)
2012 Hybridization-based reconstruction of small non-coding RNA transcripts from deep sequencing data.
RNA-sequence
(11 times)
Medicine
(3 times)
AAV9 (1 time)
AF (1 time)
AFM (1 time)
2014 Successful pod infections by Moniliophthora roreri result in differential Theobroma cacao gene expression depending on the clone's level of tolerance.
RNA sequencing data
(5 times)
Natural Science Disciplines
(1 time)
CGA (1 time)
DA (1 time)
DEGs (1 time)
2015 Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae.
RNA-sequencing analysis
(4 times)
Biotechnology
(1 time)
CBM (1 time)
GST (1 time)
HPLC (1 time)
2015 [Inhibition of replication and transcription of WSN influenza A virus by IFIT family genes].
Recent advances in RNA sequencing
(2 times)
Medicine
(1 time)
AS (1 time)
DAS (1 time)
DE (1 time)
2013 Evaluating the impact of sequencing depth on transcriptome profiling in human adipose.
RESULTS: Transcriptome sequencing
(2 times)
Parasitology
(2 times)
Der p 1-like (1 time)
Der p 7-like (1 time)
Eur m 1-like (1 time)
2018 Transcriptomic analysis of male and female Schistosoma mekongi adult worms.
RNA shotgun sequencing
(2 times)
Virology
(1 time)
HCV (1 time)
2018 Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma.
lncRNA-RNA sequencing
(1 time)
Allergy and Immunology
(1 time)
BPA (1 time)
BPS (1 time)
EDC (1 time)
2020 Identification of novel long non-coding RNAs involved in bisphenol A induced immunotoxicity in fish primary macrophages.
10  Long-read nanopore transcriptome sequencing
(1 time)
--- 2021 Csp1, a Cold Shock Protein Homolog in Xylella fastidiosa Influences Cell Attachment, Pili Formation, and Gene Expression.
11  metabolism-related nsSNVs, next-generation transcriptome sequencing
(1 time)
Medicine
(1 time)
nsSNVs (1 time)
PTCR (1 time)
2012 RNA-Seq approach for genetic improvement of meat quality in pig and evolutionary insight into the substrate specificity of animal carbonyl reductases.
12  random hexamers and the cDNA is subsequently sequenced
(1 time)
Molecular Biology
(1 time)
smsDGE (1 time)
2011 RNA sequencing and quantitation using the Helicos Genetic Analysis System.
13  RcsB-regulated genes involved in swarmer cell differentiation, transcriptome sequencing
(1 time)
Bacteriology
(1 time)
5'-RACE (1 time)
qRT (1 time)
2015 Regulation of the Min Cell Division Inhibition Complex by the Rcs Phosphorelay in Proteus mirabilis.
14  reads present in transcriptome sequencing
(1 time)
Virology
(1 time)
HPV18 (1 time)
WXS (1 time)
2015 HeLa nucleic acid contamination in the cancer genome atlas leads to the misidentification of human papillomavirus 18.
15  reads using whole transcript sequencing
(1 time)
Allergy and Immunology
(1 time)
S. Typhimurium (1 time)
2010 Deep sequencing of the innate immune transcriptomic response of zebrafish embryos to Salmonella infection.
16  Recent advances in next-generation sequencing technology allow high-throughput cDNA sequencing
(1 time)
Medicine
(1 time)
DEGs (1 time)
2014 A comparative study of techniques for differential expression analysis on RNA-Seq data.
17  recent massive parallel sequencing
(1 time)
Genetic Phenomena
(1 time)
HSD11B1 (1 time)
2017 Analysis of Purified Pancreatic Islet Beta and Alpha Cell Transcriptomes Reveals 11beta-Hydroxysteroid Dehydrogenase (Hsd11b1) as a Novel Disallowed Gene.
18  recent years, the massively parallel cDNA sequencing
(1 time)
Medical Informatics
(1 time)
--- 2017 DART: a fast and accurate RNA-seq mapper with a partitioning strategy.
19  recently developed to perform transcriptome sequencing
(1 time)
Science
(1 time)
--- 2014 Microfluidic single-cell whole-transcriptome sequencing.
20  Recently, mRNA sequencing analysis
(1 time)
Virology
(1 time)
HuNoV (1 time)
NK (1 time)
NoV GII (1 time)
2021 Analysis of the Immune Responses in the Ileum of Gnotobiotic Pigs Infected with the Recombinant GII.p12_GII.3 Human Norovirus by mRNA Sequencing.
21  Recently, next-generation sequencing techniques at the transcriptome level
(1 time)
Medicine
(1 time)
CML (1 time)
PE (1 time)
SE (1 time)
2012 FusionFinder: a software tool to identify expressed gene fusion candidates from RNA-Seq data.
22  recognition test followed by PFC dissections for next-generation sequencing
(1 time)
Molecular Biology
(1 time)
CBD (1 time)
KET (1 time)
PFC (1 time)
2019 Cannabidiol Improves Cognitive Impairment and Reverses Cortical Transcriptional Changes Induced by Ketamine, in Schizophrenia-Like Model in Rats.
23  reduced proliferative capacity, which we assessed by transcriptome sequencing
(1 time)
Cell Biology
(1 time)
--- 2015 PATZ1 Is a DNA Damage-Responsive Transcription Factor That Inhibits p53 Function.
24  regulated genes detected by the using high-throughput cDNA sequencing
(1 time)
Medicine
(1 time)
HCC (1 time)
2020 [Establishment and gene expression analysis of drug-resistant cell lines in hepatocellular carcinoma induced by sorafenib].
25  regulation, and whole-transcriptome sequencing
(1 time)
Biology
(1 time)
lncRNAs (1 time)
2017 Long noncoding RNA repertoire in chicken liver and adipose tissue.
26  regulators by demonstrating differential allelic expression with sequencing of transcriptomes
(1 time)
Biology
(1 time)
--- 2010 Polymorphic cis- and trans-regulation of human gene expression.
27  relapse was sequenced using a whole-transcriptome shotgun sequencing
(1 time)
Hematologic Neoplasms
(1 time)
ALL (1 time)
AS (1 time)
2012 Application of the whole-transcriptome shotgun sequencing approach to the study of Philadelphia-positive acute lymphoblastic leukemia.
28  relative abundance data obtained by Nanostring or transcriptome sequencing
(1 time)
Allergy and Immunology
(1 time)
CF (1 time)
2016 Use of a Multiplex Transcript Method for Analysis of Pseudomonas aeruginosa Gene Expression Profiles in the Cystic Fibrosis Lung.
29  relative accuracy of microarrays and transcriptome sequencing
(1 time)
Genetics
(1 time)
--- 2009 Estimating accuracy of RNA-Seq and microarrays with proteomics.
30  remission of EAE disease, we used Illumina deep mRNA sequencing
(1 time)
Neuropharmacology
(1 time)
APCs (1 time)
CNS (1 time)
EAE (1 time)
2016 Increase of Alternatively Activated Antigen Presenting Cells in Active Experimental Autoimmune Encephalomyelitis.
31  report the high-coverage sequencing
(1 time)
Parasitology
(1 time)
--- 2015 Functional analysis of Girardia tigrina transcriptome seeds pipeline for anthelmintic target discovery.
32  represented in the sequence sample
(1 time)
Clinical Laboratory Techniques
(1 time)
--- 2008 Mapping and quantifying mammalian transcriptomes by RNA-Seq.
33  resequencing, transcriptional profiling
(1 time)
Geriatrics
(1 time)
NGS (1 time)
2009 Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions.
34  resistance as revealed by transcriptome sequencing
(1 time)
Microbiology
(1 time)
RNAP (1 time)
2014 Linking system-wide impacts of RNA polymerase mutations to the fitness cost of rifampin resistance in Pseudomonas aeruginosa.
35  resistance, transcriptome sequencing
(1 time)
Anti-Bacterial Agents
(1 time)
--- 2018 Broad-Spectrum Adaptive Antibiotic Resistance Associated with Pseudomonas aeruginosa Mucin-Dependent Surfing Motility.
36  resolution than microarrays, next-generation sequencing of mRNA
(1 time)
Medical Informatics
(1 time)
--- 2013 Calculating sample size estimates for RNA sequencing data.
37  resolution using mRNA sequencing
(1 time)
Molecular Biology
(1 time)
ChIP-Seq (1 time)
NGS (1 time)
2017 Systems Biology Analyses in Chicken: Workflow for Transcriptome and ChIP-Seq Analyses Using the Chicken Skin Paradigm.
38  response to chronic cigarette smoking using massive parallel mRNA sequencing
(1 time)
Genetics
(1 time)
SAE (1 time)
2012 RNA-Seq quantification of the human small airway epithelium transcriptome.
39  resulting transcriptome was analyzed by deep sequencing
(1 time)
Chemistry
(1 time)
EJC (1 time)
2016 The Exon Junction Complex Controls the Efficient and Faithful Splicing of a Subset of Transcripts Involved in Mitotic Cell-Cycle Progression.
40  results detailing targeted mRNA sequencing
(1 time)
Environmental Exposure
(1 time)
AAF (1 time)
CRE (1 time)
FFPE (1 time)
2020 Using FFPE RNA-Seq with 12 marker genes to evaluate genotoxic and non-genotoxic rat hepatocarcinogens.
41  RESULTS: We used a massively parallel mRNA sequencing platform
(1 time)
Genetics
(1 time)
AS (1 time)
ID (1 time)
IRESes (1 time)
2013 Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing.
42  rice and Burkholderia glumae, we used transcriptomics via next-generation sequencing
(1 time)
Genetics
(1 time)
--- 2014 Transcriptomic dissection of the rice-Burkholderia glumae interaction.
43  river water as control, and high-throughput mRNA sequencing
(1 time)
Genetics
(1 time)
ADW (1 time)
2016 De novo assembly and analysis of changes in the protein-coding transcriptome of the freshwater shrimp Paratya australiensis (Decapoda: Atyidae) in response to acid sulfate drainage water.
44  RNA depletion library preparations, followed byRNA sequencing
(1 time)
Neoplasms
(1 time)
DE (1 time)
GS (1 time)
lncRNAs (1 time)
2018 Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers.
45  RNA high-throughput sequencing
(1 time)
Toxicology
(1 time)
miRNAs (1 time)
RT (1 time)
2021 Analysis of the microRNA and mRNA expression profile of ricin toxin-treated RAW264.7 cells reveals that miR-155-3p suppresses cell inflammation by targeting GAB2.
46  RNA of laser-dissected ASM was sequenced
(1 time)
Critical Care
(1 time)
ASM (1 time)
2013 Glucocorticoid-induced changes in gene expression of airway smooth muscle in patients with asthma.
47  RNA was extracted for dual transcriptome sequencing
(1 time)
Microbiology
(1 time)
--- 2021 Transcriptomic Responses to Coaggregation between Streptococcus gordonii and Streptococcus oralis.
48  RNA was sequenced
(1 time)
Genetic Phenomena
(1 time)
--- 2017 Triportheus albus Cope, 1872 in the Blackwater, Clearwater, and Whitewater of the Amazon: A Case of Phenotypic Plasticity?
49  RNA was used for high-throughput, sequencing-based transcriptomic analysis
(1 time)
Pulmonary Medicine
(1 time)
AhR (1 time)
BPD (1 time)
2014 The genome-wide transcriptional response to neonatal hyperoxia identifies Ahr as a key regulator.
50  RNA, and RNA-sequencing
(1 time)
Medicine
(1 time)
LAM (1 time)
2012 A powerful method for transcriptional profiling of specific cell types in eukaryotes: laser-assisted microdissection and RNA sequencing.
51  RNA-sequencing-based
(1 time)
Chemistry
(1 time)
aCTSC (1 time)
CTSCs (1 time)
GO (1 time)
2021 Transcriptional Profiling of Cardiac Cells Links Age-Dependent Changes in Acetyl-CoA Signaling to Chromatin Modifications.
52  RpoE-dependent genes using transcriptome sequencing
(1 time)
Bacteriology
(1 time)
ECF (1 time)
TCSs (1 time)
2014 Haemophilus ducreyi RpoE and CpxRA appear to play distinct yet complementary roles in regulation of envelope-related functions.
53  short-read massively-parallel sequencing
(1 time)
Neoplasms
(1 time)
HPV (1 time)
OT (1 time)
2013 Oral cavity tumors in younger patients show a poor prognosis and do not contain viral RNA.